iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ont-072554

Ensembl Protein ID

ENSONIP00000004052.1

UniProt Accession

I3J5B2; I3J5B2_ORENI

Genbank Protein ID

ENSONIP00000004052

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AERX01016035

Gene Name

cstf1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSONIG00000003227.1	ENSONIT00000004053.1	ENSONIP00000004052.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-28	98.6	172	202
UBD/Beta-Prp	2.70e-73	247.1	102	428

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDl 30
           H d+vtclaf ++  +l+sGs+D t+k++D+
   Q: 172  HVDEVTCLAFhPTeQILASGSRDYTLKLFDY 202
           9**********77799**************7 PP

UBD/Beta-Prp

   S: 4    tlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkl.......................lrslsgheaevtavkfspdgkilvt 69
           ++ ++hk+++++ ++s+d++l+atgs+d++ik+ d++++ +                       +r+l++h +evt++ f+p+++il++
   Q: 102  CYVTSHKGPCRVATYSRDGQLIATGSADASIKILDTERMLAksampievmmnetaqqnmenhpvIRTLYDHVDEVTCLAFHPTEQILAS 190
           67889*********************************988************************************************ PP
   S: 70   gseDrtikvwdlstgkcvhtlk..ghedsvlslsfspsgdklvsGshdrtirvwdletgqclee..tlsghdgvvncvvvhpdgnllvs 154
           gs+D+t+k++d+s+++  +++k  ++ ++++s+sf+psgd+l++G+++ t+r++d++t qc+ +  +l++h++++++v+++p++n +v+
   Q: 191  GSRDYTLKLFDYSKPSAKRAFKyiQEAEMLRSISFHPSGDFLLVGTQHPTLRLYDVNTFQCFVScnPLDQHTDTISGVSYNPTANSYVT 279
           *****************99999999***************************************99*********************** PP
   S: 155  GslDrtvrlWdlktgkllrtltgghtdsvysls.fdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfs....pnderlv 238
           +s+D+ ++lWd  ++++++t++++h+++  + + f++n+k+++s ++d+ vklw+++tg+++++++g     ++++ +    +++e +v
   Q: 280  CSKDGSIKLWDGVSNRCVTTFEKAHDGAEVCSAiFSKNSKYILSSGKDSVVKLWEISTGRTLVKYTGAGLSGRQMHRTqgvfNHTEDYV 368
           *********************9999998777666***********************************99999999988889****** PP
   S: 239  sgssDgsiri..Wdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwklkk 296
              ++++i++  Wd+r+ +  + l+l +++++ + v+s++++ ++++s+d ++++w  ++
   Q: 369  LLPDERTISLccWDSRTAERKNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFWYRRT 428
           ********9888********************************************9875 PP

Organism

Oreochromis niloticus

Protein Sequence
(Fasta)

MFRPKPTLKD RQHLYKLIIS QLLYDGYTSI ANSLINEVKP QSVVSPSEQL MQLAKIGMEN 60
DDSAVQYAIG RSDTVAPGVG IDLEFDADVQ TMSPEASEYE TCYVTSHKGP CRVATYSRDG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTTTCGTC CCAAACCGAC TCTGAAGGAC CGACAGCACC TGTACAAGCT TATCATCAGC 60
CAGCTGCTCT ACGATGGATA CACTAGCATC GCCAACAGTC TCATCAATGA GGTGAAGCCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR032028--CSTF1_dimer
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF16699--CSTF1_dimer
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002163	Ailuropoda melanoleuca	92.11	0.00e+00	845.00
IUUC-Atr-002687	Amborella trichopoda	37.91	2.00e-65	243.00
IUUC-Apl-003438	Anas platyrhynchos	91.65	0.00e+00	842.00
IUUC-Aca-005178	Anolis carolinensis	92.34	0.00e+00	846.00
IUUC-Aly-005791	Arabidopsis lyrata	37.26	7.00e-79	287.00
IUUC-Ath-006689	Arabidopsis thaliana	37.74	4.00e-79	288.00
IUUC-Ame-011217	Astyanax mexicanus	96.48	1.00e-169	588.00
IUUC-Bta-012619	Bos taurus	92.34	0.00e+00	846.00
IUUC-Bdi-014515	Brachypodium distachyon	43.43	6.00e-78	284.00
IUUC-Bra-017450	Brassica rapa	40.27	9.00e-75	274.00
IUUC-Cel-018151	Caenorhabditis elegans	53.13	2.00e-134	472.00
IUUC-Cja-019304	Callithrix jacchus	91.88	0.00e+00	843.00
IUUC-Cfa-020208	Canis familiaris	92.11	0.00e+00	845.00
IUUC-Cpo-022245	Cavia porcellus	92.11	0.00e+00	845.00
IUUC-Csa-023066	Chlorocebus sabaeus	91.88	0.00e+00	843.00
IUUC-Cho-024770	Choloepus hoffmanni	94.65	0.00e+00	756.00
IUUC-Cin-025621	Ciona intestinalis	57.04	8.00e-150	523.00
IUUC-Csv-026071	Ciona savignyi	60.84	1.00e-160	559.00
IUUC-Dre-028254	Danio rerio	96.29	0.00e+00	881.00
IUUC-Dno-029903	Dasypus novemcinctus	92.11	0.00e+00	845.00
IUUC-Dor-030423	Dipodomys ordii	92.34	0.00e+00	845.00
IUUC-Dme-031993	Drosophila melanogaster	53.86	7.00e-130	457.00
IUUC-Ete-032689	Echinops telfairi	87.92	2.00e-73	269.00
IUUC-Eca-033316	Equus caballus	91.88	0.00e+00	844.00
IUUC-Eeu-035001	Erinaceus europaeus	88.63	0.00e+00	811.00
IUUC-Fca-036447	Felis catus	92.11	0.00e+00	845.00
IUUC-Fal-037601	Ficedula albicollis	91.65	0.00e+00	842.00
IUUC-Gmo-038531	Gadus morhua	94.69	0.00e+00	857.00
IUUC-Gga-040869	Gallus gallus	91.42	0.00e+00	840.00
IUUC-Gac-042380	Gasterosteus aculeatus	95.62	0.00e+00	872.00
IUUC-Gma-043478	Glycine max	38.33	2.00e-81	296.00
IUUC-Ggo-045302	Gorilla gorilla	91.88	0.00e+00	843.00
IUUC-Hsa-045678	Homo sapiens	91.88	0.00e+00	843.00
IUUC-Hvu-047301	Hordeum vulgare	43.32	8.00e-80	290.00
IUUC-Itr-048259	Ictidomys tridecemlineatus	92.11	0.00e+00	845.00
IUUC-Lch-050319	Latimeria chalumnae	92.11	0.00e+00	850.00
IUUC-Lpe-051440	Leersia perrieri	40.76	1.00e-66	247.00
IUUC-Loc-052035	Lepisosteus oculatus	96.29	0.00e+00	879.00
IUUC-Laf-054275	Loxodonta africana	92.11	0.00e+00	845.00
IUUC-Mcc-055857	Macaca mulatta	78.65	0.00e+00	690.00
IUUC-Meu-056194	Macropus eugenii	99.37	5.00e-92	330.00
IUUC-Mtr-058667	Medicago truncatula	36.45	4.00e-75	275.00
IUUC-Mga-059710	Meleagris gallopavo	91.42	0.00e+00	840.00
IUUC-Mmr-060604	Microcebus murinus	92.11	0.00e+00	845.00
IUUC-Mdo-062953	Monodelphis domestica	92.11	0.00e+00	846.00
IUUC-Mmu-064292	Mus musculus	91.88	0.00e+00	845.00
IUUC-Mac-064568	Musa acuminata	43.64	3.00e-77	281.00
IUUC-Mpu-066294	Mustela putorius furo	61.21	5.00e-146	511.00
IUUC-Mlu-067995	Myotis lucifugus	91.18	0.00e+00	836.00
IUUC-Nle-069322	Nomascus leucogenys	91.88	0.00e+00	843.00
IUUC-Opr-070580	Ochotona princeps	92.58	0.00e+00	848.00
IUUC-Oan-072856	Ornithorhynchus anatinus	91.65	0.00e+00	842.00
IUUC-Ocu-074150	Oryctolagus cuniculus	80.41	0.00e+00	707.00
IUUC-Oba-075585	Oryza barthii	38.63	2.00e-68	253.00
IUUC-Obr-076069	Oryza brachyantha	40.95	2.00e-75	276.00
IUUC-Ogl-077045	Oryza glaberrima	43.03	2.00e-79	289.00
IUUC-Ogu-078697	Oryza glumaepatula	43.16	7.00e-75	276.00
IUUC-Oin-080119	Oryza indica	43.03	2.00e-79	289.00
IUUC-Olo-081093	Oryza longistaminata	32.74	2.00e-44	175.00
IUUC-Ome-081718	Oryza meridionalis	35.61	3.00e-56	213.00
IUUC-Oni-082072	Oryza nivara	38.63	2.00e-68	253.00
IUUC-Opu-084080	Oryza punctata	35.91	5.00e-57	215.00
IUUC-Oru-085070	Oryza rufipogon	40.12	3.00e-68	254.00
IUUC-Osa-086149	Oryza sativa	43.03	2.00e-79	289.00
IUUC-Ola-086697	Oryzias latipes	98.61	0.00e+00	900.00
IUUC-Oga-088697	Otolemur garnettii	92.11	0.00e+00	845.00
IUUC-Oar-089774	Ovis aries	92.11	0.00e+00	846.00
IUUC-Ptr-090924	Pan troglodytes	91.88	0.00e+00	843.00
IUUC-Pan-092373	Papio anubis	91.88	0.00e+00	842.00
IUUC-Psi-094001	Pelodiscus sinensis	91.65	0.00e+00	839.00
IUUC-Pma-094274	Petromyzon marinus	75.99	0.00e+00	712.00
IUUC-Ppa-095562	Physcomitrella patens	36.60	1.00e-79	290.00
IUUC-Pfo-097235	Poecilia formosa	98.14	0.00e+00	895.00
IUUC-Pab-098608	Pongo abelii	91.88	0.00e+00	843.00
IUUC-Pca-100268	Procavia capensis	92.34	0.00e+00	846.00
IUUC-Ppe-101425	Prunus persica	45.76	9.00e-81	294.00
IUUC-Pva-103183	Pteropus vampyrus	92.11	0.00e+00	845.00
IUUC-Rno-105097	Rattus norvegicus	91.88	0.00e+00	845.00
IUUC-Sha-107642	Sarcophilus harrisii	92.11	0.00e+00	846.00
IUUC-Smo-108680	Selaginella moellendorffii	36.13	1.00e-77	283.00
IUUC-Sit-110471	Setaria italica	41.93	5.00e-82	299.00
IUUC-Sly-111143	Solanum lycopersicum	33.47	1.00e-33	137.00
IUUC-Stu-111926	Solanum tuberosum	45.00	9.00e-33	132.00
IUUC-Sar-112947	Sorex araneus	94.44	1.00e-165	575.00
IUUC-Sbi-113769	Sorghum bicolor	43.62	2.00e-79	290.00
IUUC-Ssc-115736	Sus scrofa	92.11	0.00e+00	845.00
IUUC-Tgu-117457	Taeniopygia guttata	91.65	0.00e+00	842.00
IUUC-Tru-117760	Takifugu rubripes	97.22	0.00e+00	892.00
IUUC-Tsy-118943	Tarsius syrichta	91.18	0.00e+00	830.00
IUUC-Tni-120081	Tetraodon nigroviridis	97.91	0.00e+00	896.00
IUUC-Tca-121190	Theobroma cacao	40.89	7.00e-86	311.00
IUUC-Tae-125535	Triticum aestivum	44.51	9.00e-83	300.00
IUUC-Tur-126329	Triticum urartu	43.92	8.00e-82	298.00
IUUC-Tbe-127878	Tupaia belangeri	91.27	0.00e+00	822.00
IUUC-Ttr-128985	Tursiops truncatus	92.11	0.00e+00	845.00
IUUC-Vpa-130147	Vicugna pacos	91.88	0.00e+00	843.00
IUUC-Vvi-130935	Vitis vinifera	39.53	2.00e-83	303.00
IUUC-Xtr-132482	Xenopus tropicalis	90.95	0.00e+00	840.00
IUUC-Xma-133929	Xiphophorus maculatus	98.14	0.00e+00	895.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence