iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000014399.6	ENSRNOT00000019497.6	ENSRNOP00000019497.5
ENSRNOG00000014399.6	ENSRNOT00000083582.1	ENSRNOP00000070023.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
miRNAMap	RAID2
Protein-protein Interaction
IID
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.30e-34	114.7	358	394
UBD/Beta-Prp	9.10e-50	169.9	90	300

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgvll 36
           H++++  l +   +  + ++s Dg++++WD rtg+ll
   Q: 358  HQSGIVQLLWeaGTAVVYTCSLDGVVRLWDARTGRLL 394
           999999*99*853256899***************975 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghe 94
            h  sv  cv    + ++l +tg++d++  vw++++g ll +  gh++ vt+  fs+d+ + +tg   +++kvw ++t + v +++   
   Q: 90   LHSASVF-CVSLdPKTNTLAVTGGEDDKAFVWRLSDGELLFECAGHKDSVTCAGFSHDSTLVATGDMSGLLKVWQVETKEEVWSFE--A 175
           4444455.577735556666899************************************999***99*******************..8 PP
   S: 95   dsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtl..tgghtd 181
            ++  ++++p   +l++G++d    +w++++g c   t++g +   +c +v pdg+  v G  D+t+r+Wdlk+g+ ++ l  t+gh++
   Q: 176  GDLEWMEWHPRAPVLLAGTADGNTWMWKVPNGDCK--TFQGPNCPATCGRVLPDGKRAVVGYEDGTIRIWDLKQGNPIHVLkgTEGHQG 262
           9999******9***********************9..7*******************************************99677*** PP
   S: 182  svyslsfdsngkelvsgsldgtvklwdlqtgecvrtln 219
           + ++++ +++g  +++gs d + kl++  tg++v  ++
   Q: 263  PLTCVATNQDGSLILTGSVDCQAKLVSATTGKVVGVFR 300
           ********************************998765 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MESESESGAA ADTPPLETLS FHGDEEIIEV VELDPGPPDP DDLAQEMEDV DFEEEEEEEE 60
GNDEGWVLEP QEGVVGSMEG PDDSEVTFAL HSASVFCVSL DPKTNTLAVT GGEDDKAFVW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGAAGGACTG CAGAGGAACT CACCGGAGAC ATACGAATGA AGGAAATTCG GGGAACTGTT 60
TTAAAACTGC AGGACCTTAG CTATCCTAAA GGATAACTAA CTCCATCCCG TTGAAGAGGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0045171--C:intercellular bridge
GO:0015630--C:microtubule cytoskeleton
GO:0030687--C:preribosome, large subunit precursor
GO:0051082--F:unfolded protein binding
GO:0042273--P:ribosomal large subunit biogenesis

KEGG

rno:301512

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000794	Aegilops tauschii	34.62	5.00e-57	215.00
IUUC-Aml-001781	Ailuropoda melanoleuca	97.02	0.00e+00	752.00
IUUC-Atr-003169	Amborella trichopoda	35.82	4.00e-61	228.00
IUUC-Apl-003939	Anas platyrhynchos	67.55	1.00e-114	405.00
IUUC-Aca-004594	Anolis carolinensis	82.77	1.00e-174	605.00
IUUC-Aly-006277	Arabidopsis lyrata	31.25	4.00e-48	185.00
IUUC-Ath-007701	Arabidopsis thaliana	33.43	2.00e-56	212.00
IUUC-Ame-011651	Astyanax mexicanus	55.14	3.00e-134	471.00
IUUC-Bgr-012118	Blumeria graminis	22.82	2.00e-17	83.60
IUUC-Bta-012833	Bos taurus	97.24	0.00e+00	754.00
IUUC-Bdi-014289	Brachypodium distachyon	35.21	3.00e-62	232.00
IUUC-Bol-015313	Brassica oleracea	32.29	5.00e-53	201.00
IUUC-Bra-017115	Brassica rapa	31.43	2.00e-43	169.00
IUUC-Cel-018305	Caenorhabditis elegans	31.82	4.00e-38	152.00
IUUC-Cja-019433	Callithrix jacchus	95.63	0.00e+00	753.00
IUUC-Cfa-020093	Canis familiaris	98.39	0.00e+00	767.00
IUUC-Cpo-021742	Cavia porcellus	98.62	0.00e+00	763.00
IUUC-Cre-022781	Chlamydomonas reinhardtii	33.24	1.00e-42	167.00
IUUC-Csa-023498	Chlorocebus sabaeus	95.86	0.00e+00	752.00
IUUC-Cho-024628	Choloepus hoffmanni	97.77	6.00e-179	619.00
IUUC-Cin-025244	Ciona intestinalis	47.01	9.00e-86	310.00
IUUC-Csv-026218	Ciona savignyi	46.44	3.00e-88	318.00
IUUC-Cne-026911	Cryptococcus neoformans	27.23	1.00e-26	114.00
IUUC-Dre-028528	Danio rerio	65.82	4.00e-140	491.00
IUUC-Dno-029297	Dasypus novemcinctus	94.74	0.00e+00	759.00
IUUC-Dor-030543	Dipodomys ordii	97.16	7.00e-66	243.00
IUUC-Dme-031587	Drosophila melanogaster	31.02	8.00e-45	174.00
IUUC-Ete-033100	Echinops telfairi	96.60	9.00e-125	439.00
IUUC-Eca-034277	Equus caballus	98.12	0.00e+00	739.00
IUUC-Eeu-035052	Erinaceus europaeus	99.03	8.00e-107	380.00
IUUC-Fca-036115	Felis catus	98.39	0.00e+00	765.00
IUUC-Fal-036864	Ficedula albicollis	82.09	2.00e-177	615.00
IUUC-Gmo-039090	Gadus morhua	60.58	8.00e-99	353.00
IUUC-Gga-040545	Gallus gallus	76.98	4.00e-180	624.00
IUUC-Gac-042027	Gasterosteus aculeatus	63.40	2.00e-142	498.00
IUUC-Gma-044168	Glycine max	35.92	6.00e-58	218.00
IUUC-Ggo-045036	Gorilla gorilla	95.86	0.00e+00	752.00
IUUC-Hsa-046749	Homo sapiens	95.86	0.00e+00	752.00
IUUC-Hvu-047217	Hordeum vulgare	34.67	8.00e-59	220.00
IUUC-Itr-048114	Ictidomys tridecemlineatus	98.85	0.00e+00	762.00
IUUC-Kpa-049147	Komagataella pastoris	25.20	2.00e-24	107.00
IUUC-Lch-049747	Latimeria chalumnae	62.80	5.00e-140	490.00
IUUC-Lpe-051433	Leersia perrieri	32.42	3.00e-53	202.00
IUUC-Loc-052406	Lepisosteus oculatus	69.14	3.00e-161	561.00
IUUC-Lma-053153	Leptosphaeria maculans	27.75	3.00e-15	76.30
IUUC-Laf-053901	Loxodonta africana	98.85	0.00e+00	763.00
IUUC-Mcc-054990	Macaca mulatta	98.91	0.00e+00	707.00
IUUC-Meu-056844	Macropus eugenii	87.62	0.00e+00	659.00
IUUC-Mtr-057759	Medicago truncatula	37.18	3.00e-59	222.00
IUUC-Mla-058856	Melampsora laricipopulina	28.89	2.00e-36	146.00
IUUC-Mga-059749	Meleagris gallopavo	81.20	3.00e-177	613.00
IUUC-Mvi-060237	Microbotryum violaceum	31.15	7.00e-45	174.00
IUUC-Mmr-061270	Microcebus murinus	94.47	0.00e+00	748.00
IUUC-Mdo-062965	Monodelphis domestica	86.67	0.00e+00	664.00
IUUC-Mmu-064081	Mus musculus	98.62	0.00e+00	766.00
IUUC-Mac-065236	Musa acuminata	33.43	3.00e-56	212.00
IUUC-Mpu-066355	Mustela putorius furo	98.85	0.00e+00	768.00
IUUC-Mlu-067630	Myotis lucifugus	97.94	0.00e+00	755.00
IUUC-Nle-069701	Nomascus leucogenys	97.47	0.00e+00	758.00
IUUC-Opr-070337	Ochotona princeps	92.64	0.00e+00	697.00
IUUC-Ont-072614	Oreochromis niloticus	70.57	2.00e-149	522.00
IUUC-Ocu-073912	Oryctolagus cuniculus	97.71	0.00e+00	748.00
IUUC-Oba-075195	Oryza barthii	32.44	5.00e-54	204.00
IUUC-Obr-076059	Oryza brachyantha	31.61	3.00e-55	208.00
IUUC-Ogl-077318	Oryza glaberrima	32.18	4.00e-56	212.00
IUUC-Ogu-078579	Oryza glumaepatula	32.05	4.00e-54	205.00
IUUC-Oin-079340	Oryza indica	32.18	4.00e-56	212.00
IUUC-Olo-080813	Oryza longistaminata	32.64	2.00e-54	206.00
IUUC-Ome-081420	Oryza meridionalis	32.74	3.00e-54	205.00
IUUC-Oni-082650	Oryza nivara	32.44	5.00e-54	204.00
IUUC-Opu-083832	Oryza punctata	33.04	7.00e-56	211.00
IUUC-Oru-084207	Oryza rufipogon	32.44	5.00e-54	204.00
IUUC-Osa-085708	Oryza sativa	32.18	4.00e-56	212.00
IUUC-Ola-087164	Oryzias latipes	71.43	8.00e-150	523.00
IUUC-Olu-087824	Ostreococcus lucimarinus	37.33	7.00e-51	194.00
IUUC-Oga-088864	Otolemur garnettii	98.17	0.00e+00	754.00
IUUC-Oar-090115	Ovis aries	96.32	0.00e+00	756.00
IUUC-Ptr-091398	Pan troglodytes	97.24	0.00e+00	756.00
IUUC-Pan-092002	Papio anubis	96.09	0.00e+00	753.00
IUUC-Psi-093979	Pelodiscus sinensis	85.71	1.00e-87	315.00
IUUC-Pma-094618	Petromyzon marinus	61.11	2.00e-128	452.00
IUUC-Ppa-095351	Physcomitrella patens	37.71	9.00e-67	247.00
IUUC-Pfo-097078	Poecilia formosa	73.43	8.00e-152	530.00
IUUC-Pab-098540	Pongo abelii	97.47	0.00e+00	758.00
IUUC-Pop-099140	Populus trichocarpa	35.53	2.00e-58	219.00
IUUC-Pca-101072	Procavia capensis	89.89	0.00e+00	705.00
IUUC-Ppe-101979	Prunus persica	36.34	4.00e-59	221.00
IUUC-Pva-102400	Pteropus vampyrus	91.03	0.00e+00	684.00
IUUC-Pgr-103362	Puccinia graminis	28.80	2.00e-43	169.00
IUUC-Ptt-103756	Puccinia triticina	31.09	1.00e-32	133.00
IUUC-Sja-107693	Schizosaccharomyces japonicus	28.81	1.00e-43	170.00
IUUC-Spo-108208	Schizosaccharomyces pombe	29.66	7.00e-47	181.00
IUUC-Smo-109168	Selaginella moellendorffii	34.99	1.00e-57	217.00
IUUC-Sit-109978	Setaria italica	32.76	8.00e-56	211.00
IUUC-Sly-111316	Solanum lycopersicum	36.00	4.00e-60	225.00
IUUC-Stu-111956	Solanum tuberosum	37.32	3.00e-62	232.00
IUUC-Sbi-114189	Sorghum bicolor	33.05	4.00e-54	205.00
IUUC-Sre-115029	Sporisorium reilianum	33.43	1.00e-41	164.00
IUUC-Ssc-116045	Sus scrofa	85.82	2.00e-168	585.00
IUUC-Tgu-117514	Taeniopygia guttata	81.54	4.00e-176	610.00
IUUC-Tru-117851	Takifugu rubripes	67.99	2.00e-143	501.00
IUUC-Tsy-119140	Tarsius syrichta	92.18	0.00e+00	698.00
IUUC-Tni-120248	Tetraodon nigroviridis	68.56	8.00e-144	503.00
IUUC-Tca-121686	Theobroma cacao	32.59	2.00e-55	209.00
IUUC-Tae-123208	Triticum aestivum	34.76	1.00e-58	219.00
IUUC-Tur-126174	Triticum urartu	35.21	4.00e-57	215.00
IUUC-Tme-127079	Tuber melanosporum	27.92	9.00e-14	71.60
IUUC-Tbe-127476	Tupaia belangeri	98.07	4.00e-107	381.00
IUUC-Ttr-128182	Tursiops truncatus	96.78	0.00e+00	764.00
IUUC-Uma-129624	Ustilago maydis	32.84	1.00e-44	174.00
IUUC-Vpa-130605	Vicugna pacos	89.34	3.00e-173	600.00
IUUC-Vvi-131319	Vitis vinifera	34.01	3.00e-57	215.00
IUUC-Xtr-132193	Xenopus tropicalis	72.77	8.00e-167	579.00
IUUC-Xma-133880	Xiphophorus maculatus	72.57	1.00e-151	529.00
IUUC-Yli-134520	Yarrowia lipolytica	29.06	5.00e-27	115.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence