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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Rno-105675
Ensembl Protein ID ENSRNOP00000011378.5
UniProt Accession D4A7F7; D4A7F7_RAT
Genbank Protein ID EDL81444.1
Protein Name DDB1 and CUL4-associated factor 4; WD repeat domain 21 (Predicted)
Genbank Nucleotide ID AABR07065076
Gene Name Dcaf4; Wdr21_predicted; rCG_20953
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000008399.6 ENSRNOT00000011378.6 ENSRNOP00000011378.5
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
RAID2
Protein-protein Interaction
IID
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.90e-06 28.4 369 406
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtcla.fsd.tllvsGsdDgtikvWDlrtgvllk 37
           H + vt+++ f +  +l ++   g+ik+WDlr  ++++
   Q: 369  HDSAVTSVQvFKEeQYLMASDMAGKIKLWDLRATKCVR 406
           9999****967445899999999*********999987 PP
   
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MDKNIWTSRR RRGRSHHRSP ALRQCDSSER YTSGASQSSQ DSGHHDVECP STSSSKAGES 60
SVPDLPGFYF DPEKNRYFRL LPGHNNCNPL TKEGIQLKEM ESRRLQLLQQ EDKQKKKIAR 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105675|E3,WD_repeat|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AAAGAACCGG TCGCTTTAGT CCTATGGGCT GCGACAACAC AGAACATGGG TGTCTTTCCG 60
GATCTTCGCA CGCCTCTGGG TACTCCAGGC CAGCCGTGTT GTGTCTGAGA GGACCGTCTG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105675|E3,WD_repeat|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat
Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
SMART

SM00320--WD40
Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0071011--C:precatalytic spliceosome
GO:0005682--C:U5 snRNP
GO:0008380--P:RNA splicing
KEGG rno:362762
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001176 Aegilops tauschii 39.36 3.00e-12 65.50
IUUC-Aml-001929 Ailuropoda melanoleuca 82.26 0.00e+00 790.00
IUUC-Atr-002556 Amborella trichopoda 30.59 2.00e-14 73.60
IUUC-Apl-003177 Anas platyrhynchos 68.11 6.00e-171 593.00
IUUC-Aca-004610 Anolis carolinensis 64.19 0.00e+00 631.00
IUUC-Aly-005883 Arabidopsis lyrata 31.98 4.00e-13 69.30
IUUC-Ath-006668 Arabidopsis thaliana 32.52 7.00e-15 75.50
IUUC-Ate-010340 Aspergillus terreus 22.10 3.00e-10 60.10
IUUC-Ame-010690 Astyanax mexicanus 61.14 1.00e-154 539.00
IUUC-Bta-012668 Bos taurus 79.83 0.00e+00 716.00
IUUC-Bdi-014848 Brachypodium distachyon 34.44 1.00e-13 71.20
IUUC-Bol-016035 Brassica oleracea 34.16 9.00e-16 78.20
IUUC-Bra-016687 Brassica rapa 33.54 1.00e-14 74.70
IUUC-Cja-019560 Callithrix jacchus 78.26 1.00e-73 268.00
IUUC-Cfa-020441 Canis familiaris 82.46 0.00e+00 776.00
IUUC-Cpo-021299 Cavia porcellus 77.85 0.00e+00 774.00
IUUC-Csa-023185 Chlorocebus sabaeus 84.29 0.00e+00 787.00
IUUC-Cho-024353 Choloepus hoffmanni 78.41 0.00e+00 773.00
IUUC-Dno-029890 Dasypus novemcinctus 79.78 0.00e+00 728.00
IUUC-Dor-030618 Dipodomys ordii 82.19 3.00e-89 322.00
IUUC-Ete-032557 Echinops telfairi 68.80 3.00e-132 464.00
IUUC-Eca-033466 Equus caballus 80.36 0.00e+00 805.00
IUUC-Eeu-034995 Erinaceus europaeus 69.23 1.00e-141 495.00
IUUC-Fca-036199 Felis catus 82.81 0.00e+00 770.00
IUUC-Fal-036717 Ficedula albicollis 68.51 1.00e-169 589.00
IUUC-Gmo-039201 Gadus morhua 58.41 3.00e-150 525.00
IUUC-Gga-040398 Gallus gallus 69.05 3.00e-159 555.00
IUUC-Gac-042391 Gasterosteus aculeatus 54.18 2.00e-159 555.00
IUUC-Gma-042906 Glycine max 27.04 3.00e-10 59.70
IUUC-Ggo-045348 Gorilla gorilla 83.73 0.00e+00 795.00
IUUC-Hsa-046746 Homo sapiens 83.95 0.00e+00 798.00
IUUC-Hvu-047825 Hordeum vulgare 33.76 2.00e-15 77.00
IUUC-Itr-048472 Ictidomys tridecemlineatus 81.97 0.00e+00 780.00
IUUC-Lch-050272 Latimeria chalumnae 56.25 3.00e-145 508.00
IUUC-Lpe-051618 Leersia perrieri 28.66 2.00e-12 67.00
IUUC-Loc-051772 Lepisosteus oculatus 60.55 8.00e-164 570.00
IUUC-Laf-054577 Loxodonta africana 69.89 1.00e-176 612.00
IUUC-Mcc-055284 Macaca mulatta 71.08 2.00e-180 624.00
IUUC-Meu-056721 Macropus eugenii 63.47 4.00e-90 324.00
IUUC-Mtr-058472 Medicago truncatula 29.11 2.00e-12 67.00
IUUC-Mga-059238 Meleagris gallopavo 69.25 3.00e-162 564.00
IUUC-Mmr-061642 Microcebus murinus 85.68 0.00e+00 689.00
IUUC-Mdo-062030 Monodelphis domestica 68.57 5.00e-180 624.00
IUUC-Mmu-063420 Mus musculus 93.64 0.00e+00 964.00
IUUC-Mac-065231 Musa acuminata 32.85 3.00e-16 80.10
IUUC-Mpu-065692 Mustela putorius furo 82.66 0.00e+00 790.00
IUUC-Mlu-067428 Myotis lucifugus 81.56 0.00e+00 776.00
IUUC-Nle-070145 Nomascus leucogenys 82.35 0.00e+00 803.00
IUUC-Opr-071081 Ochotona princeps 77.31 0.00e+00 699.00
IUUC-Ont-071302 Oreochromis niloticus 60.23 1.00e-153 536.00
IUUC-Oan-073494 Ornithorhynchus anatinus 57.49 3.00e-124 438.00
IUUC-Ocu-073925 Oryctolagus cuniculus 83.18 0.00e+00 750.00
IUUC-Oba-075797 Oryza barthii 28.30 2.00e-12 67.80
IUUC-Obr-076014 Oryza brachyantha 29.49 2.00e-13 70.90
IUUC-Ogl-077201 Oryza glaberrima 28.30 1.00e-12 67.40
IUUC-Ogu-078056 Oryza glumaepatula 28.30 2.00e-12 67.40
IUUC-Oin-080062 Oryza indica 28.30 2.00e-12 67.40
IUUC-Olo-080869 Oryza longistaminata 28.30 1.00e-12 68.90
IUUC-Ome-081820 Oryza meridionalis 28.30 6.00e-13 68.90
IUUC-Oni-082497 Oryza nivara 28.30 2.00e-12 67.40
IUUC-Opu-083780 Oryza punctata 28.67 3.00e-11 64.30
IUUC-Oru-085091 Oryza rufipogon 28.30 1.00e-12 67.80
IUUC-Osa-085725 Oryza sativa 28.30 1.00e-12 67.80
IUUC-Ola-087033 Oryzias latipes 59.68 2.00e-142 499.00
IUUC-Oga-088861 Otolemur garnettii 78.59 0.00e+00 753.00
IUUC-Oar-090048 Ovis aries 80.17 0.00e+00 768.00
IUUC-Ptr-091658 Pan troglodytes 83.51 0.00e+00 793.00
IUUC-Pan-092873 Papio anubis 80.67 0.00e+00 792.00
IUUC-Psi-093421 Pelodiscus sinensis 68.47 9.00e-175 606.00
IUUC-Pma-094216 Petromyzon marinus 43.18 8.00e-94 337.00
IUUC-Ppa-095186 Physcomitrella patens 47.76 7.00e-10 58.90
IUUC-Pfo-096178 Poecilia formosa 58.24 2.00e-143 502.00
IUUC-Pab-098037 Pongo abelii 70.38 1.00e-163 569.00
IUUC-Pop-099334 Populus trichocarpa 31.68 5.00e-16 77.40
IUUC-Pca-100845 Procavia capensis 69.68 0.00e+00 665.00
IUUC-Pva-103203 Pteropus vampyrus 79.60 0.00e+00 776.00
IUUC-Sha-107389 Sarcophilus harrisii 72.18 0.00e+00 642.00
IUUC-Spo-108190 Schizosaccharomyces pombe 25.33 3.00e-07 49.30
IUUC-Sit-110421 Setaria italica 30.56 7.00e-14 71.20
IUUC-Sly-110888 Solanum lycopersicum 24.50 4.00e-08 53.10
IUUC-Sar-113185 Sorex araneus 63.81 2.00e-157 548.00
IUUC-Sbi-114182 Sorghum bicolor 40.79 4.00e-13 67.80
IUUC-Ssc-116005 Sus scrofa 82.49 0.00e+00 796.00
IUUC-Tgu-117023 Taeniopygia guttata 65.26 5.00e-163 567.00
IUUC-Tru-118221 Takifugu rubripes 59.01 9.00e-152 530.00
IUUC-Tsy-118784 Tarsius syrichta 70.63 3.00e-169 587.00
IUUC-Tni-120072 Tetraodon nigroviridis 58.84 1.00e-152 533.00
IUUC-Tca-121267 Theobroma cacao 25.86 1.00e-17 84.70
IUUC-Tae-124900 Triticum aestivum 33.12 1.00e-15 76.60
IUUC-Tur-126655 Triticum urartu 33.12 2.00e-15 76.60
IUUC-Tbe-127243 Tupaia belangeri 71.52 0.00e+00 649.00
IUUC-Ttr-129237 Tursiops truncatus 84.62 0.00e+00 676.00
IUUC-Vvi-131184 Vitis vinifera 27.72 1.00e-09 57.80
IUUC-Xtr-132006 Xenopus tropicalis 50.00 1.00e-122 433.00
Created Date 25-Jun-2017

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