iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Ppa-095351

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Predicted protein

Genbank Nucleotide ID

DS544923

Gene Name

PHYPADRAFT_179087

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PP1S34_155V6	PP1S34_155V6.1	PP1S34_155V6.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.70e-42	141.7	127	165
UBD/Beta-Prp	1.60e-77	261.4	83	335

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHtds+ +laf +d  ll+sG+ Dg + +WD +tg+l +
   Q: 127  GHTDSIASLAFsHDgQLLASGGLDGIVNIWDSSTGTLKQ 165
           8***********888****************99998876 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlsl 100
           + hk+++++v++   d+ l+atg+ d+ + vw+v +    ++l gh++ ++++ fs+dg++l++g+ D+++++wd stg+  ++l+g  + +  +
   Q: 83   TGHKGPVYSVACsPTDTGLVATGGGDDVTYVWRVGDAESHKQLGGHTDSIASLAFSHDGQLLASGGLDGIVNIWDSSTGTLKQKLEGPGEAIEWV 177
           456777778888466888***************************************************************************** PP
   S: 101  sfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgg..htdsvyslsfdsngk 193
           +++p g++l++Gs+d t+ +w+ +t  c+  +lsgh+g+v+c  + pdg+ + +Gs D+  r+W+ k+g+  r  +g   ht+  ++l+++ +++
   Q: 178  KWHPRGHVLLAGSEDVTAWLWNADTAACMA-VLSGHSGAVTCGDFTPDGKTICTGSEDGSFRVWNPKSGESTRVVQGHpfHTEGLTCLAISNDST 271
           ******************************.********************************************7644499************* PP
   S: 194  elvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdll 257
             ++gs+d+   ++++qtg++  tl +h++ v sv fs+  +++++g++Dg + iWdl++ +  
   Q: 272  IALTGSTDNNACIVNIQTGRVHGTLAEHSKSVESVGFSSGLNLVATGAMDGKLIIWDLQTLQSR 335
           ***********************************************************98865 PP

Organism

Physcomitrella patens

Protein Sequence
(Fasta)

MTVPSSRLPQ DQADEDEGPM FVNNAEVLHE YEVDEEDLPE ADDDGDDDGD GGDDDHKGDP 60
DDFDMDLAGD GFPEHDDSVH TFTGHKGPVY SVACSPTDTG LVATGGGDDV TYVWRVGDAE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGGAGTCGC GATAGATCCC TAAATGCCCT GCCTCAATTG CTCTCCCCCT AAGCCAAATC 60
CATTGCTCCC GGCTCTGATT GTGTGCGAAA TTTCGTCCCG CAAGTGGGTA TTTTGGTTCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0030687--C:preribosome, large subunit precursor
GO:0051082--F:unfolded protein binding
GO:0042273--P:ribosomal large subunit biogenesis

KEGG

ppp:PHYPADRAFT_179087

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000794	Aegilops tauschii	49.69	2.00e-96	345.00
IUUC-Aml-001781	Ailuropoda melanoleuca	38.00	1.00e-66	246.00
IUUC-Atr-003169	Amborella trichopoda	55.49	8.00e-115	405.00
IUUC-Apl-003939	Anas platyrhynchos	29.31	9.00e-33	133.00
IUUC-Aca-004594	Anolis carolinensis	37.04	2.00e-64	239.00
IUUC-Aly-006277	Arabidopsis lyrata	51.62	5.00e-99	353.00
IUUC-Ath-007701	Arabidopsis thaliana	56.08	2.00e-111	394.00
IUUC-Ame-011651	Astyanax mexicanus	34.08	9.00e-56	210.00
IUUC-Bta-012833	Bos taurus	38.29	7.00e-67	246.00
IUUC-Bdi-014289	Brachypodium distachyon	51.18	2.00e-102	365.00
IUUC-Bol-015313	Brassica oleracea	51.87	3.00e-110	390.00
IUUC-Bra-017115	Brassica rapa	53.41	7.00e-99	353.00
IUUC-Cel-018305	Caenorhabditis elegans	25.93	3.00e-26	112.00
IUUC-Cja-019433	Callithrix jacchus	38.00	8.00e-66	243.00
IUUC-Cfa-020093	Canis familiaris	37.71	9.00e-67	246.00
IUUC-Cpo-021742	Cavia porcellus	38.00	8.00e-66	243.00
IUUC-Cre-022781	Chlamydomonas reinhardtii	48.41	2.00e-86	311.00
IUUC-Csa-023498	Chlorocebus sabaeus	38.00	5.00e-66	244.00
IUUC-Cho-024628	Choloepus hoffmanni	36.65	6.00e-46	177.00
IUUC-Cin-025244	Ciona intestinalis	35.34	2.00e-51	195.00
IUUC-Csv-026218	Ciona savignyi	34.75	4.00e-52	197.00
IUUC-Cne-026911	Cryptococcus neoformans	30.82	2.00e-36	146.00
IUUC-Dre-028528	Danio rerio	36.60	2.00e-61	228.00
IUUC-Dno-029297	Dasypus novemcinctus	37.43	2.00e-65	241.00
IUUC-Dme-031587	Drosophila melanogaster	27.91	2.00e-33	135.00
IUUC-Ete-033100	Echinops telfairi	38.46	1.00e-37	149.00
IUUC-Eca-034277	Equus caballus	37.43	8.00e-66	243.00
IUUC-Eeu-035052	Erinaceus europaeus	37.50	3.00e-34	138.00
IUUC-Fca-036115	Felis catus	38.29	2.00e-67	248.00
IUUC-Fal-036864	Ficedula albicollis	38.94	8.00e-71	259.00
IUUC-Gmo-039090	Gadus morhua	34.43	2.00e-41	162.00
IUUC-Gga-040545	Gallus gallus	39.22	2.00e-71	262.00
IUUC-Gac-042027	Gasterosteus aculeatus	39.77	8.00e-69	253.00
IUUC-Gma-044168	Glycine max	56.42	7.00e-111	392.00
IUUC-Ggo-045036	Gorilla gorilla	38.00	9.00e-66	243.00
IUUC-Hsa-046749	Homo sapiens	38.00	9.00e-66	243.00
IUUC-Hvu-047217	Hordeum vulgare	49.40	3.00e-99	354.00
IUUC-Itr-048114	Ictidomys tridecemlineatus	38.00	7.00e-66	243.00
IUUC-Kpa-049147	Komagataella pastoris	26.94	2.00e-29	122.00
IUUC-Lch-049747	Latimeria chalumnae	37.00	5.00e-58	217.00
IUUC-Lpe-051433	Leersia perrieri	49.41	1.00e-101	362.00
IUUC-Loc-052406	Lepisosteus oculatus	40.29	8.00e-70	256.00
IUUC-Laf-053901	Loxodonta africana	38.00	1.00e-65	243.00
IUUC-Mcc-054990	Macaca mulatta	38.00	1.00e-65	243.00
IUUC-Meu-056844	Macropus eugenii	38.86	1.00e-65	243.00
IUUC-Mtr-057759	Medicago truncatula	55.39	4.00e-103	367.00
IUUC-Mla-058856	Melampsora laricipopulina	31.53	5.00e-49	187.00
IUUC-Mga-059749	Meleagris gallopavo	38.48	4.00e-70	257.00
IUUC-Mvi-060237	Microbotryum violaceum	34.60	5.00e-59	221.00
IUUC-Mmr-061270	Microcebus murinus	36.24	1.00e-62	232.00
IUUC-Mdo-062965	Monodelphis domestica	37.71	4.00e-66	244.00
IUUC-Mmu-064081	Mus musculus	38.00	2.00e-66	245.00
IUUC-Mac-065236	Musa acuminata	55.90	8.00e-113	399.00
IUUC-Mpu-066355	Mustela putorius furo	38.00	9.00e-67	246.00
IUUC-Mlu-067630	Myotis lucifugus	37.61	5.00e-65	241.00
IUUC-Nle-069701	Nomascus leucogenys	38.00	8.00e-66	243.00
IUUC-Opr-070337	Ochotona princeps	34.57	1.00e-57	216.00
IUUC-Ont-072614	Oreochromis niloticus	40.06	1.00e-68	253.00
IUUC-Ocu-073912	Oryctolagus cuniculus	38.00	3.00e-66	245.00
IUUC-Oba-075195	Oryza barthii	52.63	3.00e-105	374.00
IUUC-Obr-076059	Oryza brachyantha	51.64	6.00e-106	376.00
IUUC-Ogl-077318	Oryza glaberrima	51.64	3.00e-107	380.00
IUUC-Ogu-078579	Oryza glumaepatula	52.78	4.00e-106	377.00
IUUC-Oin-079340	Oryza indica	51.64	3.00e-107	380.00
IUUC-Olo-080813	Oryza longistaminata	52.47	4.00e-105	374.00
IUUC-Ome-081420	Oryza meridionalis	53.25	6.00e-106	376.00
IUUC-Oni-082650	Oryza nivara	52.63	3.00e-105	374.00
IUUC-Opu-083832	Oryza punctata	52.63	7.00e-104	369.00
IUUC-Oru-084207	Oryza rufipogon	52.63	3.00e-105	374.00
IUUC-Osa-085708	Oryza sativa	51.64	3.00e-107	380.00
IUUC-Ola-087164	Oryzias latipes	40.35	1.00e-68	253.00
IUUC-Olu-087824	Ostreococcus lucimarinus	47.81	4.00e-76	277.00
IUUC-Oga-088864	Otolemur garnettii	38.00	6.00e-66	243.00
IUUC-Oar-090115	Ovis aries	38.29	2.00e-66	245.00
IUUC-Ptr-091398	Pan troglodytes	38.00	8.00e-66	243.00
IUUC-Pan-092002	Papio anubis	38.00	7.00e-66	243.00
IUUC-Pma-094618	Petromyzon marinus	35.50	2.00e-63	235.00
IUUC-Pfo-097078	Poecilia formosa	40.35	2.00e-67	248.00
IUUC-Pab-098540	Pongo abelii	38.00	8.00e-66	243.00
IUUC-Pop-099140	Populus trichocarpa	59.10	1.00e-117	415.00
IUUC-Pca-101072	Procavia capensis	37.09	1.00e-61	229.00
IUUC-Ppe-101979	Prunus persica	56.72	3.00e-112	397.00
IUUC-Pva-102400	Pteropus vampyrus	33.15	2.00e-52	199.00
IUUC-Pgr-103362	Puccinia graminis	31.94	7.00e-51	193.00
IUUC-Ptt-103756	Puccinia triticina	32.37	1.00e-35	143.00
IUUC-Rno-105672	Rattus norvegicus	37.71	7.00e-66	243.00
IUUC-Sja-107693	Schizosaccharomyces japonicus	33.53	3.00e-55	208.00
IUUC-Spo-108208	Schizosaccharomyces pombe	32.95	1.00e-55	209.00
IUUC-Smo-109168	Selaginella moellendorffii	54.02	2.00e-123	434.00
IUUC-Sit-109978	Setaria italica	51.64	2.00e-107	381.00
IUUC-Sly-111316	Solanum lycopersicum	59.05	1.00e-117	415.00
IUUC-Stu-111956	Solanum tuberosum	59.64	2.00e-118	418.00
IUUC-Sbi-114189	Sorghum bicolor	52.84	3.00e-105	374.00
IUUC-Sre-115029	Sporisorium reilianum	38.35	6.00e-59	220.00
IUUC-Ssc-116045	Sus scrofa	33.62	3.00e-45	174.00
IUUC-Tgu-117514	Taeniopygia guttata	38.66	2.00e-70	258.00
IUUC-Tru-117851	Takifugu rubripes	37.75	1.00e-66	246.00
IUUC-Tsy-119140	Tarsius syrichta	34.29	4.00e-54	204.00
IUUC-Tni-120248	Tetraodon nigroviridis	39.12	1.00e-66	246.00
IUUC-Tca-121686	Theobroma cacao	55.49	5.00e-109	386.00
IUUC-Tae-125689	Triticum aestivum	49.40	5.00e-100	357.00
IUUC-Tur-126174	Triticum urartu	49.54	8.00e-97	346.00
IUUC-Tme-127079	Tuber melanosporum	30.73	3.00e-17	82.40
IUUC-Tbe-127476	Tupaia belangeri	38.00	2.00e-34	139.00
IUUC-Ttr-128182	Tursiops truncatus	38.29	7.00e-66	243.00
IUUC-Uma-129624	Ustilago maydis	38.05	1.00e-60	226.00
IUUC-Vpa-130605	Vicugna pacos	35.35	1.00e-49	189.00
IUUC-Vvi-131319	Vitis vinifera	54.14	9.00e-123	432.00
IUUC-Xtr-132193	Xenopus tropicalis	38.55	9.00e-73	266.00
IUUC-Xma-133880	Xiphophorus maculatus	40.35	3.00e-68	251.00
IUUC-Yli-134520	Yarrowia lipolytica	26.05	3.00e-29	122.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence