iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Opu-083748

Ensembl Protein ID

OPUNC04G27240.1

UniProt Accession

A0A0E0KWU3; A0A0E0KWU3_ORYPU

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
OPUNC04G27240	OPUNC04G27240.1	OPUNC04G27240.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.50e-37	124.3	143	181
UBD/Beta-Prp	7.00e-58	197.1	15	278

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v++++f +d + +vsG+ D+++k+WDl+ g+ll+
   Q: 143  GHTRGVNAIRFtPDgRWVVSGGEDNVVKLWDLTAGKLLH 181
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvls 99
            +h+s ++c+k+  + +++l+tg++d+++ +w + +++ + slsgh+++v +v+f++++ + + g+  +tik+wdl+  k+v+tl+gh ++ +s
   Q: 15   VAHSSNVNCLKIgRKTSRVLVTGGEDHKVNLWAIGKPNSILSLSGHTSAVESVNFDSTEVFVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCMS 108
           579999999***999********************************************99999****************************** PP
   S: 100  lsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngk 193
           ++f+p g++++sGs d  +++wd++ + c++ t +gh++ vn +++ pdg+ +vsG+ D++v+lWdl  gkll++++  h++++++++f++  +
   Q: 109  VDFHPFGEFFASGSLDTNLKIWDIRRKGCIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNVVKLWDLTAGKLLHDFKC-HEGQIQCIDFHPHEF 200
           *******************************.********************************************98.*************** PP
   S: 194  elvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvav 272
            l++gs d+tvk+wdl+t e + +    t+ v+s+ f p++  l++g  ++s++++  +   +  t+    s+++   v
   Q: 201  LLATGSSDKTVKFWDLETFELIGSTGPETTGVRSMTFNPDGRSLLCG-LHESLKVFSWEPIRCHDTVDVGWSRLSDLNV 278
           **************************************999999999.5788888666666666666555555555544 PP

Organism

Oryza punctata

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MTTNTKRAYK LQEFVAHSSN VNCLKIGRKT SRVLVTGGED HKVNLWAIGK PNSILSLSGH 60
TSAVESVNFD STEVFVAAGA ASGTIKLWDL EEAKIVRTLT GHRSNCMSVD FHPFGEFFAS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGACGACCA ACACCAAGCG CGCGTACAAG CTCCGTATCC TCGCGAATTC GTTTCCAGTA 60
TTTTTGACAA GTATTTTTGT TTTTTTTTTC GAGGTACATT GTGTCTGTTT GACCGATCCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000954	Aegilops tauschii	59.78	0.00e+00	1041.00
IUUC-Aml-002187	Ailuropoda melanoleuca	50.61	3.00e-103	369.00
IUUC-Atr-002899	Amborella trichopoda	67.63	0.00e+00	634.00
IUUC-Apl-003305	Anas platyrhynchos	52.20	3.00e-102	365.00
IUUC-Aca-004635	Anolis carolinensis	51.99	2.00e-92	332.00
IUUC-Aly-005711	Arabidopsis lyrata	83.02	2.00e-172	598.00
IUUC-Ath-007323	Arabidopsis thaliana	50.28	0.00e+00	760.00
IUUC-Acl-008307	Aspergillus clavatus	32.43	4.00e-30	125.00
IUUC-Bta-012527	Bos taurus	54.52	4.00e-106	378.00
IUUC-Bdi-014652	Brachypodium distachyon	75.29	0.00e+00	1365.00
IUUC-Bol-016374	Brassica oleracea	49.39	0.00e+00	743.00
IUUC-Bra-017390	Brassica rapa	81.07	1.00e-170	593.00
IUUC-Cja-019706	Callithrix jacchus	54.52	1.00e-105	376.00
IUUC-Cfa-020139	Canis familiaris	46.48	1.00e-98	353.00
IUUC-Cpo-021710	Cavia porcellus	54.85	8.00e-107	380.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	44.98	2.00e-84	306.00
IUUC-Csa-023546	Chlorocebus sabaeus	54.33	4.00e-102	365.00
IUUC-Cin-025156	Ciona intestinalis	46.84	5.00e-89	321.00
IUUC-Csv-025962	Ciona savignyi	50.00	1.00e-89	322.00
IUUC-Dre-028215	Danio rerio	52.30	9.00e-104	370.00
IUUC-Dno-029314	Dasypus novemcinctus	51.83	6.00e-107	380.00
IUUC-Dor-030482	Dipodomys ordii	54.52	2.00e-106	379.00
IUUC-Dme-032188	Drosophila melanogaster	38.21	2.00e-57	216.00
IUUC-Eca-034143	Equus caballus	54.18	3.00e-103	368.00
IUUC-Fca-035924	Felis catus	51.52	2.00e-106	379.00
IUUC-Fal-037387	Ficedula albicollis	53.14	1.00e-105	376.00
IUUC-Gmo-038692	Gadus morhua	52.67	2.00e-103	369.00
IUUC-Gga-040597	Gallus gallus	53.51	3.00e-105	375.00
IUUC-Gac-042004	Gasterosteus aculeatus	52.30	2.00e-99	356.00
IUUC-Gma-044134	Glycine max	71.08	3.00e-180	624.00
IUUC-Ggo-044761	Gorilla gorilla	54.52	1.00e-105	376.00
IUUC-Hsa-045698	Homo sapiens	51.52	1.00e-106	380.00
IUUC-Hvu-047649	Hordeum vulgare	74.28	0.00e+00	1350.00
IUUC-Itr-048697	Ictidomys tridecemlineatus	51.22	1.00e-106	379.00
IUUC-Lch-049674	Latimeria chalumnae	54.00	4.00e-108	385.00
IUUC-Lpe-051554	Leersia perrieri	84.75	0.00e+00	1594.00
IUUC-Loc-052623	Lepisosteus oculatus	54.09	5.00e-101	361.00
IUUC-Laf-054587	Loxodonta africana	51.22	3.00e-106	378.00
IUUC-Mcc-055851	Macaca mulatta	54.52	1.00e-105	376.00
IUUC-Meu-056704	Macropus eugenii	54.52	8.00e-106	377.00
IUUC-Mtr-058053	Medicago truncatula	70.04	0.00e+00	640.00
IUUC-Mga-059608	Meleagris gallopavo	52.03	3.00e-102	365.00
IUUC-Mmr-061154	Microcebus murinus	54.52	9.00e-106	377.00
IUUC-Mdo-062365	Monodelphis domestica	54.85	1.00e-105	376.00
IUUC-Mmu-063754	Mus musculus	51.52	4.00e-107	381.00
IUUC-Mac-064667	Musa acuminata	80.50	2.00e-180	624.00
IUUC-Mpu-066245	Mustela putorius furo	51.83	1.00e-106	380.00
IUUC-Mlu-067692	Myotis lucifugus	53.90	2.00e-105	375.00
IUUC-Nle-070051	Nomascus leucogenys	54.18	1.00e-104	373.00
IUUC-Opr-070855	Ochotona princeps	50.91	8.00e-106	377.00
IUUC-Ont-071883	Oreochromis niloticus	51.49	1.00e-99	356.00
IUUC-Oan-073293	Ornithorhynchus anatinus	54.80	4.00e-102	365.00
IUUC-Ocu-074644	Oryctolagus cuniculus	51.22	2.00e-106	379.00
IUUC-Oba-075448	Oryza barthii	96.15	0.00e+00	1669.00
IUUC-Obr-076385	Oryza brachyantha	88.37	0.00e+00	1615.00
IUUC-Ogl-077427	Oryza glaberrima	91.47	0.00e+00	1670.00
IUUC-Ogu-078428	Oryza glumaepatula	95.75	0.00e+00	1456.00
IUUC-Oin-079811	Oryza indica	90.11	0.00e+00	1659.00
IUUC-Olo-080245	Oryza longistaminata	86.32	0.00e+00	1557.00
IUUC-Ome-081239	Oryza meridionalis	95.40	0.00e+00	1645.00
IUUC-Oni-082640	Oryza nivara	96.15	0.00e+00	1669.00
IUUC-Oru-084609	Oryza rufipogon	96.15	0.00e+00	1669.00
IUUC-Osa-085988	Oryza sativa	90.48	0.00e+00	1547.00
IUUC-Ola-087483	Oryzias latipes	50.00	3.00e-95	342.00
IUUC-Oga-087964	Otolemur garnettii	54.52	5.00e-106	377.00
IUUC-Oar-089483	Ovis aries	50.00	4.00e-104	371.00
IUUC-Ptr-091387	Pan troglodytes	51.52	1.00e-106	380.00
IUUC-Pan-092623	Papio anubis	54.52	1.00e-105	376.00
IUUC-Psi-093830	Pelodiscus sinensis	54.09	4.00e-100	358.00
IUUC-Ppa-095379	Physcomitrella patens	83.00	8.00e-158	550.00
IUUC-Pfo-096755	Poecilia formosa	51.32	2.00e-99	355.00
IUUC-Pab-097564	Pongo abelii	54.52	3.00e-105	375.00
IUUC-Pop-099149	Populus trichocarpa	66.95	0.00e+00	643.00
IUUC-Pca-100357	Procavia capensis	58.33	2.00e-77	282.00
IUUC-Ppe-101237	Prunus persica	69.93	0.00e+00	649.00
IUUC-Pva-102397	Pteropus vampyrus	50.17	3.00e-93	335.00
IUUC-Rno-105349	Rattus norvegicus	54.05	9.00e-107	380.00
IUUC-Smo-109409	Selaginella moellendorffii	78.71	1.00e-160	559.00
IUUC-Sit-110360	Setaria italica	77.10	0.00e+00	1395.00
IUUC-Stu-112462	Solanum tuberosum	67.48	2.00e-175	608.00
IUUC-Sar-112953	Sorex araneus	46.05	3.00e-58	218.00
IUUC-Ssc-115949	Sus scrofa	43.98	9.00e-50	190.00
IUUC-Tgu-117461	Taeniopygia guttata	53.14	3.00e-106	378.00
IUUC-Tru-117865	Takifugu rubripes	50.00	3.00e-93	335.00
IUUC-Tsy-119036	Tarsius syrichta	60.33	3.00e-41	162.00
IUUC-Tni-120903	Tetraodon nigroviridis	49.83	8.00e-92	330.00
IUUC-Tca-121185	Theobroma cacao	55.30	0.00e+00	885.00
IUUC-Tae-125307	Triticum aestivum	75.35	0.00e+00	1359.00
IUUC-Tur-126411	Triticum urartu	60.50	0.00e+00	1024.00
IUUC-Ttr-128172	Tursiops truncatus	54.52	2.00e-106	379.00
IUUC-Vvi-131489	Vitis vinifera	67.49	0.00e+00	640.00
IUUC-Xtr-132915	Xenopus tropicalis	50.31	7.00e-101	360.00
IUUC-Xma-134133	Xiphophorus maculatus	50.99	4.00e-97	348.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence