iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Rno-105156

Ensembl Protein ID

ENSRNOP00000007185.5

UniProt Accession

F1M771; F1M771_RAT

Genbank Protein ID

ENSRNOP00000007185

Protein Name

RING1 and YY1-binding protein

Genbank Nucleotide ID

AABR07061540

Gene Name

Rybp

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000005353.6	ENSRNOT00000007185.6	ENSRNOP00000007185.5

Annotation

mRNA Expression
ArrayExpress
DNA & RNA Element
RAID2
Post-translational Modifications (PTMs)
dbPAF	PhosphositePlus
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/ZnF/NZF	4.90e-14	51.9	48	77

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/ZnF/NZF

   S: 1    aeaqWaCsaCTflNePeavkCemCsrpRgc 30
           +e++W+Cs+CTf+N++ea+kC++C+ ++g+
   Q: 48   DEGFWDCSVCTFRNSAEAFKCSICDVRKGT 77
           589*************************95 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MGGRCEKFPA SDSCELTTAY QRLFSLLYSL LGSPLLGRPK RQAKPAADEG FWDCSVCTFR 60
NSAEAFKCSI CDVRKGTSTR KPRINSQLVA QQVAQQYATP PPPKKEKKEK VEKPDKEKPE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGGTGGATGG GTGGTCGCTG CGAGAAGTTT CCAGCGTCGG ATTCCTGTGA ATTGACGACG 60
GCTTACCAGC GTTTGTTTTC TCTTCTCTAT TCTCTCCTCG GTTCTCCACT CCTCGGAAGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR033774--YAF2_RYBP
IPR001876--Znf_RanBP2

PROSITE

PS01358--ZF_RANBP2_1
PS50199--ZF_RANBP2_2

Pfam

PF17219--YAF2_RYBP
PF00641--zf-RanBP

SMART

SM00547--ZnF_RBZ

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0031519--C:PcG protein complex
GO:0003677--F:DNA binding
GO:0003714--F:transcription corepressor activity
GO:0008270--F:zinc ion binding
GO:0035518--P:histone H2A monoubiquitination
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002182	Ailuropoda melanoleuca	89.19	1.00e-66	246.00
IUUC-Apl-003475	Anas platyrhynchos	95.87	2.00e-61	228.00
IUUC-Aca-004725	Anolis carolinensis	93.12	3.00e-60	224.00
IUUC-Bta-012724	Bos taurus	99.24	2.00e-36	145.00
IUUC-Cja-019921	Callithrix jacchus	99.08	5.00e-64	237.00
IUUC-Cfa-020363	Canis familiaris	99.07	2.00e-62	231.00
IUUC-Cpo-022408	Cavia porcellus	100.00	5.00e-37	146.00
IUUC-Csa-023628	Chlorocebus sabaeus	99.08	4.00e-64	237.00
IUUC-Cho-024871	Choloepus hoffmanni	98.51	7.00e-40	155.00
IUUC-Dre-027750	Danio rerio	95.92	1.00e-24	106.00
IUUC-Dno-029292	Dasypus novemcinctus	100.00	6.00e-37	146.00
IUUC-Dor-030691	Dipodomys ordii	100.00	6.00e-37	146.00
IUUC-Ete-032320	Echinops telfairi	98.17	2.00e-62	231.00
IUUC-Eca-034330	Equus caballus	99.08	4.00e-64	237.00
IUUC-Eeu-035193	Erinaceus europaeus	83.49	5.00e-44	170.00
IUUC-Fca-035645	Felis catus	100.00	6.00e-37	146.00
IUUC-Fal-036647	Ficedula albicollis	95.79	9.00e-59	219.00
IUUC-Gga-040262	Gallus gallus	95.87	1.00e-61	229.00
IUUC-Ggo-045026	Gorilla gorilla	100.00	5.00e-37	146.00
IUUC-Hsa-045860	Homo sapiens	89.62	2.00e-68	252.00
IUUC-Itr-048728	Ictidomys tridecemlineatus	97.71	3.00e-35	140.00
IUUC-Lch-050014	Latimeria chalumnae	83.19	2.00e-26	112.00
IUUC-Loc-051746	Lepisosteus oculatus	71.77	4.00e-63	234.00
IUUC-Laf-054352	Loxodonta africana	98.62	3.00e-62	231.00
IUUC-Mcc-055623	Macaca mulatta	89.23	2.00e-67	248.00
IUUC-Mga-059812	Meleagris gallopavo	96.18	2.00e-34	137.00
IUUC-Mmr-061669	Microcebus murinus	97.71	1.00e-41	162.00
IUUC-Mdo-061964	Monodelphis domestica	96.33	3.00e-62	231.00
IUUC-Mmu-063177	Mus musculus	100.00	4.00e-64	237.00
IUUC-Mac-065491	Musa acuminata	42.86	1.00e-03	36.20
IUUC-Mpu-065711	Mustela putorius furo	99.08	4.00e-64	237.00
IUUC-Mlu-067973	Myotis lucifugus	97.59	3.00e-17	80.50
IUUC-Nle-069817	Nomascus leucogenys	96.96	4.00e-66	244.00
IUUC-Opr-070623	Ochotona princeps	100.00	5.00e-37	147.00
IUUC-Ont-071994	Oreochromis niloticus	62.84	4.00e-44	171.00
IUUC-Oan-072949	Ornithorhynchus anatinus	96.33	2.00e-62	231.00
IUUC-Ocu-074013	Oryctolagus cuniculus	87.69	3.00e-63	234.00
IUUC-Oar-090312	Ovis aries	99.24	2.00e-36	144.00
IUUC-Ptr-091316	Pan troglodytes	88.46	1.00e-65	243.00
IUUC-Pan-091877	Papio anubis	99.08	4.00e-64	237.00
IUUC-Psi-093195	Pelodiscus sinensis	92.95	2.00e-60	225.00
IUUC-Pfo-096909	Poecilia formosa	61.69	9.00e-45	173.00
IUUC-Pab-098578	Pongo abelii	88.46	5.00e-66	244.00
IUUC-Pca-100706	Procavia capensis	95.36	3.00e-42	164.00
IUUC-Pva-102682	Pteropus vampyrus	98.17	3.00e-61	227.00
IUUC-Sha-107156	Sarcophilus harrisii	97.71	5.00e-35	140.00
IUUC-Sar-113234	Sorex araneus	93.02	4.00e-57	214.00
IUUC-Ssc-116262	Sus scrofa	100.00	5.00e-37	146.00
IUUC-Tgu-116730	Taeniopygia guttata	95.87	2.00e-61	228.00
IUUC-Tsy-119328	Tarsius syrichta	100.00	6.00e-37	146.00
IUUC-Tni-120066	Tetraodon nigroviridis	58.02	3.00e-45	174.00
IUUC-Tre-121881	Trichoderma reesei	38.71	3.20e-02	33.10
IUUC-Tvi-122470	Trichoderma virens	44.83	5.00e-03	35.80
IUUC-Tbe-127332	Tupaia belangeri	98.62	2.00e-63	235.00
IUUC-Ttr-128963	Tursiops truncatus	99.08	5.00e-64	237.00
IUUC-Vpa-130270	Vicugna pacos	97.67	1.00e-35	141.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence