iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSMMUG00000000072.3	ENSMMUT00000071034.1	ENSMMUP00000060814.1
ENSMMUG00000000072.3	ENSMMUT00000000102.3	ENSMMUP00000000092.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.20e-18	65.8	214	251
UBD/Beta-Prp	5.40e-55	187.8	165	383

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           +Htd ++++++ s+ ++ v+Gs Dg ik+WD  +++++
   Q: 214  QHTDAICSVNYnSSaNMYVTGSKDGCIKLWDGVSNRCI 251
           5**********9777777*************8888775 PP

UBD/Beta-Prp

   S: 89   tlkghe.dsvlslsfspsgdklvsGshdrtirvwdletgqclee..tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrt 174
           tl  he ++++s+sf+psgd++++G+++ t+r++d++t qc+ +  ++++h++++++v++++++n++v+Gs+D++++lWd  ++++++t
   Q: 165  TLYDHEaEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVScnPQDQHTDAICSVNYNSSANMYVTGSKDGCIKLWDGVSNRCITT 253
           55555417899*********************************99******************************************* PP
   S: 175  ltgghtdsvysls.fdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfs....pnderlvsgssDgsiri..Wdlrsgdl 256
           ++++h+++  + + f++n+k+++s ++d+  klw+++tg+++++++g     ++v+ +    +++e +v   ++++i++  Wd+r+ + 
   Q: 254  FEKAHDGAEVCSAiFSKNSKYILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTqavfNHTEDYVLLPDERTISLccWDSRTAER 342
           *9999998777666***********************************99999888877789**************9888******** PP
   S: 257  lktlqlhnssvisvavlsfgdnvlvlgsedskvniwklkkn 297
            + l+l +++++ + v+s++++ ++++s+d ++++w  +++
   Q: 343  RNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFWYRRST 383
           ************************************98765 PP

Organism

Macaca mulatta

Protein Sequence
(Fasta)

MYRTKVGLKD RQQLYKLIIS QLLYDGYISI ANGLINEIKP QSVCAPSEQL LHLIKLGMEN 60
DDTAVQYAIG RSDTVAPGTG IDLEFDADVQ TMSPEASEYE TCYVTSHKGP CRVATYSRDG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGTGGCGGAG CCAACGGCCA GCCAGACCCG TGGCAGTGCC AGCCCCAGGG TACTCTCCGG 60
GGTCGGCCAT TTATCGGTGA GGCAGCAGCC CCTTGACGTC AAGCTTGTCG CATTGGAGAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR032028--CSTF1_dimer
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF16699--CSTF1_dimer
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005654--C:nucleoplasm
GO:0003723--F:RNA binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002163	Ailuropoda melanoleuca	81.71	0.00e+00	704.00
IUUC-Atr-002687	Amborella trichopoda	32.96	9.00e-45	174.00
IUUC-Apl-003438	Anas platyrhynchos	80.32	0.00e+00	696.00
IUUC-Aca-005178	Anolis carolinensis	79.40	0.00e+00	691.00
IUUC-Aly-005791	Arabidopsis lyrata	32.54	2.00e-60	226.00
IUUC-Ath-006689	Arabidopsis thaliana	33.73	4.00e-61	228.00
IUUC-Ame-011217	Astyanax mexicanus	77.36	9.00e-123	432.00
IUUC-Bta-012619	Bos taurus	81.48	0.00e+00	703.00
IUUC-Bdi-014515	Brachypodium distachyon	37.96	3.00e-59	222.00
IUUC-Bra-017450	Brassica rapa	31.98	5.00e-55	208.00
IUUC-Cel-018151	Caenorhabditis elegans	43.85	3.00e-103	368.00
IUUC-Cja-019304	Callithrix jacchus	81.94	0.00e+00	707.00
IUUC-Cfa-020208	Canis familiaris	81.71	0.00e+00	704.00
IUUC-Cpo-022245	Cavia porcellus	81.71	0.00e+00	704.00
IUUC-Csa-023066	Chlorocebus sabaeus	81.94	0.00e+00	707.00
IUUC-Cho-024770	Choloepus hoffmanni	78.93	1.00e-169	588.00
IUUC-Cin-025621	Ciona intestinalis	47.43	4.00e-113	401.00
IUUC-Csv-026071	Ciona savignyi	50.70	3.00e-125	441.00
IUUC-Dre-028254	Danio rerio	73.15	0.00e+00	636.00
IUUC-Dno-029903	Dasypus novemcinctus	81.71	0.00e+00	704.00
IUUC-Dor-030423	Dipodomys ordii	81.48	0.00e+00	704.00
IUUC-Dme-031993	Drosophila melanogaster	48.56	5.00e-108	384.00
IUUC-Ete-032689	Echinops telfairi	98.66	3.00e-82	298.00
IUUC-Eca-033316	Equus caballus	81.48	0.00e+00	704.00
IUUC-Eeu-035001	Erinaceus europaeus	77.31	0.00e+00	664.00
IUUC-Fca-036447	Felis catus	81.71	0.00e+00	704.00
IUUC-Fal-037601	Ficedula albicollis	80.32	0.00e+00	696.00
IUUC-Gmo-038531	Gadus morhua	76.67	0.00e+00	666.00
IUUC-Gga-040869	Gallus gallus	80.09	0.00e+00	694.00
IUUC-Gac-042380	Gasterosteus aculeatus	71.95	1.00e-179	622.00
IUUC-Gma-043478	Glycine max	31.40	1.00e-54	207.00
IUUC-Ggo-045302	Gorilla gorilla	81.94	0.00e+00	707.00
IUUC-Hsa-045678	Homo sapiens	81.94	0.00e+00	707.00
IUUC-Hvu-047301	Hordeum vulgare	38.76	2.00e-60	226.00
IUUC-Itr-048259	Ictidomys tridecemlineatus	81.71	0.00e+00	704.00
IUUC-Lch-050319	Latimeria chalumnae	76.85	0.00e+00	670.00
IUUC-Lpe-051440	Leersia perrieri	36.54	3.00e-48	186.00
IUUC-Loc-052035	Lepisosteus oculatus	73.84	0.00e+00	640.00
IUUC-Laf-054275	Loxodonta africana	81.71	0.00e+00	704.00
IUUC-Meu-056194	Macropus eugenii	75.17	8.00e-57	213.00
IUUC-Mtr-058667	Medicago truncatula	37.72	2.00e-51	196.00
IUUC-Mga-059710	Meleagris gallopavo	80.09	0.00e+00	694.00
IUUC-Mmr-060604	Microcebus murinus	81.71	0.00e+00	704.00
IUUC-Mdo-062953	Monodelphis domestica	81.02	0.00e+00	700.00
IUUC-Mmu-064292	Mus musculus	81.48	0.00e+00	704.00
IUUC-Mac-064568	Musa acuminata	39.21	4.00e-53	201.00
IUUC-Mpu-066294	Mustela putorius furo	99.54	8.00e-131	460.00
IUUC-Mlu-067995	Myotis lucifugus	80.79	0.00e+00	695.00
IUUC-Nle-069322	Nomascus leucogenys	81.94	0.00e+00	707.00
IUUC-Opr-070580	Ochotona princeps	81.25	0.00e+00	701.00
IUUC-Ont-072554	Oreochromis niloticus	74.07	0.00e+00	643.00
IUUC-Oan-072856	Ornithorhynchus anatinus	80.79	0.00e+00	697.00
IUUC-Ocu-074150	Oryctolagus cuniculus	69.75	3.00e-162	564.00
IUUC-Oba-075585	Oryza barthii	47.45	3.00e-49	189.00
IUUC-Obr-076069	Oryza brachyantha	38.41	7.00e-56	211.00
IUUC-Ogl-077045	Oryza glaberrima	36.86	4.00e-60	225.00
IUUC-Ogu-078697	Oryza glumaepatula	36.81	2.00e-57	218.00
IUUC-Oin-080119	Oryza indica	36.86	4.00e-60	225.00
IUUC-Olo-081093	Oryza longistaminata	34.13	8.00e-43	169.00
IUUC-Ome-081718	Oryza meridionalis	35.23	4.00e-51	196.00
IUUC-Oni-082072	Oryza nivara	47.45	3.00e-49	189.00
IUUC-Opu-084080	Oryza punctata	37.97	1.00e-51	196.00
IUUC-Oru-085070	Oryza rufipogon	34.09	8.00e-55	209.00
IUUC-Osa-086149	Oryza sativa	36.86	4.00e-60	225.00
IUUC-Ola-086697	Oryzias latipes	73.61	0.00e+00	643.00
IUUC-Oga-088697	Otolemur garnettii	81.71	0.00e+00	704.00
IUUC-Oar-089774	Ovis aries	81.71	0.00e+00	705.00
IUUC-Ptr-090924	Pan troglodytes	81.94	0.00e+00	707.00
IUUC-Pan-092373	Papio anubis	81.94	0.00e+00	706.00
IUUC-Psi-094001	Pelodiscus sinensis	80.09	0.00e+00	694.00
IUUC-Pma-094274	Petromyzon marinus	58.37	9.00e-148	516.00
IUUC-Ppa-095562	Physcomitrella patens	32.41	4.00e-60	225.00
IUUC-Pfo-097235	Poecilia formosa	74.07	0.00e+00	643.00
IUUC-Pab-098608	Pongo abelii	81.94	0.00e+00	707.00
IUUC-Pca-100268	Procavia capensis	81.48	0.00e+00	703.00
IUUC-Ppe-101425	Prunus persica	41.76	8.00e-56	211.00
IUUC-Pva-103183	Pteropus vampyrus	81.71	0.00e+00	704.00
IUUC-Rno-105097	Rattus norvegicus	81.48	0.00e+00	704.00
IUUC-Sha-107642	Sarcophilus harrisii	81.02	0.00e+00	700.00
IUUC-Smo-108680	Selaginella moellendorffii	32.08	3.00e-57	215.00
IUUC-Sit-110471	Setaria italica	36.88	2.00e-61	230.00
IUUC-Stu-111926	Solanum tuberosum	45.34	1.00e-33	135.00
IUUC-Sar-112947	Sorex araneus	72.66	1.00e-113	402.00
IUUC-Sbi-113769	Sorghum bicolor	38.46	6.00e-59	221.00
IUUC-Ssc-115736	Sus scrofa	81.71	0.00e+00	704.00
IUUC-Tgu-117457	Taeniopygia guttata	80.32	0.00e+00	696.00
IUUC-Tru-117760	Takifugu rubripes	73.38	0.00e+00	641.00
IUUC-Tsy-118943	Tarsius syrichta	86.95	0.00e+00	753.00
IUUC-Tni-120081	Tetraodon nigroviridis	74.07	0.00e+00	644.00
IUUC-Tca-121190	Theobroma cacao	35.95	2.00e-64	239.00
IUUC-Tae-123709	Triticum aestivum	40.00	9.00e-62	230.00
IUUC-Tur-126329	Triticum urartu	39.05	2.00e-61	230.00
IUUC-Tbe-127878	Tupaia belangeri	80.71	0.00e+00	684.00
IUUC-Ttr-128985	Tursiops truncatus	81.71	0.00e+00	704.00
IUUC-Vpa-130147	Vicugna pacos	81.48	0.00e+00	702.00
IUUC-Vvi-130935	Vitis vinifera	35.46	4.00e-62	232.00
IUUC-Xtr-132482	Xenopus tropicalis	77.55	0.00e+00	670.00
IUUC-Xma-133929	Xiphophorus maculatus	74.07	0.00e+00	643.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence