iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Lch-050319

Ensembl Protein ID

ENSLACP00000018487.2

UniProt Accession

H3B9B6; H3B9B6_LATCH

Genbank Protein ID

ENSLACP00000018487

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AFYH01027209

Gene Name

CSTF1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSLACG00000016278.2	ENSLACT00000018620.2	ENSLACP00000018487.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.00e-27	92.2	172	202
UBD/Beta-Prp	4.10e-72	243.1	102	429

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           H d+vtclaf ++  +l+sGs D t+k++D+
   Q: 172  HVDEVTCLAFhPTeQILASGSKDYTLKLFDY 202
           9**********77799**************7 PP

UBD/Beta-Prp

   S: 4    tlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkl.......................lrslsgheaevtavkfspdgkilvt 69
           ++ ++hk+++++ ++s+d++l+atgs+d++ik+ d++++ +                       +r+l++h +evt++ f+p+++il++
   Q: 102  CYVTSHKGQCRVATYSRDGQLIATGSADASIKILDTERMLAksampievmmnetaqqnmenhpvIRTLYDHVDEVTCLAFHPTEQILAS 190
           67789*********************************988************************************************ PP
   S: 70   gseDrtikvwdlstgkcvhtlk..ghedsvlslsfspsgdklvsGshdrtirvwdletgqclee..tlsghdgvvncvvvhpdgnllvs 154
           gs+D+t+k++d+s+++  +++k  ++ ++++s+s++psgd++++G+++ t+r++d++t qc+ +  ++++h+++++ v+++p++n++v+
   Q: 191  GSKDYTLKLFDYSKPSAKRAFKyiQEAEMLRSISIHPSGDFILVGTQHPTLRLYDINTFQCFVScnPQDQHTDAICAVNYNPSANMYVT 279
           *****************99999999***************************************99*********************** PP
   S: 155  GslDrtvrlWdlktgkllrtltgghtdsvysls.fdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfs....pnderlv 238
           +s+D+ ++lWd  ++++++t++++h+++  + + f++n+k+++s ++d+  klw+++tg+++++++g     ++++ +    +++e +v
   Q: 280  CSKDGSIKLWDGVSNRCITTFEKAHDGAEVCSAiFSKNSKYILSSGKDSVAKLWEISTGRTLVKYTGAGLSGRQMHRTqavfNHTEDYV 368
           *********************9999998777666***********************************88888887777789****** PP
   S: 239  sgssDgsiri..Wdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwklkkn 297
              ++++i++  Wd+rs +  + l+l +++++ + v+s++++ ++++s+d ++++w  +++
   Q: 369  LLPDERTISLccWDSRSAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDYRARFWYRRST 429
           ********9888********************************************98765 PP

Organism

Latimeria chalumnae

Protein Sequence
(Fasta)

MYRSKVTLKD RQHLYKLIIS QLLYDGFTNL ANGLINEVKP QSLCSPSEQL LHLTKLGMEN 60
DDSTVQYAIG RSDTVAPGTG IDLEFDADVQ TMSPEASEYE TCYVTSHKGQ CRVATYSRDG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGCTGGCTCT GGAAGTCTGT GTCTTGTTTT AACTGTCTCC GCAAAGCTTT GCTGCGCGGG 60
TAACGTGAGT AAAATAACAT ATAAATTAAA GCCACTGGCG AGTTTTCTAC AGATATTATT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR032028--CSTF1_dimer
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF16699--CSTF1_dimer
PF00400--WD40

SMART

SM00320--WD40

KEGG

lcm:102364688

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002163	Ailuropoda melanoleuca	94.66	0.00e+00	868.00
IUUC-Atr-002687	Amborella trichopoda	37.91	3.00e-66	246.00
IUUC-Apl-003438	Anas platyrhynchos	95.13	0.00e+00	870.00
IUUC-Aca-005178	Anolis carolinensis	94.90	0.00e+00	868.00
IUUC-Aly-005791	Arabidopsis lyrata	36.79	3.00e-78	285.00
IUUC-Ath-006689	Arabidopsis thaliana	37.74	7.00e-79	287.00
IUUC-Ame-011217	Astyanax mexicanus	91.55	1.00e-163	568.00
IUUC-Bta-012619	Bos taurus	94.90	0.00e+00	869.00
IUUC-Bdi-014515	Brachypodium distachyon	43.43	4.00e-79	288.00
IUUC-Bra-017450	Brassica rapa	39.19	2.00e-74	272.00
IUUC-Cel-018151	Caenorhabditis elegans	51.72	8.00e-133	466.00
IUUC-Cja-019304	Callithrix jacchus	94.43	0.00e+00	865.00
IUUC-Cfa-020208	Canis familiaris	94.66	0.00e+00	868.00
IUUC-Cpo-022245	Cavia porcellus	94.66	0.00e+00	868.00
IUUC-Csa-023066	Chlorocebus sabaeus	94.43	0.00e+00	865.00
IUUC-Cho-024770	Choloepus hoffmanni	96.79	0.00e+00	768.00
IUUC-Cin-025621	Ciona intestinalis	56.34	2.00e-148	518.00
IUUC-Csv-026071	Ciona savignyi	58.97	3.00e-159	554.00
IUUC-Dre-028254	Danio rerio	90.26	0.00e+00	836.00
IUUC-Dno-029903	Dasypus novemcinctus	94.66	0.00e+00	868.00
IUUC-Dor-030423	Dipodomys ordii	94.90	0.00e+00	868.00
IUUC-Dme-031993	Drosophila melanogaster	54.01	7.00e-132	463.00
IUUC-Ete-032689	Echinops telfairi	89.26	1.00e-75	276.00
IUUC-Eca-033316	Equus caballus	94.43	0.00e+00	867.00
IUUC-Eeu-035001	Erinaceus europaeus	90.49	0.00e+00	833.00
IUUC-Fca-036447	Felis catus	94.66	0.00e+00	868.00
IUUC-Fal-037601	Ficedula albicollis	95.13	0.00e+00	870.00
IUUC-Gmo-038531	Gadus morhua	88.91	0.00e+00	810.00
IUUC-Gga-040869	Gallus gallus	94.90	0.00e+00	867.00
IUUC-Gac-042380	Gasterosteus aculeatus	90.09	0.00e+00	830.00
IUUC-Gma-043478	Glycine max	38.57	9.00e-83	300.00
IUUC-Ggo-045302	Gorilla gorilla	94.43	0.00e+00	865.00
IUUC-Hsa-045678	Homo sapiens	94.43	0.00e+00	865.00
IUUC-Hvu-047301	Hordeum vulgare	43.62	2.00e-81	295.00
IUUC-Itr-048259	Ictidomys tridecemlineatus	94.66	0.00e+00	868.00
IUUC-Lpe-051440	Leersia perrieri	40.13	3.00e-66	245.00
IUUC-Loc-052035	Lepisosteus oculatus	92.81	0.00e+00	853.00
IUUC-Laf-054275	Loxodonta africana	94.66	0.00e+00	868.00
IUUC-Mcc-055857	Macaca mulatta	81.44	0.00e+00	714.00
IUUC-Meu-056194	Macropus eugenii	98.10	1.00e-90	325.00
IUUC-Mtr-058667	Medicago truncatula	38.18	2.00e-76	279.00
IUUC-Mga-059710	Meleagris gallopavo	94.90	0.00e+00	867.00
IUUC-Mmr-060604	Microcebus murinus	94.66	0.00e+00	868.00
IUUC-Mdo-062953	Monodelphis domestica	95.13	0.00e+00	873.00
IUUC-Mmu-064292	Mus musculus	94.43	0.00e+00	867.00
IUUC-Mac-064568	Musa acuminata	43.64	6.00e-78	283.00
IUUC-Mpu-066294	Mustela putorius furo	63.29	7.00e-153	533.00
IUUC-Mlu-067995	Myotis lucifugus	94.20	0.00e+00	862.00
IUUC-Nle-069322	Nomascus leucogenys	94.43	0.00e+00	865.00
IUUC-Opr-070580	Ochotona princeps	94.66	0.00e+00	867.00
IUUC-Ont-072554	Oreochromis niloticus	92.11	0.00e+00	850.00
IUUC-Oan-072856	Ornithorhynchus anatinus	94.66	0.00e+00	869.00
IUUC-Ocu-074150	Oryctolagus cuniculus	82.72	0.00e+00	729.00
IUUC-Oba-075585	Oryza barthii	39.01	2.00e-70	259.00
IUUC-Obr-076069	Oryza brachyantha	40.95	5.00e-75	274.00
IUUC-Ogl-077045	Oryza glaberrima	42.73	2.00e-79	289.00
IUUC-Ogu-078697	Oryza glumaepatula	42.86	8.00e-75	275.00
IUUC-Oin-080119	Oryza indica	42.73	2.00e-79	289.00
IUUC-Olo-081093	Oryza longistaminata	32.44	5.00e-45	176.00
IUUC-Ome-081718	Oryza meridionalis	35.31	6.00e-57	215.00
IUUC-Oni-082072	Oryza nivara	39.01	2.00e-70	259.00
IUUC-Opu-084080	Oryza punctata	35.61	7.00e-58	217.00
IUUC-Oru-085070	Oryza rufipogon	39.94	1.00e-69	258.00
IUUC-Osa-086149	Oryza sativa	42.73	2.00e-79	289.00
IUUC-Ola-086697	Oryzias latipes	91.18	0.00e+00	844.00
IUUC-Oga-088697	Otolemur garnettii	94.66	0.00e+00	868.00
IUUC-Oar-089774	Ovis aries	94.66	0.00e+00	870.00
IUUC-Ptr-090924	Pan troglodytes	94.43	0.00e+00	865.00
IUUC-Pan-092373	Papio anubis	94.43	0.00e+00	865.00
IUUC-Psi-094001	Pelodiscus sinensis	94.90	0.00e+00	869.00
IUUC-Pma-094274	Petromyzon marinus	73.66	0.00e+00	694.00
IUUC-Ppa-095562	Physcomitrella patens	36.83	2.00e-81	296.00
IUUC-Pfo-097235	Poecilia formosa	92.11	0.00e+00	850.00
IUUC-Pab-098608	Pongo abelii	94.43	0.00e+00	865.00
IUUC-Pca-100268	Procavia capensis	94.90	0.00e+00	869.00
IUUC-Ppe-101425	Prunus persica	41.31	1.00e-81	296.00
IUUC-Pva-103183	Pteropus vampyrus	94.66	0.00e+00	868.00
IUUC-Rno-105097	Rattus norvegicus	94.43	0.00e+00	867.00
IUUC-Sha-107642	Sarcophilus harrisii	95.13	0.00e+00	873.00
IUUC-Smo-108680	Selaginella moellendorffii	35.83	1.00e-77	283.00
IUUC-Sit-110471	Setaria italica	40.89	4.00e-82	298.00
IUUC-Sly-111143	Solanum lycopersicum	33.19	7.00e-33	134.00
IUUC-Stu-111926	Solanum tuberosum	44.10	3.00e-33	134.00
IUUC-Sar-112947	Sorex araneus	96.88	3.00e-169	587.00
IUUC-Sbi-113769	Sorghum bicolor	43.03	1.00e-79	289.00
IUUC-Ssc-115736	Sus scrofa	94.66	0.00e+00	868.00
IUUC-Tgu-117457	Taeniopygia guttata	95.13	0.00e+00	870.00
IUUC-Tru-117760	Takifugu rubripes	90.72	0.00e+00	842.00
IUUC-Tsy-118943	Tarsius syrichta	93.74	0.00e+00	853.00
IUUC-Tni-120081	Tetraodon nigroviridis	91.42	0.00e+00	845.00
IUUC-Tca-121190	Theobroma cacao	39.95	2.00e-85	308.00
IUUC-Tae-125535	Triticum aestivum	44.81	3.00e-84	305.00
IUUC-Tur-126329	Triticum urartu	44.81	1.00e-83	303.00
IUUC-Tbe-127878	Tupaia belangeri	93.16	0.00e+00	842.00
IUUC-Ttr-128985	Tursiops truncatus	94.66	0.00e+00	868.00
IUUC-Vpa-130147	Vicugna pacos	94.43	0.00e+00	866.00
IUUC-Vvi-130935	Vitis vinifera	39.30	1.00e-84	306.00
IUUC-Xtr-132482	Xenopus tropicalis	93.74	0.00e+00	862.00
IUUC-Xma-133929	Xiphophorus maculatus	92.11	0.00e+00	850.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence