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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Hsa-046855
Ensembl Protein ID ENSP00000450518.1
UniProt Accession Q92784; A8MSI3; B7Z276; F5H575; Q32UJ0; Q6P9E6; Q6ZT41; Q9H7Y5; DPF3_HUMAN
Genbank Protein ID AAX20019.1; BAB14838.1; BAC86753.1; BAH11762.1; AAH60801.1; AAC50686.1
Protein Name Zinc finger protein DPF3; BRG1-associated factor 45C; Zinc finger protein cer-d4
Genbank Nucleotide ID AY803021; AK024141; AK126933; AK294425; AC004828; U43919
Gene Name DPF3; BAF45C; CERD4
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSG00000205683.11 ENST00000556509.5 ENSP00000450518.1
ENSG00000205683.11 ENST00000366353.8 ENSP00000381791.3
ENSG00000205683.11 ENST00000381216.8 ENSP00000370614.4
ENSG00000205683.11 ENST00000546183.1 ENSP00000444662.1
Annotation
Cancer Mutation
TCGAICGCCOSMICCGAP
IntOGen
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpressTCGAICGC
COSMICTHPAHPM
DNA & RNA Element
UTRdbAREsitecircRNADbCircNet
miRTarBasemicroRNATRANSFACRepTar
SomamiRmiRcodeRAID2
Protein-protein Interaction
IIDPINAHINTMentha
InWeb_IM
Protein 3D Structure
PDBMMDB
Disease-associated Variation
GWASdbOMIM
Post-translational Modifications (PTMs)
dbPAFPhosphositePlus
DNA Methylation
TCGAICGCCOSMIC
Protein Expression/Proteomics
THPAHPMGPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 activity/RING/PHD 6.70e-14 53.5 317 363
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkC 51
    k+C +Cg +++d+ +l+ C++C++ +H Cl+++v e+ ++s w C C
   Q: 317 KSCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGS--WSCHLC 363
    78********987.7*******************66665555..****** PP
   

Organism Homo sapiens
Functional Description
(View)

Functional Description



     Belongs to the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth (By similarity). Muscle-specific component of the BAF complex, a multiprotein complex involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Specifically binds acetylated lysines on histone 3 and 4 (H3K14ac, H3K9ac, H4K5ac, H4K8ac, H4K12ac, H4K16ac). In the complex, it acts as a tissue-specific anchor between histone acetylations and methylations and chromatin remodeling. It thereby probably plays an essential role in heart and skeletal muscle development.
Belongs to the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth (By similarity). Muscle-specific component of the BAF complex, a multiprotein complex involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Specifically binds acetylated lysines on histone 3 and 4 (H3K14ac, H3K9ac, H4K5ac, H4K8ac, H4K12ac, H4K16ac). In the complex, it acts as a tissue-specific anchor between histone acetylations and methylations and chromatin remodeling. It thereby probably plays an essential role in heart and skeletal muscle development.
Protein Sequence
(Fasta)
MATVIHNPLK ALGDQFYKEA IEHCRSYNSR LCAERSVRLP FLDSQTGVAQ NNCYIWMEKR 60
HRGPGLAPGQ LYTYPARCWR KKRRLHPPED PKLRLLEIKP EVELPLKKDG FTSESTTLEA 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Hsa-046855|E3,PHD|Homo sapiens
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Nucleotide Sequence
(Fasta)
AGACAATATT CTGTTACATT GTAGCAAAAT GGCGACTGTC ATTCACAACC CCCTGAAAGC 60
GTAAGTAAGA CTAAAAAATG TACATATTCC GCGTGGTTTC AATATGAAAA AAAAGGCGCC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Hsa-046855|E3,PHD|Homo sapiens
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0010--Activator
KW-0025--Alternative splicing
KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0524--Neurogenesis
KW-0539--Nucleus
KW-0621--Polymorphism
KW-1185--Reference proteome
KW-0677--Repeat
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR025750--Requiem/DPF_N_dom
IPR013087--Znf_C2H2_type
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
PS00028--ZINC_FINGER_C2H2_1
PS50157--ZINC_FINGER_C2H2_2

Pfam

PF00628--PHD
PF14051--Requiem_N

SMART

SM00249--PHD
SM00355--ZnF_C2H2

Gene Ontology

GO:0071565--C:nBAF complex
GO:0005654--C:nucleoplasm
GO:0003676--F:nucleic acid binding
GO:0008270--F:zinc ion binding
GO:0016569--P:covalent chromatin modification
GO:0007399--P:nervous system development
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006351--P:transcription, DNA-templated

KEGG hsa:8110
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001805 Ailuropoda melanoleuca 94.07 0.00e+00 654.00
IUUC-Apl-003424 Anas platyrhynchos 89.84 0.00e+00 637.00
IUUC-Aca-005022 Anolis carolinensis 89.04 0.00e+00 647.00
IUUC-Ame-011868 Astyanax mexicanus 69.29 2.00e-136 478.00
IUUC-Bta-013164 Bos taurus 97.87 0.00e+00 677.00
IUUC-Cel-018182 Caenorhabditis elegans 31.52 9.00e-48 184.00
IUUC-Cja-019565 Callithrix jacchus 100.00 0.00e+00 695.00
IUUC-Cpo-021757 Cavia porcellus 99.47 0.00e+00 693.00
IUUC-Csa-024262 Chlorocebus sabaeus 100.00 1.00e-161 562.00
IUUC-Cin-025528 Ciona intestinalis 41.67 3.00e-80 292.00
IUUC-Dre-028390 Danio rerio 69.05 2.00e-139 489.00
IUUC-Eca-034251 Equus caballus 100.00 0.00e+00 695.00
IUUC-Fca-036522 Felis catus 93.11 0.00e+00 635.00
IUUC-Fal-036898 Ficedula albicollis 88.89 0.00e+00 635.00
IUUC-Gmo-039263 Gadus morhua 64.60 5.00e-133 467.00
IUUC-Gga-041265 Gallus gallus 79.63 9.00e-180 622.00
IUUC-Ggo-045528 Gorilla gorilla 96.06 0.00e+00 664.00
IUUC-Loc-052830 Lepisosteus oculatus 75.57 5.00e-142 497.00
IUUC-Laf-053772 Loxodonta africana 83.69 0.00e+00 655.00
IUUC-Mcc-054671 Macaca mulatta 100.00 0.00e+00 672.00
IUUC-Mga-059248 Meleagris gallopavo 77.05 5.00e-172 597.00
IUUC-Mmr-061299 Microcebus murinus 99.74 0.00e+00 694.00
IUUC-Mdo-061983 Monodelphis domestica 96.46 0.00e+00 660.00
IUUC-Mmu-063734 Mus musculus 99.74 0.00e+00 692.00
IUUC-Mpu-066235 Mustela putorius furo 99.18 0.00e+00 665.00
IUUC-Mlu-067198 Myotis lucifugus 93.77 0.00e+00 637.00
IUUC-Oga-088159 Otolemur garnettii 86.40 0.00e+00 658.00
IUUC-Oar-090218 Ovis aries 97.87 0.00e+00 675.00
IUUC-Pan-092749 Papio anubis 100.00 0.00e+00 695.00
IUUC-Psi-093080 Pelodiscus sinensis 88.92 0.00e+00 635.00
IUUC-Tgu-117306 Taeniopygia guttata 90.74 0.00e+00 648.00
IUUC-Tru-118192 Takifugu rubripes 61.25 3.00e-141 494.00
IUUC-Tni-120874 Tetraodon nigroviridis 66.67 6.00e-123 434.00
IUUC-Xtr-131937 Xenopus tropicalis 72.89 6.00e-154 536.00
Created Date 25-Jun-2017

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