iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Stu-112439

Ensembl Protein ID

PGSC0003DMT400013321

UniProt Accession

P62981; O82079; P03993; P27083; P69324; RS27A_SOLTU

Genbank Protein ID

CAA77735.1; AAA19247.1

Protein Name

Ubiquitin-40S ribosomal protein S27a; Ubiquitin; 40S ribosomal protein S27a

Genbank Nucleotide ID

Z11669; L22576

Gene Name

UBI3; RPS27A

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PGSC0003DMG400005199	PGSC0003DMT400013321	PGSC0003DMT400013321

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UBL/NEDD8	2.80e-41	140.9	1	76
ULD/UDP/UBQ/UBQ_PIM	1.10e-27	97.0	1	73

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UBL/NEDD8

   S: 1    mlikvktLtgkeieieieesdtierikerveekeGiPPsqqrliyaGkqleddktaadynlekgsvLhLvLaLrGG 76
           m+i+vktLtgk+i++e+e+sdti+++k+++++keGiPP+qqrli+aGkqled++t+adyn++k+s+LhLvL+LrGG
   Q: 1    MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
           89*************************************************************************9 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
           m+++vktl+gk+++lev+++dt+ ++K+ki+++ g+pp+qq+LI+aGk+L+D +tL +++i+++s++hlv++ 
   Q: 1    MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73
           99********************************************************************986 PP

Organism

Solanum tuberosum

Functional Description
(View)

Ribosomal protein S27a is part of the 40S ribosomal subunit.

Protein Sequence
(Fasta)

MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN 60
IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKKKKVKL AVLQFYKVDD TGKVQRLRKE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCTTACACTC TCATTCCATC AACAAAGAAA CCCTAAAAGC CGCAGCGCCA CTGATTTCTC 60
TCCTCCAGGC GAAGATGCAG ATCTTCGTGA AAACCCTAAC GGGGAAGACG ATCACCCTAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-1017--Isopeptide bond
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0689--Ribosomal protein
KW-0832--Ubl conjugation
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR002906--Ribosomal_S27a
IPR011332--Ribosomal_zn-bd
IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2

Pfam

PF01599--Ribosomal_S27
PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM01402--Ribosomal_S27
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0005840--C:ribosome
GO:0046872--F:metal ion binding
GO:0003735--F:structural constituent of ribosome
GO:0006412--P:translation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001873	Ailuropoda melanoleuca	85.62	5.00e-58	215.00
IUUC-Apl-003364	Anas platyrhynchos	75.82	2.00e-50	189.00
IUUC-Aca-005055	Anolis carolinensis	84.97	1.00e-63	234.00
IUUC-Acl-008099	Aspergillus clavatus	82.35	5.00e-54	202.00
IUUC-Afl-008474	Aspergillus flavus	82.35	1.00e-53	201.00
IUUC-Ani-009265	Aspergillus nidulans	82.35	2.00e-53	200.00
IUUC-Aor-009936	Aspergillus oryzae	82.35	1.00e-53	201.00
IUUC-Ame-011421	Astyanax mexicanus	85.62	1.00e-57	213.00
IUUC-Bgr-011984	Blumeria graminis	82.47	4.00e-60	222.00
IUUC-Bta-012585	Bos taurus	85.62	5.00e-58	215.00
IUUC-Bci-013920	Botrytis cinerea	82.35	8.00e-54	201.00
IUUC-Bdi-014571	Brachypodium distachyon	96.73	1.00e-63	234.00
IUUC-Cja-019661	Callithrix jacchus	84.97	2.00e-53	199.00
IUUC-Cfa-020795	Canis familiaris	85.62	5.00e-58	215.00
IUUC-Cpo-021905	Cavia porcellus	84.52	1.00e-56	210.00
IUUC-Csa-023120	Chlorocebus sabaeus	85.62	5.00e-58	215.00
IUUC-Csv-026028	Ciona savignyi	77.27	1.00e-52	197.00
IUUC-Dre-028206	Danio rerio	85.62	1.00e-57	213.00
IUUC-Dno-029073	Dasypus novemcinctus	85.62	5.00e-58	215.00
IUUC-Dme-032068	Drosophila melanogaster	83.66	3.00e-51	192.00
IUUC-Ete-032297	Echinops telfairi	59.48	1.00e-47	181.00
IUUC-Eca-034346	Equus caballus	86.18	3.00e-58	216.00
IUUC-Fca-035555	Felis catus	85.62	5.00e-58	215.00
IUUC-Fal-037049	Ficedula albicollis	85.62	3.00e-58	216.00
IUUC-Fox-037994	Fusarium oxysporum	83.01	1.00e-58	217.00
IUUC-Gmo-039231	Gadus morhua	85.62	2.00e-57	213.00
IUUC-Gga-040938	Gallus gallus	85.62	3.00e-58	216.00
IUUC-Gac-041956	Gasterosteus aculeatus	85.62	1.00e-57	214.00
IUUC-Ggo-044980	Gorilla gorilla	85.62	5.00e-58	215.00
IUUC-Hsa-046329	Homo sapiens	85.62	5.00e-58	215.00
IUUC-Itr-047994	Ictidomys tridecemlineatus	85.62	5.00e-58	215.00
IUUC-Kpa-049159	Komagataella pastoris	81.58	5.00e-56	208.00
IUUC-Lch-050032	Latimeria chalumnae	85.62	3.00e-58	216.00
IUUC-Loc-052020	Lepisosteus oculatus	85.62	1.00e-57	213.00
IUUC-Lma-053163	Leptosphaeria maculans	83.01	3.00e-60	222.00
IUUC-Laf-054502	Loxodonta africana	81.56	2.00e-47	179.00
IUUC-Mcc-055895	Macaca mulatta	85.62	5.00e-58	215.00
IUUC-Meu-056529	Macropus eugenii	85.62	5.00e-58	215.00
IUUC-Mga-059211	Meleagris gallopavo	80.42	1.00e-49	187.00
IUUC-Mmr-060710	Microcebus murinus	84.97	2.00e-63	233.00
IUUC-Mdo-062150	Monodelphis domestica	84.52	5.00e-57	212.00
IUUC-Mmu-064336	Mus musculus	84.97	2.00e-57	213.00
IUUC-Mpu-066613	Mustela putorius furo	85.62	5.00e-58	215.00
IUUC-Mlu-067676	Myotis lucifugus	85.62	5.00e-58	215.00
IUUC-Nle-069607	Nomascus leucogenys	82.35	4.00e-55	205.00
IUUC-Opr-070523	Ochotona princeps	84.21	7.00e-55	204.00
IUUC-Ont-071636	Oreochromis niloticus	85.62	1.00e-57	213.00
IUUC-Oan-073638	Ornithorhynchus anatinus	85.62	3.00e-58	216.00
IUUC-Ocu-074497	Oryctolagus cuniculus	85.62	5.00e-58	215.00
IUUC-Oba-075488	Oryza barthii	96.73	1.00e-63	234.00
IUUC-Obr-076443	Oryza brachyantha	96.73	1.00e-63	234.00
IUUC-Ogl-077000	Oryza glaberrima	96.73	1.00e-63	234.00
IUUC-Oin-080161	Oryza indica	96.73	1.00e-63	234.00
IUUC-Olo-080936	Oryza longistaminata	94.44	8.00e-27	110.00
IUUC-Ome-081322	Oryza meridionalis	96.73	1.00e-63	234.00
IUUC-Oru-085032	Oryza rufipogon	96.73	1.00e-63	234.00
IUUC-Osa-085398	Oryza sativa	96.73	1.00e-63	234.00
IUUC-Ola-086383	Oryzias latipes	85.62	9.00e-58	214.00
IUUC-Oga-089160	Otolemur garnettii	73.86	3.00e-55	206.00
IUUC-Oar-090107	Ovis aries	86.18	5.00e-58	215.00
IUUC-Ptr-090693	Pan troglodytes	85.62	5.00e-58	215.00
IUUC-Pan-092065	Papio anubis	85.62	5.00e-58	215.00
IUUC-Psi-093901	Pelodiscus sinensis	83.94	4.00e-49	185.00
IUUC-Pma-094647	Petromyzon marinus	82.35	1.00e-37	146.00
IUUC-Pfo-097442	Poecilia formosa	85.62	1.00e-57	213.00
IUUC-Pab-098246	Pongo abelii	75.16	4.00e-55	205.00
IUUC-Pva-102665	Pteropus vampyrus	85.43	4.00e-56	208.00
IUUC-Rno-105805	Rattus norvegicus	84.97	2.00e-57	213.00
IUUC-Sha-106772	Sarcophilus harrisii	85.62	6.00e-58	215.00
IUUC-Sja-107726	Schizosaccharomyces japonicus	86.39	2.00e-57	213.00
IUUC-Ssl-108492	Sclerotinia sclerotiorum	82.35	8.00e-54	201.00
IUUC-Sit-110054	Setaria italica	97.39	8.00e-70	254.00
IUUC-Sly-111074	Solanum lycopersicum	99.36	4.00e-73	265.00
IUUC-Sbi-113920	Sorghum bicolor	96.73	3.00e-69	252.00
IUUC-Ssc-115514	Sus scrofa	85.62	5.00e-58	215.00
IUUC-Tgu-116890	Taeniopygia guttata	85.06	7.00e-57	211.00
IUUC-Tru-118475	Takifugu rubripes	85.62	1.00e-57	213.00
IUUC-Tsy-119447	Tarsius syrichta	85.62	4.00e-58	215.00
IUUC-Tni-119751	Tetraodon nigroviridis	82.48	2.00e-47	179.00
IUUC-Tre-122027	Trichoderma reesei	82.24	7.00e-59	218.00
IUUC-Tvi-122659	Trichoderma virens	82.24	7.00e-59	218.00
IUUC-Tae-124683	Triticum aestivum	96.73	1.00e-63	234.00
IUUC-Tbe-127851	Tupaia belangeri	96.10	2.00e-39	152.00
IUUC-Ttr-128453	Tursiops truncatus	85.62	5.00e-58	215.00
IUUC-Vpa-130119	Vicugna pacos	67.76	8.00e-37	144.00
IUUC-Xtr-131977	Xenopus tropicalis	77.12	9.00e-50	187.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence