iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000060626.1	ENSRNOT00000078639.1	ENSRNOP00000073092.1
ENSRNOG00000060626.1	ENSRNOT00000091418.1	ENSRNOP00000070520.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
RAID2
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/ZnF/UBZ	1.30e-15	57.6	762	787

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/ZnF/UBZ

   S: 2    lvCPvC...qkmvdqtdfeeHlDeCl 24
           lvCPvC   q++ d+t+f+ H+D Cl
   Q: 762  LVCPVCnleQETSDLTLFNIHVDICL 787
           89****988888*************8 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MDNTKEKNNF KDALLLRMGL NDNKAGMEGL DKEKINKIIM EATKGSRFYG NELKKEKQVN 60
QRIENMMQQK AQITSQQLRK AQLQVDRFAM ELERNRNLNN TIVHVDMDAF YAAVEMRDNP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAACTAGTGT GTGTGTCCTG GGCGCGCGAA AGACTGGTTG CCTAGGGGAA CCTTCTGAGA 60
GCAAGTGGGC TTCTTTTGAC AGTTGTGTGC CCCTTCGGTC CAGCCTGGCT TCCGATTCTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR017061--DNA_pol_eta/kappa
IPR017961--DNA_pol_Y-fam_little_finger
IPR022880--DNApol_IV
IPR001126--UmuC
IPR006642--Znf_Rad18_put

PROSITE

PS50173--UMUC

Pfam

PF00817--IMS
PF11799--IMS_C

SMART

SM00734--ZnF_Rad18

Gene Ontology

GO:0016604--C:nuclear body
GO:0003684--F:damaged DNA binding
GO:0003887--F:DNA-directed DNA polymerase activity
GO:0006297--P:nucleotide-excision repair, DNA gap filling

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001908	Ailuropoda melanoleuca	71.66	0.00e+00	1203.00
IUUC-Apl-003228	Anas platyrhynchos	62.33	0.00e+00	721.00
IUUC-Aca-005080	Anolis carolinensis	56.10	0.00e+00	822.00
IUUC-Afl-008688	Aspergillus flavus	40.20	5.00e-30	125.00
IUUC-Afu-008792	Aspergillus fumigatus	42.52	1.00e-47	184.00
IUUC-Aor-010225	Aspergillus oryzae	45.23	5.00e-44	172.00
IUUC-Ame-011889	Astyanax mexicanus	50.43	0.00e+00	696.00
IUUC-Bta-013127	Bos taurus	71.26	0.00e+00	1211.00
IUUC-Bra-017144	Brassica rapa	53.93	6.00e-59	222.00
IUUC-Cel-018629	Caenorhabditis elegans	43.62	3.00e-95	342.00
IUUC-Cja-019598	Callithrix jacchus	71.44	0.00e+00	1177.00
IUUC-Cfa-020661	Canis familiaris	71.18	0.00e+00	1187.00
IUUC-Cpo-022040	Cavia porcellus	67.63	0.00e+00	1094.00
IUUC-Csa-023669	Chlorocebus sabaeus	72.64	0.00e+00	1196.00
IUUC-Cho-024910	Choloepus hoffmanni	70.93	5.00e-91	329.00
IUUC-Csv-026293	Ciona savignyi	51.02	2.00e-130	459.00
IUUC-Dre-028317	Danio rerio	62.41	0.00e+00	647.00
IUUC-Dno-029973	Dasypus novemcinctus	71.05	0.00e+00	1186.00
IUUC-Dor-030667	Dipodomys ordii	71.64	0.00e+00	1208.00
IUUC-Dse-031339	Dothistroma septosporum	47.29	6.00e-50	192.00
IUUC-Ete-033030	Echinops telfairi	68.11	0.00e+00	1120.00
IUUC-Eca-033959	Equus caballus	72.82	0.00e+00	1207.00
IUUC-Fca-036160	Felis catus	69.58	0.00e+00	1167.00
IUUC-Fal-037116	Ficedula albicollis	54.21	0.00e+00	772.00
IUUC-Gmo-039003	Gadus morhua	50.06	0.00e+00	707.00
IUUC-Gga-040431	Gallus gallus	53.35	0.00e+00	795.00
IUUC-Gac-042455	Gasterosteus aculeatus	50.38	0.00e+00	690.00
IUUC-Gma-043303	Glycine max	53.26	4.00e-56	213.00
IUUC-Ggo-045024	Gorilla gorilla	71.85	0.00e+00	1201.00
IUUC-Hsa-046294	Homo sapiens	72.48	0.00e+00	1217.00
IUUC-Itr-048670	Ictidomys tridecemlineatus	71.24	0.00e+00	1159.00
IUUC-Lch-050251	Latimeria chalumnae	50.72	0.00e+00	753.00
IUUC-Loc-051939	Lepisosteus oculatus	56.82	0.00e+00	677.00
IUUC-Laf-054562	Loxodonta africana	67.32	0.00e+00	1093.00
IUUC-Mcc-055653	Macaca mulatta	72.82	0.00e+00	1229.00
IUUC-Meu-055994	Macropus eugenii	74.51	1.00e-142	500.00
IUUC-Mga-059228	Meleagris gallopavo	43.43	3.00e-173	602.00
IUUC-Mvi-060383	Microbotryum violaceum	38.86	4.00e-35	143.00
IUUC-Mmr-061202	Microcebus murinus	71.56	0.00e+00	1228.00
IUUC-Mdo-062829	Monodelphis domestica	61.92	0.00e+00	928.00
IUUC-Mmu-063675	Mus musculus	88.29	0.00e+00	1511.00
IUUC-Mpu-066825	Mustela putorius furo	71.07	0.00e+00	1184.00
IUUC-Mlu-067316	Myotis lucifugus	72.79	0.00e+00	1222.00
IUUC-Nle-069272	Nomascus leucogenys	72.51	0.00e+00	1216.00
IUUC-Opr-070616	Ochotona princeps	66.47	0.00e+00	1067.00
IUUC-Ont-072011	Oreochromis niloticus	47.01	0.00e+00	689.00
IUUC-Oan-073343	Ornithorhynchus anatinus	60.11	0.00e+00	939.00
IUUC-Ocu-073766	Oryctolagus cuniculus	65.82	0.00e+00	972.00
IUUC-Ogl-077190	Oryza glaberrima	46.03	2.00e-42	167.00
IUUC-Ogu-078415	Oryza glumaepatula	51.87	4.00e-56	212.00
IUUC-Osa-085963	Oryza sativa	46.03	1.00e-42	167.00
IUUC-Ola-087034	Oryzias latipes	48.96	0.00e+00	666.00
IUUC-Oga-088157	Otolemur garnettii	68.85	0.00e+00	1166.00
IUUC-Oar-089218	Ovis aries	71.05	0.00e+00	1222.00
IUUC-Ptr-091552	Pan troglodytes	72.48	0.00e+00	1220.00
IUUC-Pan-092646	Papio anubis	71.97	0.00e+00	1207.00
IUUC-Psi-093608	Pelodiscus sinensis	55.43	0.00e+00	842.00
IUUC-Pma-094381	Petromyzon marinus	49.56	0.00e+00	673.00
IUUC-Pno-095081	Phaeosphaeria nodorum	40.29	1.00e-39	157.00
IUUC-Pfo-096545	Poecilia formosa	50.93	0.00e+00	731.00
IUUC-Pab-097613	Pongo abelii	68.00	0.00e+00	1174.00
IUUC-Pca-101071	Procavia capensis	57.70	1.00e-133	469.00
IUUC-Pva-102252	Pteropus vampyrus	72.00	0.00e+00	1200.00
IUUC-Pgr-103567	Puccinia graminis	33.25	2.00e-41	164.00
IUUC-Ptt-103934	Puccinia triticina	26.50	1.00e-24	108.00
IUUC-Sha-107230	Sarcophilus harrisii	62.54	0.00e+00	1006.00
IUUC-Spo-108028	Schizosaccharomyces pombe	44.62	1.00e-42	167.00
IUUC-Sly-111390	Solanum lycopersicum	54.21	1.00e-59	224.00
IUUC-Stu-112284	Solanum tuberosum	54.45	3.00e-60	226.00
IUUC-Sar-113594	Sorex araneus	62.99	0.00e+00	1007.00
IUUC-Sre-115078	Sporisorium reilianum	40.30	4.00e-38	152.00
IUUC-Ssc-116013	Sus scrofa	70.31	0.00e+00	1214.00
IUUC-Tgu-117442	Taeniopygia guttata	53.70	0.00e+00	774.00
IUUC-Tru-117935	Takifugu rubripes	55.07	0.00e+00	639.00
IUUC-Tsy-119489	Tarsius syrichta	55.54	1.00e-161	563.00
IUUC-Tni-120543	Tetraodon nigroviridis	54.07	4.00e-173	601.00
IUUC-Tbe-128112	Tupaia belangeri	74.04	0.00e+00	760.00
IUUC-Ttr-128371	Tursiops truncatus	65.71	0.00e+00	1078.00
IUUC-Uma-129377	Ustilago maydis	29.51	4.00e-40	159.00
IUUC-Vpa-130243	Vicugna pacos	72.28	0.00e+00	1234.00
IUUC-Xtr-132453	Xenopus tropicalis	52.25	0.00e+00	764.00
IUUC-Xma-133255	Xiphophorus maculatus	50.55	0.00e+00	718.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence