iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Ssc-116134

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

FP102572

Gene Name

RNF40

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000007786.2	ENSSSCT00000008534.2	ENSSSCP00000008315.2

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	30.00	7.00e-29	126.00	IUUC-Ath-007462
E3 activity/RING/RING	42.34	0.00e+00	692.00	IUUC-Dme-032034
E3 activity/RING/RING	94.71	0.00e+00	1700.00	IUUC-Hsa-045732
E3 activity/RING/RING	91.72	0.00e+00	1646.00	IUUC-Rno-105165

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Sus scrofa

Protein Sequence
(Fasta)

MSGPGNKRAA GDGGSGPPEK KLNREEKTTT TLIEPIRLGG ISSTEEMDLK VLQFKNKKLA 60
ERLEQRQACE DELRERIEKL EKRQATDDAT LLIVNRYWAQ LDETVEALLR HHESQGELSS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCCCTCTCTT CGAAGTTGTT AATCTGAGGC AGGCGGCGTT ATTAGGACTG CGGAGTGGAA 60
GTGTGTTGTC AGTTACCATG GCAACTGCCT ACCGGCCAAT CACTGAGAGA AAGAGGAGGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0033503--C:HULC complex
GO:0016020--C:membrane
GO:0005654--C:nucleoplasm
GO:0003730--F:mRNA 3'-UTR binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0033523--P:histone H2B ubiquitination
GO:0010390--P:histone monoubiquitination
GO:1900364--P:negative regulation of mRNA polyadenylation
GO:2001168--P:positive regulation of histone H2B ubiquitination

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001027	Aegilops tauschii	29.83	1.00e-12	68.20
IUUC-Aml-002295	Ailuropoda melanoleuca	97.00	0.00e+00	1733.00
IUUC-Atr-002836	Amborella trichopoda	30.51	8.00e-25	108.00
IUUC-Aca-004850	Anolis carolinensis	76.14	0.00e+00	679.00
IUUC-Aly-006055	Arabidopsis lyrata	27.85	5.00e-28	119.00
IUUC-Ath-007462	Arabidopsis thaliana	28.37	2.00e-28	120.00
IUUC-Ame-011745	Astyanax mexicanus	78.15	5.00e-150	525.00
IUUC-Bta-013173	Bos taurus	96.50	0.00e+00	1716.00
IUUC-Bci-013926	Botrytis cinerea	37.74	2.00e-08	54.30
IUUC-Bdi-015006	Brachypodium distachyon	51.52	1.00e-16	81.60
IUUC-Bol-015858	Brassica oleracea	28.91	8.00e-33	135.00
IUUC-Bra-016804	Brassica rapa	29.44	4.00e-34	139.00
IUUC-Cja-019042	Callithrix jacchus	94.01	0.00e+00	1624.00
IUUC-Cfa-020318	Canis familiaris	96.50	0.00e+00	1723.00
IUUC-Cpo-021539	Cavia porcellus	94.01	0.00e+00	1679.00
IUUC-Cre-022940	Chlamydomonas reinhardtii	37.93	8.00e-09	55.50
IUUC-Csa-024051	Chlorocebus sabaeus	95.00	0.00e+00	1593.00
IUUC-Cin-025174	Ciona intestinalis	42.86	0.00e+00	675.00
IUUC-Cgl-026569	Colletotrichum gloeosporioides	42.31	7.00e-10	58.90
IUUC-Dre-028171	Danio rerio	79.55	9.00e-150	524.00
IUUC-Dno-028892	Dasypus novemcinctus	94.71	0.00e+00	1637.00
IUUC-Dor-030268	Dipodomys ordii	93.91	0.00e+00	786.00
IUUC-Dme-032034	Drosophila melanogaster	42.36	0.00e+00	697.00
IUUC-Ete-032505	Echinops telfairi	88.40	7.00e-177	613.00
IUUC-Eca-033436	Equus caballus	95.90	0.00e+00	1735.00
IUUC-Eeu-035291	Erinaceus europaeus	89.03	0.00e+00	1281.00
IUUC-Fca-035720	Felis catus	96.10	0.00e+00	1720.00
IUUC-Fso-038414	Fusarium solani	40.38	1.00e-09	58.50
IUUC-Gmo-039269	Gadus morhua	78.65	4.00e-139	488.00
IUUC-Gac-041303	Gasterosteus aculeatus	64.58	1.00e-153	537.00
IUUC-Gma-042797	Glycine max	29.04	1.00e-35	144.00
IUUC-Ggo-045426	Gorilla gorilla	94.91	0.00e+00	1672.00
IUUC-Hsa-045732	Homo sapiens	94.71	0.00e+00	1702.00
IUUC-Itr-048724	Ictidomys tridecemlineatus	95.30	0.00e+00	1677.00
IUUC-Kpa-049345	Komagataella pastoris	27.59	1.00e-10	61.20
IUUC-Lch-049429	Latimeria chalumnae	82.20	3.00e-155	541.00
IUUC-Lpe-051253	Leersia perrieri	30.87	5.00e-32	132.00
IUUC-Loc-052847	Lepisosteus oculatus	77.37	3.00e-65	241.00
IUUC-Laf-054267	Loxodonta africana	94.81	0.00e+00	1687.00
IUUC-Mcc-055240	Macaca mulatta	95.00	0.00e+00	1595.00
IUUC-Meu-056750	Macropus eugenii	83.04	0.00e+00	1395.00
IUUC-Mor-057068	Magnaporthe oryzae	45.28	2.00e-12	67.40
IUUC-Mtr-057632	Medicago truncatula	28.30	2.00e-32	134.00
IUUC-Mvi-060341	Microbotryum violaceum	28.91	3.00e-21	97.10
IUUC-Mmr-061177	Microcebus murinus	95.40	0.00e+00	1691.00
IUUC-Mdo-062415	Monodelphis domestica	83.63	0.00e+00	1422.00
IUUC-Mmu-063981	Mus musculus	92.01	0.00e+00	1631.00
IUUC-Mac-065103	Musa acuminata	30.33	2.00e-41	164.00
IUUC-Mpu-066498	Mustela putorius furo	95.70	0.00e+00	1640.00
IUUC-Mlu-067242	Myotis lucifugus	94.91	0.00e+00	1687.00
IUUC-Nle-069320	Nomascus leucogenys	93.51	0.00e+00	821.00
IUUC-Opr-070286	Ochotona princeps	91.35	0.00e+00	1019.00
IUUC-Ont-071299	Oreochromis niloticus	79.17	1.00e-150	526.00
IUUC-Oan-073538	Ornithorhynchus anatinus	77.89	0.00e+00	631.00
IUUC-Ocu-073799	Oryctolagus cuniculus	95.00	0.00e+00	1679.00
IUUC-Oba-075000	Oryza barthii	27.91	5.00e-28	119.00
IUUC-Obr-076532	Oryza brachyantha	29.10	5.00e-31	129.00
IUUC-Ogl-077200	Oryza glaberrima	29.56	1.00e-30	128.00
IUUC-Ogu-078279	Oryza glumaepatula	27.91	4.00e-28	119.00
IUUC-Oin-079097	Oryza indica	29.56	1.00e-30	128.00
IUUC-Olo-080612	Oryza longistaminata	53.33	3.00e-15	77.80
IUUC-Ome-081304	Oryza meridionalis	29.43	2.00e-29	124.00
IUUC-Oni-082162	Oryza nivara	27.91	6.00e-28	119.00
IUUC-Opu-083683	Oryza punctata	51.52	2.00e-16	81.30
IUUC-Oru-084382	Oryza rufipogon	27.91	6.00e-28	119.00
IUUC-Osa-085839	Oryza sativa	51.52	2.00e-16	81.30
IUUC-Ola-086435	Oryzias latipes	66.87	3.00e-156	545.00
IUUC-Oga-089016	Otolemur garnettii	88.69	0.00e+00	1551.00
IUUC-Oar-089589	Ovis aries	96.90	0.00e+00	1727.00
IUUC-Ptr-090530	Pan troglodytes	95.20	0.00e+00	1304.00
IUUC-Pan-092502	Papio anubis	95.00	0.00e+00	1597.00
IUUC-Psi-093155	Pelodiscus sinensis	74.09	2.00e-143	502.00
IUUC-Pfo-097527	Poecilia formosa	52.64	0.00e+00	730.00
IUUC-Pab-098619	Pongo abelii	95.30	0.00e+00	1682.00
IUUC-Pop-099376	Populus trichocarpa	29.41	4.00e-34	139.00
IUUC-Pca-100544	Procavia capensis	94.31	0.00e+00	1675.00
IUUC-Ppe-102065	Prunus persica	32.11	2.00e-30	127.00
IUUC-Pva-102479	Pteropus vampyrus	95.19	0.00e+00	1398.00
IUUC-Pte-104415	Pyrenophora teres	28.94	3.00e-14	73.60
IUUC-Pyt-104762	Pyrenophora triticirepentis	35.71	2.00e-13	70.90
IUUC-Rno-105165	Rattus norvegicus	91.72	0.00e+00	1617.00
IUUC-Sha-107602	Sarcophilus harrisii	84.81	0.00e+00	1443.00
IUUC-Ssl-108546	Sclerotinia sclerotiorum	37.74	9.00e-09	55.50
IUUC-Sit-109889	Setaria italica	27.46	1.00e-29	124.00
IUUC-Sly-111490	Solanum lycopersicum	33.08	3.00e-41	163.00
IUUC-Sar-113755	Sorex araneus	92.46	0.00e+00	1331.00
IUUC-Tru-117867	Takifugu rubripes	63.11	8.00e-151	527.00
IUUC-Tsy-119065	Tarsius syrichta	91.00	0.00e+00	1454.00
IUUC-Tni-120802	Tetraodon nigroviridis	64.27	0.00e+00	997.00
IUUC-Tca-121060	Theobroma cacao	32.39	1.00e-38	154.00
IUUC-Tre-122150	Trichoderma reesei	41.51	1.00e-10	61.20
IUUC-Tvi-122431	Trichoderma virens	41.51	2.00e-10	61.20
IUUC-Tur-126160	Triticum urartu	50.00	5.00e-16	79.70
IUUC-Tme-127177	Tuber melanosporum	24.20	4.00e-11	63.20
IUUC-Tbe-127597	Tupaia belangeri	85.32	0.00e+00	1027.00
IUUC-Ttr-128303	Tursiops truncatus	96.12	0.00e+00	1668.00
IUUC-Vda-129815	Verticillium dahliae	40.38	9.00e-10	58.50
IUUC-Vvi-131316	Vitis vinifera	31.93	6.00e-35	142.00
IUUC-Xtr-132906	Xenopus tropicalis	69.22	0.00e+00	656.00
IUUC-Xma-133607	Xiphophorus maculatus	78.61	1.00e-147	517.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence