iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ssc-116147

Ensembl Protein ID

ENSSSCP00000008359.2

UniProt Accession

F1RFD8; F1RFD8_PIG

Genbank Protein ID

ENSSSCP00000008359

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

FP089532

Gene Name

RBBP6

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000007830.2	ENSSSCT00000008580.2	ENSSSCP00000008359.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.30e-09	38.3	253	326
ULD/UDP/UFD/DWNN	1.60e-42	143.8	4	76

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 2    vpeeflCpIslelMrdPvvlp.sGitydrssIekwl.asggktcPvtrqpl.teedlvPnltlrrliqawceen 72
           +p+e+lC I +++M+d vv+p +G +y  ++I+  l +s+ +tcP+++q   +++ l+ n++lr+ ++++ +e 
   Q: 253  IPDELLCLICKDIMTDAVVIPcCGNSYCDECIRTALlESDDHTCPTCHQNDvSPDALIANKFLRQAVNNFKNET 326
           8********************************9985666679****9975599999*********99998765 PP

ULD/UDP/UFD/DWNN

   S: 1    vhykfksklnydtitfDGlhisvfDLkreiiqrekLgkaaDfdLqitnaqtkeeykDDafliPkntsvivkriP 74
           vhykf+sklnydt+tfDGlhis++DLk++i++rekL kaaD+dLqitnaqtkeey+DD++liPkn+sviv+riP
   Q: 4    VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKL-KAADCDLQITNAQTKEEYTDDNALIPKNSSVIVRRIP 76
           8***********************************.************************************9 PP

Organism

Sus scrofa

Protein Sequence
(Fasta)

MSCVHYKFSS KLNYDTVTFD GLHISLCDLK KQIMGREKLK AADCDLQITN AQTKEEYTDD 60
NALIPKNSSV IVRRIPIGGV KSTSKTYVIS RTEPVMGTSK AIDDSSASIS LAQLTKTANL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCCTGTG TGCATTATAA GTTTTCCTCT AAACTCAACT ATGATACCGT CACCTTTGAT 60
GGGCTCCATA TCTCCCTCTG CGACTTAAAG AAGCAGATTA TGGGGAGAGA GAAGCTGAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR014891--DWNN_domain
IPR033489--RBBP6
IPR003613--Ubox_domain
IPR025829--Zn_knuckle_CX2CX3GHX4C
IPR001878--Znf_CCHC
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51282--DWNN
PS51698--U_BOX
PS50158--ZF_CCHC
PS50089--ZF_RING_2

Pfam

PF08783--DWNN
PF04564--U-box
PF13696--zf-CCHC_2

SMART

SM01180--DWNN
SM00184--RING
SM00343--ZnF_C2HC

Gene Ontology

GO:0005634--C:nucleus
GO:0003723--F:RNA binding
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0006974--P:cellular response to DNA damage stimulus
GO:0048568--P:embryonic organ development
GO:0001701--P:in utero embryonic development
GO:0006397--P:mRNA processing
GO:0035264--P:multicellular organism growth
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0006275--P:regulation of DNA replication
GO:0061053--P:somite development

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000195	Aegilops tauschii	35.71	4.00e-16	80.10
IUUC-Aml-001655	Ailuropoda melanoleuca	89.03	0.00e+00	1185.00
IUUC-Atr-002768	Amborella trichopoda	38.69	9.00e-18	85.10
IUUC-Apl-004100	Anas platyrhynchos	67.43	0.00e+00	877.00
IUUC-Aca-004345	Anolis carolinensis	66.75	4.00e-115	409.00
IUUC-Aly-006036	Arabidopsis lyrata	30.43	2.00e-34	140.00
IUUC-Ath-007648	Arabidopsis thaliana	32.16	2.00e-40	160.00
IUUC-Ago-007949	Ashbya gossypii	28.85	1.00e-34	140.00
IUUC-Acl-008118	Aspergillus clavatus	31.59	4.00e-27	115.00
IUUC-Afl-008408	Aspergillus flavus	32.08	5.00e-16	79.00
IUUC-Afu-008777	Aspergillus fumigatus	31.88	2.00e-35	143.00
IUUC-Ani-009426	Aspergillus nidulans	30.79	2.00e-36	146.00
IUUC-Ang-009735	Aspergillus niger	30.92	3.00e-33	136.00
IUUC-Aor-010213	Aspergillus oryzae	32.18	4.00e-35	142.00
IUUC-Ate-010474	Aspergillus terreus	30.29	3.00e-33	136.00
IUUC-Ame-010679	Astyanax mexicanus	69.86	4.00e-167	582.00
IUUC-Bgr-012229	Blumeria graminis	32.04	5.00e-37	149.00
IUUC-Bta-012672	Bos taurus	91.73	0.00e+00	1365.00
IUUC-Bci-013880	Botrytis cinerea	31.12	3.00e-35	142.00
IUUC-Bdi-014250	Brachypodium distachyon	28.53	1.00e-35	145.00
IUUC-Bol-015602	Brassica oleracea	31.12	3.00e-39	156.00
IUUC-Bra-016670	Brassica rapa	31.17	2.00e-38	154.00
IUUC-Cel-018532	Caenorhabditis elegans	36.73	2.00e-53	204.00
IUUC-Cja-018843	Callithrix jacchus	89.01	0.00e+00	1353.00
IUUC-Cfa-021107	Canis familiaris	90.34	0.00e+00	1296.00
IUUC-Cre-022712	Chlamydomonas reinhardtii	27.20	2.00e-12	66.60
IUUC-Csa-023397	Chlorocebus sabaeus	88.68	0.00e+00	1360.00
IUUC-Cho-024327	Choloepus hoffmanni	93.98	0.00e+00	910.00
IUUC-Cin-025439	Ciona intestinalis	48.46	1.00e-49	188.00
IUUC-Csv-026162	Ciona savignyi	55.45	9.00e-56	209.00
IUUC-Cgl-026629	Colletotrichum gloeosporioides	30.40	6.00e-29	122.00
IUUC-Cne-026921	Cryptococcus neoformans	28.72	2.00e-39	157.00
IUUC-Cme-027244	Cyanidioschyzon merolae	45.05	3.00e-18	87.40
IUUC-Dre-028023	Danio rerio	82.69	4.00e-162	566.00
IUUC-Dno-029430	Dasypus novemcinctus	87.49	0.00e+00	1289.00
IUUC-Dor-030406	Dipodomys ordii	84.87	0.00e+00	1229.00
IUUC-Dse-031312	Dothistroma septosporum	31.52	1.00e-38	154.00
IUUC-Dme-032133	Drosophila melanogaster	43.07	3.00e-74	273.00
IUUC-Ete-032466	Echinops telfairi	83.68	0.00e+00	1179.00
IUUC-Eca-034174	Equus caballus	89.87	0.00e+00	1077.00
IUUC-Eeu-034677	Erinaceus europaeus	92.12	0.00e+00	811.00
IUUC-Fca-035439	Felis catus	90.16	0.00e+00	1263.00
IUUC-Fal-037230	Ficedula albicollis	75.11	0.00e+00	761.00
IUUC-Fox-037976	Fusarium oxysporum	30.50	2.00e-35	143.00
IUUC-Fso-038202	Fusarium solani	27.78	9.00e-35	141.00
IUUC-Gmo-038618	Gadus morhua	69.65	6.00e-77	280.00
IUUC-Ggr-040035	Gaeumannomyces graminis	27.96	3.00e-31	129.00
IUUC-Gga-040908	Gallus gallus	67.80	0.00e+00	763.00
IUUC-Gac-041718	Gasterosteus aculeatus	70.59	1.00e-86	312.00
IUUC-Gma-044229	Glycine max	31.98	6.00e-40	159.00
IUUC-Ggo-044567	Gorilla gorilla	89.01	0.00e+00	1317.00
IUUC-Hsa-046849	Homo sapiens	89.12	0.00e+00	1320.00
IUUC-Hvu-047050	Hordeum vulgare	26.05	7.00e-23	102.00
IUUC-Itr-048832	Ictidomys tridecemlineatus	88.49	0.00e+00	1223.00
IUUC-Kpa-049323	Komagataella pastoris	31.01	3.00e-36	145.00
IUUC-Lch-050524	Latimeria chalumnae	69.32	0.00e+00	744.00
IUUC-Lpe-050947	Leersia perrieri	29.03	1.00e-29	124.00
IUUC-Loc-052709	Lepisosteus oculatus	82.76	2.00e-168	587.00
IUUC-Lma-053186	Leptosphaeria maculans	32.53	1.00e-33	137.00
IUUC-Laf-054472	Loxodonta africana	87.93	0.00e+00	1283.00
IUUC-Mcc-055743	Macaca mulatta	88.79	0.00e+00	1361.00
IUUC-Meu-056399	Macropus eugenii	78.91	0.00e+00	773.00
IUUC-Mor-057073	Magnaporthe oryzae	29.55	5.00e-32	132.00
IUUC-Mpo-057378	Magnaporthe poae	27.66	2.00e-31	130.00
IUUC-Mtr-058761	Medicago truncatula	31.37	6.00e-33	135.00
IUUC-Mla-058840	Melampsora laricipopulina	36.73	1.00e-24	108.00
IUUC-Mga-060129	Meleagris gallopavo	67.07	0.00e+00	847.00
IUUC-Mvi-060424	Microbotryum violaceum	33.55	7.00e-25	108.00
IUUC-Mmr-061295	Microcebus murinus	89.09	0.00e+00	1312.00
IUUC-Mdo-062295	Monodelphis domestica	77.40	0.00e+00	1083.00
IUUC-Mmu-064009	Mus musculus	80.63	0.00e+00	1159.00
IUUC-Mac-065479	Musa acuminata	35.63	3.00e-24	107.00
IUUC-Mpu-065875	Mustela putorius furo	89.78	0.00e+00	1282.00
IUUC-Mlu-066941	Myotis lucifugus	87.73	0.00e+00	1216.00
IUUC-Nfi-068518	Neosartorya fischeri	32.46	1.00e-36	147.00
IUUC-Ncr-068886	Neurospora crassa	28.77	8.00e-32	131.00
IUUC-Nle-069717	Nomascus leucogenys	94.69	0.00e+00	964.00
IUUC-Opr-070280	Ochotona princeps	96.57	0.00e+00	718.00
IUUC-Ont-071462	Oreochromis niloticus	66.76	3.00e-142	499.00
IUUC-Oan-073300	Ornithorhynchus anatinus	72.82	0.00e+00	976.00
IUUC-Ocu-074124	Oryctolagus cuniculus	87.39	0.00e+00	1349.00
IUUC-Oba-075756	Oryza barthii	31.08	5.00e-30	126.00
IUUC-Obr-076809	Oryza brachyantha	27.62	1.00e-19	91.30
IUUC-Ogl-077759	Oryza glaberrima	32.43	7.00e-36	145.00
IUUC-Ogu-078657	Oryza glumaepatula	30.21	9.00e-30	125.00
IUUC-Oin-079481	Oryza indica	32.76	5.00e-31	129.00
IUUC-Olo-081062	Oryza longistaminata	36.31	9.00e-23	101.00
IUUC-Ome-081813	Oryza meridionalis	31.08	2.00e-29	124.00
IUUC-Oni-083007	Oryza nivara	31.08	2.00e-29	124.00
IUUC-Opu-083385	Oryza punctata	30.03	5.00e-29	122.00
IUUC-Oru-084861	Oryza rufipogon	31.08	2.00e-29	124.00
IUUC-Osa-085896	Oryza sativa	32.26	7.00e-36	144.00
IUUC-Ola-086693	Oryzias latipes	63.37	9.00e-129	454.00
IUUC-Olu-087631	Ostreococcus lucimarinus	48.65	8.00e-16	74.30
IUUC-Oga-088262	Otolemur garnettii	89.11	0.00e+00	1297.00
IUUC-Oar-089658	Ovis aries	90.47	0.00e+00	1431.00
IUUC-Ptr-091311	Pan troglodytes	88.68	0.00e+00	1315.00
IUUC-Pan-091925	Papio anubis	88.90	0.00e+00	1364.00
IUUC-Psi-093605	Pelodiscus sinensis	68.80	0.00e+00	840.00
IUUC-Pma-094163	Petromyzon marinus	73.57	1.00e-99	355.00
IUUC-Pno-094790	Phaeosphaeria nodorum	27.96	1.00e-23	104.00
IUUC-Ppa-095943	Physcomitrella patens	30.68	6.00e-45	176.00
IUUC-Pfo-096581	Poecilia formosa	70.41	4.00e-136	479.00
IUUC-Pab-098229	Pongo abelii	88.47	0.00e+00	1318.00
IUUC-Pop-099160	Populus trichocarpa	30.48	5.00e-39	155.00
IUUC-Pca-100875	Procavia capensis	83.76	0.00e+00	854.00
IUUC-Ppe-101658	Prunus persica	36.47	3.00e-17	84.00
IUUC-Pva-102343	Pteropus vampyrus	90.71	0.00e+00	920.00
IUUC-Pgr-103275	Puccinia graminis	36.24	5.00e-18	86.70
IUUC-Ptt-104004	Puccinia triticina	40.00	2.00e-10	60.10
IUUC-Pte-104161	Pyrenophora teres	30.94	1.00e-29	124.00
IUUC-Pyt-104576	Pyrenophora triticirepentis	31.68	2.00e-30	126.00
IUUC-Rno-105264	Rattus norvegicus	79.65	0.00e+00	1108.00
IUUC-Sce-106138	Saccharomyces cerevisiae	30.92	3.00e-38	152.00
IUUC-Sha-107497	Sarcophilus harrisii	77.15	0.00e+00	1099.00
IUUC-Sja-107991	Schizosaccharomyces japonicus	33.13	2.00e-44	172.00
IUUC-Spo-108257	Schizosaccharomyces pombe	32.23	2.00e-46	179.00
IUUC-Ssl-108581	Sclerotinia sclerotiorum	29.74	2.00e-37	150.00
IUUC-Smo-109358	Selaginella moellendorffii	29.76	3.00e-33	135.00
IUUC-Sit-109920	Setaria italica	32.61	1.00e-36	148.00
IUUC-Sly-111616	Solanum lycopersicum	38.10	1.00e-26	115.00
IUUC-Stu-112648	Solanum tuberosum	32.37	2.00e-11	63.20
IUUC-Sar-113120	Sorex araneus	82.05	0.00e+00	1147.00
IUUC-Sbi-113881	Sorghum bicolor	30.93	1.00e-37	151.00
IUUC-Sre-115127	Sporisorium reilianum	30.71	1.00e-46	181.00
IUUC-Tgu-117215	Taeniopygia guttata	74.92	0.00e+00	664.00
IUUC-Tru-118525	Takifugu rubripes	64.00	8.00e-134	469.00
IUUC-Tsy-119160	Tarsius syrichta	88.22	0.00e+00	1308.00
IUUC-Tni-119816	Tetraodon nigroviridis	68.37	4.00e-83	300.00
IUUC-Tca-121727	Theobroma cacao	37.50	1.00e-17	85.50
IUUC-Tre-122181	Trichoderma reesei	29.54	7.00e-36	145.00
IUUC-Tvi-122316	Trichoderma virens	28.27	2.00e-35	144.00
IUUC-Tae-125227	Triticum aestivum	29.89	3.00e-27	117.00
IUUC-Tur-126827	Triticum urartu	36.31	2.00e-16	80.50
IUUC-Tme-126984	Tuber melanosporum	31.52	9.00e-45	174.00
IUUC-Tbe-127263	Tupaia belangeri	87.60	0.00e+00	1005.00
IUUC-Ttr-128498	Tursiops truncatus	89.59	0.00e+00	1400.00
IUUC-Uma-129457	Ustilago maydis	30.13	2.00e-44	173.00
IUUC-Vda-129986	Verticillium dahliae	28.86	4.00e-35	142.00
IUUC-Vpa-130795	Vicugna pacos	88.75	0.00e+00	761.00
IUUC-Vvi-131146	Vitis vinifera	35.88	6.00e-17	82.80
IUUC-Xtr-132789	Xenopus tropicalis	68.02	0.00e+00	692.00
IUUC-Xma-133011	Xiphophorus maculatus	69.71	2.00e-134	472.00
IUUC-Yli-134516	Yarrowia lipolytica	33.24	5.00e-40	158.00
IUUC-Zma-134699	Zea mays	30.32	2.00e-36	147.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence