iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT	UniProt
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.50e-06	29.1	302	371

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlp..sGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawce 70
           +p+e++Cp+ +e+M+d   ++  +  ++  ++I+ ++ s+   c   r+ +  +dl Pn+tlr++i++ +e
   Q: 302  LPPELKCPLCKEVMKDAALTSkcCYKSFCDKCIRDHIISKSM-CVCGRSDVLADDLLPNKTLRDTINRILE 371
           79***************9998778899**********99998.***********************98665 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MYFFAFYIRY KFSMAIYYKF KSARDYDTIA MDGPFISVGI LKDKIFETKH LGTGKDLDIV 60
VSNAQTNEEY LDEAMLIPKN TSVLIRRVPG RPRITVITTQ EPRIQNKVED VQAETTNFPV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATAAACACGG ATACGAGAGA AAGAGAGCTC TTGTGTCCAA ACCCTAGATT TCAAGATCGA 60
TCTATCTTCT TTCTCGTGAA GACACCGCTC TCTACTCGAT TCCTATGATT ACTCTCTAGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR014891--DWNN_domain
IPR025829--Zn_knuckle_CX2CX3GHX4C
IPR001878--Znf_CCHC
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51282--DWNN

Pfam

PF08783--DWNN
PF13696--zf-CCHC_2

SMART

SM01180--DWNN

Gene Ontology

GO:0005634--C:nucleus
GO:0003676--F:nucleic acid binding
GO:0016740--F:transferase activity
GO:0008270--F:zinc ion binding

KEGG

ath:AT5G47430

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000195	Aegilops tauschii	47.58	2.00e-119	422.00
IUUC-Aml-001655	Ailuropoda melanoleuca	31.44	5.00e-36	146.00
IUUC-Aca-004345	Anolis carolinensis	36.69	2.00e-20	94.70
IUUC-Aly-006444	Arabidopsis lyrata	92.53	0.00e+00	1329.00
IUUC-Ago-007949	Ashbya gossypii	28.45	2.00e-21	96.30
IUUC-Acl-008118	Aspergillus clavatus	29.65	2.00e-18	86.70
IUUC-Afl-008408	Aspergillus flavus	31.41	2.00e-11	62.80
IUUC-Afu-008777	Aspergillus fumigatus	27.39	2.00e-28	120.00
IUUC-Ani-009426	Aspergillus nidulans	29.56	3.00e-34	139.00
IUUC-Ang-009735	Aspergillus niger	28.75	1.00e-28	120.00
IUUC-Aor-010213	Aspergillus oryzae	29.33	5.00e-29	122.00
IUUC-Ate-010474	Aspergillus terreus	28.07	3.00e-26	112.00
IUUC-Ame-010679	Astyanax mexicanus	30.73	1.00e-37	152.00
IUUC-Bta-012672	Bos taurus	31.52	2.00e-36	147.00
IUUC-Bci-013880	Botrytis cinerea	26.13	6.00e-26	112.00
IUUC-Bdi-014276	Brachypodium distachyon	48.49	8.00e-122	431.00
IUUC-Bol-015602	Brassica oleracea	84.98	0.00e+00	802.00
IUUC-Bra-016670	Brassica rapa	83.93	0.00e+00	1034.00
IUUC-Cel-018532	Caenorhabditis elegans	27.73	2.00e-29	124.00
IUUC-Cja-018843	Callithrix jacchus	30.00	1.00e-29	125.00
IUUC-Cfa-021107	Canis familiaris	30.98	3.00e-36	147.00
IUUC-Cre-022712	Chlamydomonas reinhardtii	52.31	2.00e-13	69.70
IUUC-Csa-023397	Chlorocebus sabaeus	30.27	3.00e-37	150.00
IUUC-Csv-026162	Ciona savignyi	29.01	3.00e-09	54.70
IUUC-Cgl-026629	Colletotrichum gloeosporioides	32.42	5.00e-19	88.60
IUUC-Cne-026921	Cryptococcus neoformans	28.05	5.00e-32	132.00
IUUC-Cme-027244	Cyanidioschyzon merolae	48.10	7.00e-18	85.90
IUUC-Dno-029430	Dasypus novemcinctus	30.48	7.00e-26	113.00
IUUC-Dor-030406	Dipodomys ordii	30.36	7.00e-19	90.10
IUUC-Dme-032133	Drosophila melanogaster	27.99	6.00e-34	139.00
IUUC-Ete-032466	Echinops telfairi	34.88	5.00e-19	90.50
IUUC-Eca-033447	Equus caballus	31.23	1.00e-32	133.00
IUUC-Fca-035439	Felis catus	31.44	3.00e-36	147.00
IUUC-Fal-037230	Ficedula albicollis	31.52	1.00e-38	155.00
IUUC-Fox-037976	Fusarium oxysporum	26.02	1.00e-25	110.00
IUUC-Gmo-038618	Gadus morhua	32.43	1.00e-18	86.30
IUUC-Ggr-040035	Gaeumannomyces graminis	25.39	1.00e-20	94.00
IUUC-Gga-040908	Gallus gallus	31.44	5.00e-38	153.00
IUUC-Gac-041718	Gasterosteus aculeatus	33.33	6.00e-17	80.10
IUUC-Gma-044229	Glycine max	56.58	4.00e-177	614.00
IUUC-Ggo-044567	Gorilla gorilla	30.38	1.00e-36	149.00
IUUC-Hsa-046849	Homo sapiens	30.27	4.00e-37	150.00
IUUC-Hvu-047515	Hordeum vulgare	55.59	4.00e-78	283.00
IUUC-Itr-048832	Ictidomys tridecemlineatus	31.25	4.00e-36	147.00
IUUC-Kpa-049323	Komagataella pastoris	31.91	2.00e-14	72.80
IUUC-Lpe-050947	Leersia perrieri	47.05	2.00e-121	429.00
IUUC-Lma-053186	Leptosphaeria maculans	32.95	9.00e-19	87.80
IUUC-Laf-054472	Loxodonta africana	30.98	2.00e-36	148.00
IUUC-Mcc-055743	Macaca mulatta	30.27	3.00e-37	150.00
IUUC-Mpo-057378	Magnaporthe poae	24.40	2.00e-19	90.10
IUUC-Mtr-058761	Medicago truncatula	54.81	2.00e-167	582.00
IUUC-Mla-058840	Melampsora laricipopulina	33.95	2.00e-21	97.40
IUUC-Mvi-060424	Microbotryum violaceum	33.12	7.00e-19	88.60
IUUC-Mmr-061295	Microcebus murinus	32.61	4.00e-39	157.00
IUUC-Mdo-062295	Monodelphis domestica	30.39	6.00e-28	120.00
IUUC-Mac-064855	Musa acuminata	54.14	3.00e-161	561.00
IUUC-Mpu-065875	Mustela putorius furo	30.98	3.00e-36	147.00
IUUC-Mlu-066941	Myotis lucifugus	31.44	3.00e-36	147.00
IUUC-Nfi-068518	Neosartorya fischeri	27.39	6.00e-29	121.00
IUUC-Nle-069717	Nomascus leucogenys	30.19	3.00e-37	150.00
IUUC-Opr-070280	Ochotona princeps	31.32	2.00e-30	128.00
IUUC-Ont-071462	Oreochromis niloticus	30.13	2.00e-31	131.00
IUUC-Oan-073300	Ornithorhynchus anatinus	31.23	1.00e-27	119.00
IUUC-Ocu-074124	Oryctolagus cuniculus	31.25	3.00e-36	147.00
IUUC-Oba-075756	Oryza barthii	47.40	1.00e-115	410.00
IUUC-Obr-076580	Oryza brachyantha	48.98	4.00e-130	458.00
IUUC-Ogl-077759	Oryza glaberrima	50.47	2.00e-134	472.00
IUUC-Ogu-078657	Oryza glumaepatula	47.02	1.00e-114	407.00
IUUC-Oin-079481	Oryza indica	47.64	7.00e-122	431.00
IUUC-Olo-081062	Oryza longistaminata	50.70	2.00e-126	446.00
IUUC-Ome-081813	Oryza meridionalis	46.93	2.00e-114	406.00
IUUC-Oni-083007	Oryza nivara	47.10	5.00e-115	408.00
IUUC-Opu-083385	Oryza punctata	46.86	2.00e-113	402.00
IUUC-Oru-084861	Oryza rufipogon	47.25	9.00e-115	407.00
IUUC-Osa-085896	Oryza sativa	58.01	2.00e-130	458.00
IUUC-Ola-086418	Oryzias latipes	32.32	4.00e-13	67.40
IUUC-Olu-087631	Ostreococcus lucimarinus	53.25	2.00e-18	82.80
IUUC-Oga-088262	Otolemur garnettii	30.89	6.00e-37	149.00
IUUC-Oar-089658	Ovis aries	30.98	2.00e-36	148.00
IUUC-Ptr-091311	Pan troglodytes	32.43	6.00e-38	153.00
IUUC-Pan-091925	Papio anubis	31.00	6.00e-36	146.00
IUUC-Psi-093605	Pelodiscus sinensis	28.84	2.00e-26	115.00
IUUC-Pma-094163	Petromyzon marinus	36.97	7.00e-21	93.20
IUUC-Pno-094790	Phaeosphaeria nodorum	30.12	9.00e-16	77.80
IUUC-Ppa-095943	Physcomitrella patens	41.40	1.00e-88	320.00
IUUC-Pfo-096581	Poecilia formosa	30.27	3.00e-30	126.00
IUUC-Pab-098229	Pongo abelii	30.27	4.00e-37	150.00
IUUC-Pop-099598	Populus trichocarpa	61.13	0.00e+00	642.00
IUUC-Ppe-101658	Prunus persica	52.57	2.00e-163	569.00
IUUC-Pva-102343	Pteropus vampyrus	30.16	7.00e-36	146.00
IUUC-Pgr-103275	Puccinia graminis	31.78	2.00e-14	73.90
IUUC-Ptt-104004	Puccinia triticina	31.43	2.00e-06	46.60
IUUC-Pte-104161	Pyrenophora teres	34.15	8.00e-18	84.70
IUUC-Pyt-104576	Pyrenophora triticirepentis	34.15	5.00e-18	85.10
IUUC-Sce-106138	Saccharomyces cerevisiae	30.18	1.00e-19	90.50
IUUC-Sha-107497	Sarcophilus harrisii	31.71	4.00e-37	150.00
IUUC-Sja-107991	Schizosaccharomyces japonicus	29.18	6.00e-39	154.00
IUUC-Spo-108257	Schizosaccharomyces pombe	31.03	4.00e-40	158.00
IUUC-Ssl-108581	Sclerotinia sclerotiorum	26.60	2.00e-31	130.00
IUUC-Smo-108954	Selaginella moellendorffii	53.79	2.00e-98	351.00
IUUC-Sit-109920	Setaria italica	46.70	1.00e-124	440.00
IUUC-Sly-111616	Solanum lycopersicum	53.63	1.00e-168	586.00
IUUC-Stu-112648	Solanum tuberosum	44.27	7.00e-67	247.00
IUUC-Sar-113120	Sorex araneus	37.13	3.00e-23	104.00
IUUC-Sbi-113881	Sorghum bicolor	50.48	6.00e-130	457.00
IUUC-Sre-115127	Sporisorium reilianum	31.88	8.00e-39	154.00
IUUC-Ssc-116147	Sus scrofa	31.52	3.00e-36	147.00
IUUC-Tru-118525	Takifugu rubripes	29.51	1.00e-32	133.00
IUUC-Tsy-119160	Tarsius syrichta	30.98	5.00e-37	150.00
IUUC-Tni-119816	Tetraodon nigroviridis	31.36	4.00e-19	87.40
IUUC-Tca-121727	Theobroma cacao	62.52	0.00e+00	648.00
IUUC-Tre-122181	Trichoderma reesei	25.13	1.00e-26	114.00
IUUC-Tvi-122316	Trichoderma virens	25.40	3.00e-27	115.00
IUUC-Tae-125622	Triticum aestivum	47.64	6.00e-120	424.00
IUUC-Tur-126827	Triticum urartu	43.02	8.00e-106	377.00
IUUC-Tme-126984	Tuber melanosporum	27.23	3.00e-33	135.00
IUUC-Uma-129457	Ustilago maydis	29.72	6.00e-39	154.00
IUUC-Vda-129986	Verticillium dahliae	30.77	6.00e-16	78.60
IUUC-Vvi-131146	Vitis vinifera	58.15	1.00e-164	573.00
IUUC-Xma-133011	Xiphophorus maculatus	29.65	2.00e-29	123.00
IUUC-Yli-134516	Yarrowia lipolytica	35.33	4.00e-21	95.10
IUUC-Zma-134699	Zea mays	49.61	7.00e-128	451.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence