iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

   S: 1    gHtdsvtclaf...sdtllvsGsdDgtikvWDlr 31
           gHt+ v ++++   ++  l+sGs Dgt+++WD+r
   Q: 187  GHTGNVLAVDWcpkNEFVLASGSADGTCRLWDIR 220
           8***********6443558*************86 PP

Organism

Schizosaccharomyces pombe

Functional Description
(View)

Adapter protein for ddb1/cullin 4 ubiquitin ligases involved in transcription-coupled nucleotide excision repair.

Protein Sequence
(Fasta)

MNSFLLAREW GQEPNSSFRR QLLQHRLQRL ALNPDVKIKR RHGAGILGSV NALSIDNTIH 60
QLMVSGGANS SINVWDLQNI DQKEDEDLIL DTLNAVPART SHKFGITDLH WFPFDNGIFT 120

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Nucleotide Sequence
(Fasta)

CCAACGTCGA AAAACATATT TTTTTATTAT TGTTTCCTGG AAACTACCTT TGAGTTTGCT 60
ATTTAAACAT AGAAGTTGAT TAATTGACAG TATTATTTAC CGCTCATATT AAACTAGCTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0227--DNA damage
KW-0234--DNA repair
KW-1185--Reference proteome
KW-0677--Repeat
KW-0833--Ubl conjugation pathway
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0070912--C:Ddb1-Ckn1 complex
GO:0005634--C:nucleus
GO:0006283--P:transcription-coupled nucleotide-excision repair

KEGG

spo:SPBC577.09

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001170	Aegilops tauschii	36.22	4.00e-17	81.60
IUUC-Aml-002201	Ailuropoda melanoleuca	35.80	3.00e-68	250.00
IUUC-Atr-002784	Amborella trichopoda	35.53	1.00e-35	142.00
IUUC-Apl-003202	Anas platyrhynchos	37.70	1.00e-67	247.00
IUUC-Aca-004708	Anolis carolinensis	38.27	6.00e-65	238.00
IUUC-Aly-006144	Arabidopsis lyrata	36.84	4.00e-36	143.00
IUUC-Ath-006673	Arabidopsis thaliana	36.68	3.00e-36	144.00
IUUC-Acl-008195	Aspergillus clavatus	28.10	3.00e-39	154.00
IUUC-Afl-008406	Aspergillus flavus	29.62	1.00e-39	155.00
IUUC-Afu-008759	Aspergillus fumigatus	29.47	9.00e-37	145.00
IUUC-Ani-009380	Aspergillus nidulans	28.61	4.00e-35	140.00
IUUC-Ang-009820	Aspergillus niger	31.30	2.00e-36	144.00
IUUC-Aor-010092	Aspergillus oryzae	28.42	9.00e-43	166.00
IUUC-Ate-010491	Aspergillus terreus	30.69	2.00e-38	151.00
IUUC-Bta-012825	Bos taurus	35.07	3.00e-67	246.00
IUUC-Bci-013856	Botrytis cinerea	36.86	3.00e-63	233.00
IUUC-Bdi-014899	Brachypodium distachyon	27.06	1.00e-33	135.00
IUUC-Bol-015337	Brassica oleracea	36.32	2.00e-37	147.00
IUUC-Bra-018089	Brassica rapa	36.32	7.00e-38	149.00
IUUC-Cja-018725	Callithrix jacchus	35.07	4.00e-67	246.00
IUUC-Cfa-021162	Canis familiaris	35.80	1.00e-67	248.00
IUUC-Cpo-022190	Cavia porcellus	34.60	3.00e-67	246.00
IUUC-Cre-022960	Chlamydomonas reinhardtii	30.05	5.00e-25	107.00
IUUC-Csa-023610	Chlorocebus sabaeus	34.83	2.00e-67	247.00
IUUC-Cho-024689	Choloepus hoffmanni	33.87	6.00e-60	222.00
IUUC-Cin-025324	Ciona intestinalis	31.52	1.00e-49	188.00
IUUC-Csv-026059	Ciona savignyi	32.22	2.00e-49	187.00
IUUC-Cgl-026384	Colletotrichum gloeosporioides	35.69	1.00e-40	158.00
IUUC-Cme-027182	Cyanidioschyzon merolae	30.46	4.00e-17	81.30
IUUC-Dre-028696	Danio rerio	36.06	9.00e-66	241.00
IUUC-Dno-029102	Dasypus novemcinctus	35.90	8.00e-66	241.00
IUUC-Dor-030361	Dipodomys ordii	31.41	5.00e-52	196.00
IUUC-Dse-031167	Dothistroma septosporum	30.77	1.00e-48	184.00
IUUC-Ete-032856	Echinops telfairi	28.72	2.00e-44	170.00
IUUC-Eca-033611	Equus caballus	35.33	1.00e-59	221.00
IUUC-Eeu-034583	Erinaceus europaeus	45.83	1.00e-23	101.00
IUUC-Fca-036481	Felis catus	35.57	6.00e-68	249.00
IUUC-Fal-037327	Ficedula albicollis	38.85	2.00e-63	234.00
IUUC-Fox-037684	Fusarium oxysporum	32.14	3.00e-46	177.00
IUUC-Fso-038306	Fusarium solani	28.92	4.00e-50	190.00
IUUC-Gmo-039043	Gadus morhua	36.58	6.00e-67	245.00
IUUC-Ggr-039783	Gaeumannomyces graminis	29.00	6.00e-41	159.00
IUUC-Gga-041085	Gallus gallus	37.50	8.00e-67	245.00
IUUC-Gac-042328	Gasterosteus aculeatus	37.34	1.00e-60	224.00
IUUC-Gma-043004	Glycine max	26.57	2.00e-30	124.00
IUUC-Ggo-045627	Gorilla gorilla	34.01	5.00e-58	216.00
IUUC-Hsa-046028	Homo sapiens	34.83	2.00e-67	247.00
IUUC-Hvu-047678	Hordeum vulgare	46.34	3.00e-18	83.60
IUUC-Itr-048648	Ictidomys tridecemlineatus	35.57	7.00e-69	252.00
IUUC-Kpa-049386	Komagataella pastoris	29.29	1.00e-52	198.00
IUUC-Lch-050590	Latimeria chalumnae	36.59	3.00e-58	216.00
IUUC-Lpe-051725	Leersia perrieri	27.67	4.00e-19	87.00
IUUC-Loc-051788	Lepisosteus oculatus	37.40	4.00e-65	239.00
IUUC-Lma-053082	Leptosphaeria maculans	35.61	2.00e-64	237.00
IUUC-Laf-053809	Loxodonta africana	37.06	2.00e-68	250.00
IUUC-Mcc-054998	Macaca mulatta	40.07	4.00e-60	223.00
IUUC-Meu-055929	Macropus eugenii	36.94	2.00e-59	221.00
IUUC-Mor-057003	Magnaporthe oryzae	34.44	3.00e-47	180.00
IUUC-Mtr-057921	Medicago truncatula	26.48	1.00e-29	121.00
IUUC-Mga-059449	Meleagris gallopavo	30.60	1.00e-38	151.00
IUUC-Mmr-061609	Microcebus murinus	34.37	3.00e-57	213.00
IUUC-Mdo-062564	Monodelphis domestica	36.16	9.00e-70	255.00
IUUC-Mmu-063904	Mus musculus	36.94	7.00e-69	252.00
IUUC-Mac-064716	Musa acuminata	37.28	4.00e-35	140.00
IUUC-Mpu-066617	Mustela putorius furo	35.82	4.00e-68	249.00
IUUC-Mlu-067054	Myotis lucifugus	35.15	2.00e-65	241.00
IUUC-Nfi-068467	Neosartorya fischeri	27.41	4.00e-33	133.00
IUUC-Nle-069731	Nomascus leucogenys	34.83	2.00e-67	247.00
IUUC-Ont-072558	Oreochromis niloticus	37.67	6.00e-61	226.00
IUUC-Ocu-074415	Oryctolagus cuniculus	35.64	1.00e-67	248.00
IUUC-Oba-075759	Oryza barthii	37.16	2.00e-34	137.00
IUUC-Obr-076387	Oryza brachyantha	38.25	1.00e-35	141.00
IUUC-Ogu-078186	Oryza glumaepatula	29.12	8.00e-41	159.00
IUUC-Oin-079389	Oryza indica	28.83	2.00e-25	107.00
IUUC-Ome-081471	Oryza meridionalis	37.70	4.00e-33	133.00
IUUC-Oni-082449	Oryza nivara	36.13	2.00e-32	131.00
IUUC-Opu-083210	Oryza punctata	39.34	8.00e-37	145.00
IUUC-Oru-085159	Oryza rufipogon	37.16	3.00e-34	137.00
IUUC-Osa-085926	Oryza sativa	37.75	5.00e-26	108.00
IUUC-Ola-087084	Oryzias latipes	37.93	5.00e-67	246.00
IUUC-Olu-087853	Ostreococcus lucimarinus	30.81	3.00e-22	97.40
IUUC-Oga-089008	Otolemur garnettii	35.90	2.00e-64	237.00
IUUC-Oar-089259	Ovis aries	35.07	2.00e-67	247.00
IUUC-Ptr-091112	Pan troglodytes	34.59	3.00e-66	243.00
IUUC-Psi-093050	Pelodiscus sinensis	36.15	9.00e-67	245.00
IUUC-Pma-094259	Petromyzon marinus	31.68	4.00e-44	169.00
IUUC-Pno-094798	Phaeosphaeria nodorum	31.80	1.00e-59	221.00
IUUC-Ppa-095477	Physcomitrella patens	32.39	1.00e-32	131.00
IUUC-Pfo-096855	Poecilia formosa	36.89	4.00e-68	249.00
IUUC-Pab-098096	Pongo abelii	34.83	5.00e-67	246.00
IUUC-Pop-098800	Populus trichocarpa	28.82	2.00e-45	174.00
IUUC-Pca-100187	Procavia capensis	39.07	1.00e-38	151.00
IUUC-Ppe-101759	Prunus persica	34.14	1.00e-36	145.00
IUUC-Pva-102438	Pteropus vampyrus	42.76	4.00e-33	133.00
IUUC-Pte-104197	Pyrenophora teres	35.80	1.00e-57	214.00
IUUC-Pyt-104421	Pyrenophora triticirepentis	32.33	1.00e-56	212.00
IUUC-Rno-106087	Rattus norvegicus	37.14	4.00e-68	249.00
IUUC-Sce-106276	Saccharomyces cerevisiae	25.26	6.00e-15	73.60
IUUC-Sha-106831	Sarcophilus harrisii	34.68	9.00e-63	231.00
IUUC-Sja-107681	Schizosaccharomyces japonicus	58.37	8.00e-134	468.00
IUUC-Ssl-108613	Sclerotinia sclerotiorum	37.89	3.00e-62	230.00
IUUC-Smo-109008	Selaginella moellendorffii	31.17	2.00e-49	187.00
IUUC-Sit-110300	Setaria italica	36.61	5.00e-33	133.00
IUUC-Sly-111441	Solanum lycopersicum	34.33	8.00e-31	125.00
IUUC-Stu-111995	Solanum tuberosum	34.21	6.00e-31	126.00
IUUC-Sar-113196	Sorex araneus	30.08	9.00e-35	139.00
IUUC-Sbi-113790	Sorghum bicolor	35.08	2.00e-33	135.00
IUUC-Ssc-115609	Sus scrofa	36.55	2.00e-67	247.00
IUUC-Tgu-116927	Taeniopygia guttata	36.91	4.00e-70	256.00
IUUC-Tru-118164	Takifugu rubripes	37.69	6.00e-69	252.00
IUUC-Tsy-119151	Tarsius syrichta	32.59	2.00e-57	214.00
IUUC-Tni-120896	Tetraodon nigroviridis	37.06	3.00e-61	226.00
IUUC-Tca-121592	Theobroma cacao	35.09	1.00e-35	142.00
IUUC-Tre-122023	Trichoderma reesei	31.73	3.00e-56	210.00
IUUC-Tvi-122507	Trichoderma virens	30.22	3.00e-53	201.00
IUUC-Tae-125276	Triticum aestivum	37.50	1.00e-34	139.00
IUUC-Tur-126092	Triticum urartu	35.29	3.00e-16	77.40
IUUC-Tbe-127422	Tupaia belangeri	39.10	1.00e-25	108.00
IUUC-Ttr-129097	Tursiops truncatus	34.85	3.00e-66	243.00
IUUC-Vda-130014	Verticillium dahliae	37.97	5.00e-47	179.00
IUUC-Vpa-130782	Vicugna pacos	36.29	3.00e-66	243.00
IUUC-Vvi-131494	Vitis vinifera	34.65	6.00e-35	139.00
IUUC-Xtr-132165	Xenopus tropicalis	35.73	2.00e-65	240.00
IUUC-Xma-133205	Xiphophorus maculatus	37.71	3.00e-71	259.00
IUUC-Yli-134614	Yarrowia lipolytica	31.19	3.00e-63	233.00
IUUC-Zma-135861	Zea mays	37.17	2.00e-34	138.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence