iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000003026.7	ENSRNOT00000004042.5	ENSRNOP00000004042.4
ENSRNOG00000003026.7	ENSRNOT00000084123.1	ENSRNOP00000074265.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	RAID2
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	8.50e-21	73.8	162	201
ULD/UDP/UBQ/UBQ_PIM	8.70e-26	90.1	3	80

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 2    ededkleqlveMGFdreealqaLraannnleaAveyLldg 41
           e+e +l ++++MG++re+++ aLra++nn+ +AveyLl+g
   Q: 162  EYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 201
           7899**********************************97 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           +++t+ktl++++f++++++d+tv+ lKeki++e+g   +p++ qkLIyaGkiL+Dd +++e++i+++++v+++v+k+k
   Q: 3    VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGrdaFPVAGQKLIYAGKILSDDIPIKEYHIDEKNFVVVMVTKAK 80
           68*************************************************************************987 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MAVTITLKTL QQQTFKIRME PDETVKVLKE KIEAEKGRDA FPVAGQKLIY AGKILSDDIP 60
IKEYHIDEKN FVVVMVTKAK AGQGTPAPPE ASPTAAPEPS TPFPPAPASG MSHPPPSNRE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGGCTGGGCG CTAAGATGGC GGCGGCGTGA GTTGCATGTT GTGCGAGGAT CCCGGGGCTG 60
CCGCATTGCT CCGGCCCCGC CATGGCCGTC ACCATCACAC TTAAAACGTT GCAGCAGCAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005829--C:cytosol
GO:0005815--C:microtubule organizing center
GO:0005654--C:nucleoplasm
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0045070--P:positive regulation of viral genome replication
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0032434--P:regulation of proteasomal ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000770	Aegilops tauschii	38.52	1.00e-32	134.00
IUUC-Aml-001515	Ailuropoda melanoleuca	89.69	1.00e-139	489.00
IUUC-Atr-002756	Amborella trichopoda	35.82	2.00e-47	183.00
IUUC-Aca-004704	Anolis carolinensis	80.06	2.00e-114	405.00
IUUC-Aly-006159	Arabidopsis lyrata	34.41	2.00e-49	189.00
IUUC-Ago-007830	Ashbya gossypii	26.60	2.00e-14	73.60
IUUC-Acl-008212	Aspergillus clavatus	36.15	2.00e-24	106.00
IUUC-Afl-008605	Aspergillus flavus	45.57	7.00e-19	88.60
IUUC-Ani-009460	Aspergillus nidulans	38.80	5.00e-29	122.00
IUUC-Aor-010032	Aspergillus oryzae	45.57	1.00e-18	87.40
IUUC-Bgr-012056	Blumeria graminis	35.15	3.00e-22	99.00
IUUC-Bta-012377	Bos taurus	93.09	3.00e-147	514.00
IUUC-Bol-015272	Brassica oleracea	33.83	3.00e-50	192.00
IUUC-Bra-016970	Brassica rapa	34.10	7.00e-49	187.00
IUUC-Cel-018364	Caenorhabditis elegans	30.54	1.00e-27	116.00
IUUC-Cja-018946	Callithrix jacchus	93.66	3.00e-142	497.00
IUUC-Cfa-020577	Canis familiaris	94.20	1.00e-152	532.00
IUUC-Cpo-021850	Cavia porcellus	91.99	1.00e-168	585.00
IUUC-Csa-023183	Chlorocebus sabaeus	94.77	4.00e-150	523.00
IUUC-Dno-030017	Dasypus novemcinctus	90.65	2.00e-128	452.00
IUUC-Dor-030358	Dipodomys ordii	84.34	8.00e-126	443.00
IUUC-Eca-033599	Equus caballus	90.27	6.00e-131	460.00
IUUC-Fca-036051	Felis catus	93.37	1.00e-150	525.00
IUUC-Fox-037960	Fusarium oxysporum	48.51	4.00e-15	75.90
IUUC-Fso-038107	Fusarium solani	38.31	3.00e-24	105.00
IUUC-Gmo-038528	Gadus morhua	58.56	2.00e-90	325.00
IUUC-Ggr-040116	Gaeumannomyces graminis	50.50	2.00e-15	77.00
IUUC-Gga-040133	Gallus gallus	87.85	4.00e-76	278.00
IUUC-Gac-042239	Gasterosteus aculeatus	55.47	5.00e-87	314.00
IUUC-Ggo-045084	Gorilla gorilla	95.04	6.00e-150	523.00
IUUC-Hsa-046614	Homo sapiens	95.04	1.00e-150	526.00
IUUC-Itr-047875	Ictidomys tridecemlineatus	94.77	8.00e-169	586.00
IUUC-Lch-050563	Latimeria chalumnae	62.31	6.00e-103	367.00
IUUC-Loc-051758	Lepisosteus oculatus	61.24	7.00e-86	310.00
IUUC-Laf-054589	Loxodonta africana	93.66	4.00e-141	494.00
IUUC-Mcc-055860	Macaca mulatta	94.77	4.00e-150	523.00
IUUC-Meu-056459	Macropus eugenii	94.42	1.00e-104	372.00
IUUC-Mmr-060819	Microcebus murinus	94.48	6.00e-165	573.00
IUUC-Mdo-062742	Monodelphis domestica	85.23	7.00e-147	513.00
IUUC-Mmu-063929	Mus musculus	96.97	5.00e-169	587.00
IUUC-Mac-064724	Musa acuminata	33.09	2.00e-44	173.00
IUUC-Mpu-066684	Mustela putorius furo	93.94	1.00e-152	532.00
IUUC-Mlu-067787	Myotis lucifugus	92.01	4.00e-147	514.00
IUUC-Nle-069846	Nomascus leucogenys	83.88	6.00e-131	460.00
IUUC-Oan-073572	Ornithorhynchus anatinus	79.28	6.00e-131	460.00
IUUC-Ocu-074968	Oryctolagus cuniculus	92.40	2.00e-104	373.00
IUUC-Oga-089075	Otolemur garnettii	94.20	1.00e-148	519.00
IUUC-Oar-090387	Ovis aries	92.29	4.00e-141	494.00
IUUC-Ptr-090912	Pan troglodytes	91.46	5.00e-140	490.00
IUUC-Pan-092140	Papio anubis	94.77	2.00e-149	521.00
IUUC-Psi-093347	Pelodiscus sinensis	87.43	2.00e-63	236.00
IUUC-Pno-095064	Phaeosphaeria nodorum	38.19	4.00e-17	82.40
IUUC-Ppa-095654	Physcomitrella patens	41.22	3.00e-36	145.00
IUUC-Pfo-096607	Poecilia formosa	62.99	1.00e-95	343.00
IUUC-Pab-097738	Pongo abelii	91.18	2.00e-143	501.00
IUUC-Pop-099642	Populus trichocarpa	35.50	4.00e-51	195.00
IUUC-Pca-100348	Procavia capensis	90.93	1.00e-139	489.00
IUUC-Pva-102412	Pteropus vampyrus	93.39	1.00e-150	525.00
IUUC-Pgr-103618	Puccinia graminis	36.68	6.00e-25	108.00
IUUC-Sha-106918	Sarcophilus harrisii	86.26	4.00e-134	471.00
IUUC-Sja-107851	Schizosaccharomyces japonicus	35.81	6.00e-45	174.00
IUUC-Spo-108298	Schizosaccharomyces pombe	40.33	3.00e-37	149.00
IUUC-Smo-109129	Selaginella moellendorffii	38.40	7.00e-33	134.00
IUUC-Sit-109813	Setaria italica	34.11	2.00e-44	172.00
IUUC-Sly-111480	Solanum lycopersicum	37.03	6.00e-54	204.00
IUUC-Stu-112054	Solanum tuberosum	36.50	8.00e-51	194.00
IUUC-Ssc-115460	Sus scrofa	93.11	9.00e-150	523.00
IUUC-Tsy-119385	Tarsius syrichta	77.21	3.00e-67	247.00
IUUC-Tca-121594	Theobroma cacao	35.26	2.00e-50	193.00
IUUC-Tre-121911	Trichoderma reesei	50.50	9.00e-16	77.80
IUUC-Tur-126610	Triticum urartu	38.52	6.00e-33	135.00
IUUC-Tbe-127603	Tupaia belangeri	84.67	6.00e-55	207.00
IUUC-Ttr-129232	Tursiops truncatus	85.95	4.00e-144	504.00
IUUC-Xma-133647	Xiphophorus maculatus	63.66	1.00e-92	333.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence