iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Apl-003438

Ensembl Protein ID

ENSAPLP00000003927.1

UniProt Accession

R0KCG2; R0KCG2_ANAPL

Genbank Protein ID

EOB08056.1

Protein Name

Cleavage stimulation factor 50 kDa subunit

Genbank Nucleotide ID

ADON01010426

Gene Name

CSTF1; Anapl_00282

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSAPLG00000004391.1	ENSAPLT00000004534.1	ENSAPLP00000003927.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.30e-28	96.8	172	202
UBD/Beta-Prp	1.70e-73	247.1	102	429

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           H d+vtclaf ++  +l+sGs+D t+k++D+
   Q: 172  HVDEVTCLAFhPTeQILASGSRDYTLKLFDY 202
           9**********77799**************7 PP

UBD/Beta-Prp

   S: 4    tlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkl.......................lrslsgheaevtavkfspdgkilvt 69
           ++ ++hk+++++ ++s+d++l+atgs+d++ik+ d++++ +                       +r+l++h +evt++ f+p+++il++
   Q: 102  CYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAksampievmmnetaqqnmenhpvIRTLYDHVDEVTCLAFHPTEQILAS 190
           67889*********************************988************************************************ PP
   S: 70   gseDrtikvwdlstgkcvhtlk..ghedsvlslsfspsgdklvsGshdrtirvwdletgqclee..tlsghdgvvncvvvhpdgnllvs 154
           gs+D+t+k++d+s+++  +++k  ++ ++++s+sf+psgd++++G+++ t+r++d++t qc+ +  ++++h++++++v+++ ++n++v+
   Q: 191  GSRDYTLKLFDYSKPSAKRAFKyiQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVScnPQDQHTDAICSVNYNASANMYVT 279
           *****************99999999***************************************99*********************** PP
   S: 155  GslDrtvrlWdlktgkllrtltgghtdsvysls.fdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfs....pnderlv 238
           Gs+D++++lWd  ++++++t++++h+++  + + f++n+k+++s ++d+  klw+++tg+++++++g     ++v+ +    +++e +v
   Q: 280  GSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAiFSKNSKYILSSGKDSVAKLWEISTGRTLVKYTGAGLSGRQVHRTqavfNHTEDYV 368
           *********************9999998777666***********************************99999988877789****** PP
   S: 239  sgssDgsiri..Wdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwklkkn 297
              ++++i++  Wd+r+ +  + l+l ++s++ + v+s++++ ++++s+d ++++w  +++
   Q: 369  LLPDERTISLccWDSRTAERRNLLSLGHNSIVRCIVHSPTNPGFMTCSDDYRARFWYRRST 429
           ********9888********************************************98765 PP

Organism

Anas platyrhynchos

Protein Sequence
(Fasta)

MYRTKVSLKD RQQLYKLIIS QLLYDGYINI ANGLINEIKP QSVCAPSEQL LHLIKLGMEN 60
DDSAVQYAIG RSDTVAPGTG IDLEFDADVQ TMSPEASEYE TCYVTSHKGP CRVATYSRDG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTATAGAA CAAAAGTCAG CTTGAAAGAC CGTCAGCAAC TTTATAAATT GATAATTAGT 60
CAGCTACTAT ATGATGGATA CATAAATATT GCCAATGGCT TAATAAATGA GATAAAACCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR032028--CSTF1_dimer
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF16699--CSTF1_dimer
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0003723--F:RNA binding

KEGG

apla:101795508

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002163	Ailuropoda melanoleuca	98.38	0.00e+00	895.00
IUUC-Atr-002687	Amborella trichopoda	38.16	1.00e-67	250.00
IUUC-Aca-005178	Anolis carolinensis	99.07	0.00e+00	902.00
IUUC-Aly-005791	Arabidopsis lyrata	37.26	2.00e-80	292.00
IUUC-Ath-006689	Arabidopsis thaliana	37.50	7.00e-81	293.00
IUUC-Ame-011217	Astyanax mexicanus	91.20	1.00e-161	561.00
IUUC-Bta-012619	Bos taurus	98.61	0.00e+00	896.00
IUUC-Bdi-014515	Brachypodium distachyon	43.43	1.00e-79	289.00
IUUC-Bra-017450	Brassica rapa	36.49	3.00e-75	275.00
IUUC-Cel-018151	Caenorhabditis elegans	52.44	1.00e-134	472.00
IUUC-Cja-019304	Callithrix jacchus	98.38	0.00e+00	896.00
IUUC-Cfa-020208	Canis familiaris	98.38	0.00e+00	895.00
IUUC-Cpo-022245	Cavia porcellus	98.38	0.00e+00	895.00
IUUC-Csa-023066	Chlorocebus sabaeus	98.38	0.00e+00	896.00
IUUC-Cho-024770	Choloepus hoffmanni	98.66	0.00e+00	783.00
IUUC-Cin-025621	Ciona intestinalis	56.91	2.00e-151	528.00
IUUC-Csv-026071	Ciona savignyi	59.91	9.00e-162	562.00
IUUC-Dre-028254	Danio rerio	90.02	0.00e+00	831.00
IUUC-Dno-029903	Dasypus novemcinctus	98.38	0.00e+00	895.00
IUUC-Dor-030423	Dipodomys ordii	98.14	0.00e+00	894.00
IUUC-Dme-031993	Drosophila melanogaster	54.63	4.00e-132	464.00
IUUC-Ete-032689	Echinops telfairi	96.64	4.00e-81	294.00
IUUC-Eca-033316	Equus caballus	98.14	0.00e+00	894.00
IUUC-Eeu-035001	Erinaceus europaeus	93.97	0.00e+00	856.00
IUUC-Fca-036447	Felis catus	98.38	0.00e+00	895.00
IUUC-Fal-037601	Ficedula albicollis	100.00	0.00e+00	907.00
IUUC-Gmo-038531	Gadus morhua	88.22	0.00e+00	802.00
IUUC-Gga-040869	Gallus gallus	99.77	0.00e+00	904.00
IUUC-Gac-042380	Gasterosteus aculeatus	89.40	0.00e+00	821.00
IUUC-Gma-043478	Glycine max	39.05	2.00e-84	305.00
IUUC-Ggo-045302	Gorilla gorilla	98.38	0.00e+00	896.00
IUUC-Hsa-045678	Homo sapiens	98.38	0.00e+00	896.00
IUUC-Hvu-047301	Hordeum vulgare	43.92	9.00e-82	296.00
IUUC-Itr-048259	Ictidomys tridecemlineatus	98.38	0.00e+00	895.00
IUUC-Lch-050319	Latimeria chalumnae	95.13	0.00e+00	870.00
IUUC-Lpe-051440	Leersia perrieri	40.45	4.00e-67	248.00
IUUC-Loc-052035	Lepisosteus oculatus	91.88	0.00e+00	842.00
IUUC-Laf-054275	Loxodonta africana	98.38	0.00e+00	895.00
IUUC-Mcc-055857	Macaca mulatta	85.15	0.00e+00	744.00
IUUC-Meu-056194	Macropus eugenii	100.00	1.00e-92	332.00
IUUC-Mtr-058667	Medicago truncatula	38.55	8.00e-77	280.00
IUUC-Mga-059710	Meleagris gallopavo	99.77	0.00e+00	904.00
IUUC-Mmr-060604	Microcebus murinus	98.38	0.00e+00	895.00
IUUC-Mdo-062953	Monodelphis domestica	99.07	0.00e+00	900.00
IUUC-Mmu-064292	Mus musculus	98.14	0.00e+00	894.00
IUUC-Mac-064568	Musa acuminata	43.84	7.00e-79	286.00
IUUC-Mpu-066294	Mustela putorius furo	66.67	9.00e-161	559.00
IUUC-Mlu-067995	Myotis lucifugus	97.45	0.00e+00	885.00
IUUC-Nle-069322	Nomascus leucogenys	98.38	0.00e+00	896.00
IUUC-Opr-070580	Ochotona princeps	98.38	0.00e+00	894.00
IUUC-Ont-072554	Oreochromis niloticus	91.65	0.00e+00	842.00
IUUC-Oan-072856	Ornithorhynchus anatinus	98.61	0.00e+00	897.00
IUUC-Ocu-074150	Oryctolagus cuniculus	86.57	0.00e+00	756.00
IUUC-Oba-075585	Oryza barthii	38.59	9.00e-70	257.00
IUUC-Obr-076069	Oryza brachyantha	39.07	2.00e-75	276.00
IUUC-Ogl-077045	Oryza glaberrima	42.73	6.00e-80	290.00
IUUC-Ogu-078697	Oryza glumaepatula	39.74	2.00e-75	277.00
IUUC-Oin-080119	Oryza indica	42.73	6.00e-80	290.00
IUUC-Olo-081093	Oryza longistaminata	31.86	2.00e-44	175.00
IUUC-Ome-081718	Oryza meridionalis	34.71	2.00e-56	213.00
IUUC-Oni-082072	Oryza nivara	38.59	9.00e-70	257.00
IUUC-Opu-084080	Oryza punctata	35.00	3.00e-57	215.00
IUUC-Oru-085070	Oryza rufipogon	39.32	2.00e-69	257.00
IUUC-Osa-086149	Oryza sativa	42.73	6.00e-80	290.00
IUUC-Ola-086697	Oryzias latipes	91.18	0.00e+00	842.00
IUUC-Oga-088697	Otolemur garnettii	98.38	0.00e+00	895.00
IUUC-Oar-089774	Ovis aries	98.38	0.00e+00	897.00
IUUC-Ptr-090924	Pan troglodytes	98.38	0.00e+00	896.00
IUUC-Pan-092373	Papio anubis	98.38	0.00e+00	897.00
IUUC-Psi-094001	Pelodiscus sinensis	99.77	0.00e+00	905.00
IUUC-Pma-094274	Petromyzon marinus	73.66	0.00e+00	692.00
IUUC-Ppa-095562	Physcomitrella patens	36.18	3.00e-81	295.00
IUUC-Pfo-097235	Poecilia formosa	91.65	0.00e+00	841.00
IUUC-Pab-098608	Pongo abelii	98.38	0.00e+00	896.00
IUUC-Pca-100268	Procavia capensis	98.61	0.00e+00	896.00
IUUC-Ppe-101425	Prunus persica	42.07	1.00e-83	303.00
IUUC-Pva-103183	Pteropus vampyrus	98.38	0.00e+00	895.00
IUUC-Rno-105097	Rattus norvegicus	98.14	0.00e+00	894.00
IUUC-Sha-107642	Sarcophilus harrisii	99.07	0.00e+00	900.00
IUUC-Smo-108680	Selaginella moellendorffii	36.07	4.00e-78	285.00
IUUC-Sit-110471	Setaria italica	41.15	6.00e-83	301.00
IUUC-Sly-111143	Solanum lycopersicum	34.17	2.00e-33	135.00
IUUC-Stu-111926	Solanum tuberosum	44.72	2.00e-33	134.00
IUUC-Sar-112947	Sorex araneus	98.96	2.00e-173	600.00
IUUC-Sbi-113769	Sorghum bicolor	43.03	5.00e-80	291.00
IUUC-Ssc-115736	Sus scrofa	98.38	0.00e+00	895.00
IUUC-Tgu-117457	Taeniopygia guttata	100.00	0.00e+00	907.00
IUUC-Tru-117760	Takifugu rubripes	90.95	0.00e+00	840.00
IUUC-Tsy-118943	Tarsius syrichta	97.45	0.00e+00	880.00
IUUC-Tni-120081	Tetraodon nigroviridis	91.65	0.00e+00	843.00
IUUC-Tca-121190	Theobroma cacao	40.65	4.00e-87	314.00
IUUC-Tae-125535	Triticum aestivum	44.81	1.00e-84	306.00
IUUC-Tur-126329	Triticum urartu	44.81	3.00e-84	305.00
IUUC-Tbe-127878	Tupaia belangeri	96.93	0.00e+00	868.00
IUUC-Ttr-128985	Tursiops truncatus	98.38	0.00e+00	895.00
IUUC-Vpa-130147	Vicugna pacos	98.14	0.00e+00	893.00
IUUC-Vvi-130935	Vitis vinifera	39.53	3.00e-86	311.00
IUUC-Xtr-132482	Xenopus tropicalis	95.36	0.00e+00	870.00
IUUC-Xma-133929	Xiphophorus maculatus	91.65	0.00e+00	841.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence