iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein-protein Interaction
HINT
Post-translational Modifications (PTMs)
dbPTM
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UBL/NEDD8	1.80e-41	141.1	1	76
ULD/UDP/UBQ/UBQ_PIM	4.30e-28	97.9	1	73

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UBL/NEDD8

   S: 1    mlikvktLtgkeieieieesdtierikerveekeGiPPsqqrliyaGkqleddktaadynlekgsvLhLvLaLrGG 76
           m+i+vktLtgk+i++e+e+sdti+++k+++++keGiPP+qqrli+aGkqled++t+adyn++k+s+LhLvL+LrGG
   Q: 1    MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
           89*************************************************************************9 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
           m+++vktl+gk+++lev+++dt+ ++K+ki+++ g+pp+qq+LI+aGk+L+D +tL +++i+++s++hlv++ 
   Q: 1    MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73
           99********************************************************************986 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Ribosomal protein L40-1 is part of the 60S ribosomal subunit.

Protein Sequence
(Fasta)

MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN 60
IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY ARLHPRAVNC RKKKCGHSNQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAAAACCCTA AGAAATGGAT AAAGTATAAA GCTTCATTTT TTACACTGCA AACGCCGTTT 60
CGAGACTTCC GGCGAAGAAG ACGAACGCAA AGATGCAGAT TTTCGTGAAA ACGCTAACCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-1017--Isopeptide bond
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0689--Ribosomal protein

Interpro

IPR001975--Ribosomal_L40e
IPR011332--Ribosomal_zn-bd
IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2

Pfam

PF01020--Ribosomal_L40e
PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM01377--Ribosomal_L40e
SM00213--UBQ

Gene Ontology

GO:0022625--C:cytosolic large ribosomal subunit
GO:0005730--C:nucleolus
GO:0003735--F:structural constituent of ribosome
GO:0006412--P:translation

KEGG

ath:AT2G36170; ath:AT3G52590

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001006	Aegilops tauschii	60.93	8.00e-47	178.00
IUUC-Aml-001246	Ailuropoda melanoleuca	92.19	7.00e-67	244.00
IUUC-Atr-003081	Amborella trichopoda	79.07	1.00e-49	187.00
IUUC-Apl-004069	Anas platyrhynchos	91.57	2.00e-41	159.00
IUUC-Ago-007932	Ashbya gossypii	89.84	3.00e-65	238.00
IUUC-Acl-008350	Aspergillus clavatus	84.21	2.00e-61	226.00
IUUC-Afl-008554	Aspergillus flavus	90.62	2.00e-65	239.00
IUUC-Afu-008984	Aspergillus fumigatus	90.62	8.00e-65	238.00
IUUC-Ang-009609	Aspergillus niger	89.84	1.00e-64	237.00
IUUC-Aor-009991	Aspergillus oryzae	88.98	2.00e-63	233.00
IUUC-Ate-010252	Aspergillus terreus	90.40	9.00e-64	236.00
IUUC-Ame-010785	Astyanax mexicanus	89.47	7.00e-48	181.00
IUUC-Bgr-012115	Blumeria graminis	89.60	8.00e-63	231.00
IUUC-Bta-013360	Bos taurus	92.19	7.00e-67	244.00
IUUC-Bci-013851	Botrytis cinerea	90.62	1.00e-65	240.00
IUUC-Bdi-014499	Brachypodium distachyon	97.66	6.00e-71	258.00
IUUC-Bol-015961	Brassica oleracea	99.22	4.00e-72	261.00
IUUC-Cel-018677	Caenorhabditis elegans	89.06	2.00e-63	233.00
IUUC-Cja-019572	Callithrix jacchus	92.19	7.00e-67	244.00
IUUC-Cfa-020339	Canis familiaris	92.19	7.00e-67	244.00
IUUC-Cpo-021534	Cavia porcellus	92.19	7.00e-67	244.00
IUUC-Cre-022567	Chlamydomonas reinhardtii	93.75	1.00e-68	250.00
IUUC-Csa-023398	Chlorocebus sabaeus	92.19	7.00e-67	244.00
IUUC-Cin-025266	Ciona intestinalis	89.06	6.00e-65	238.00
IUUC-Csv-026105	Ciona savignyi	88.98	7.00e-65	238.00
IUUC-Cgl-026502	Colletotrichum gloeosporioides	90.40	1.00e-62	233.00
IUUC-Cne-026913	Cryptococcus neoformans	88.28	6.00e-64	234.00
IUUC-Cme-027344	Cyanidioschyzon merolae	91.11	3.00e-44	169.00
IUUC-Dre-028761	Danio rerio	91.41	3.00e-66	242.00
IUUC-Dno-028899	Dasypus novemcinctus	92.19	6.00e-67	244.00
IUUC-Dme-031588	Drosophila melanogaster	91.41	2.00e-66	243.00
IUUC-Ete-033120	Echinops telfairi	92.19	7.00e-67	244.00
IUUC-Eca-033787	Equus caballus	92.19	7.00e-67	244.00
IUUC-Fca-035725	Felis catus	92.19	7.00e-67	244.00
IUUC-Fox-037870	Fusarium oxysporum	90.62	1.00e-65	240.00
IUUC-Fso-038461	Fusarium solani	97.47	2.00e-41	159.00
IUUC-Gmo-039163	Gadus morhua	92.97	2.00e-67	246.00
IUUC-Ggr-040034	Gaeumannomyces graminis	90.62	8.00e-66	241.00
IUUC-Gga-040909	Gallus gallus	92.19	1.00e-66	244.00
IUUC-Gac-041640	Gasterosteus aculeatus	92.19	9.00e-67	244.00
IUUC-Gma-043254	Glycine max	99.22	1.00e-72	264.00
IUUC-Ggo-045411	Gorilla gorilla	92.19	7.00e-67	244.00
IUUC-Hsa-046609	Homo sapiens	72.99	2.00e-51	193.00
IUUC-Hvu-047579	Hordeum vulgare	70.59	2.00e-51	193.00
IUUC-Itr-048586	Ictidomys tridecemlineatus	92.19	4.00e-67	246.00
IUUC-Kpa-049279	Komagataella pastoris	90.62	8.00e-66	241.00
IUUC-Lch-049971	Latimeria chalumnae	92.97	3.00e-67	246.00
IUUC-Lpe-051472	Leersia perrieri	82.58	3.00e-53	202.00
IUUC-Loc-052117	Lepisosteus oculatus	92.19	7.00e-67	244.00
IUUC-Lma-053049	Leptosphaeria maculans	92.97	7.00e-67	244.00
IUUC-Laf-054284	Loxodonta africana	92.19	3.00e-67	246.00
IUUC-Mcc-055710	Macaca mulatta	90.77	2.00e-65	241.00
IUUC-Meu-056411	Macropus eugenii	92.19	7.00e-67	244.00
IUUC-Mor-057008	Magnaporthe oryzae	90.62	2.00e-65	239.00
IUUC-Mpo-057360	Magnaporthe poae	90.62	1.00e-65	240.00
IUUC-Mtr-058437	Medicago truncatula	98.44	2.00e-71	259.00
IUUC-Mla-059080	Melampsora laricipopulina	89.32	3.00e-49	185.00
IUUC-Mmr-061335	Microcebus murinus	86.72	2.00e-60	223.00
IUUC-Mdo-062752	Monodelphis domestica	92.19	7.00e-67	244.00
IUUC-Mmu-063548	Mus musculus	92.19	5.00e-67	246.00
IUUC-Mac-064915	Musa acuminata	98.44	1.00e-71	260.00
IUUC-Mpu-066513	Mustela putorius furo	92.19	7.00e-67	244.00
IUUC-Mlu-068010	Myotis lucifugus	89.84	3.00e-65	239.00
IUUC-Nfi-068358	Neosartorya fischeri	90.48	6.00e-64	234.00
IUUC-Ncr-068799	Neurospora crassa	90.62	2.00e-65	239.00
IUUC-Opr-070655	Ochotona princeps	92.19	7.00e-67	244.00
IUUC-Ont-072180	Oreochromis niloticus	92.86	5.00e-66	241.00
IUUC-Oan-073196	Ornithorhynchus anatinus	92.19	7.00e-67	244.00
IUUC-Oba-075092	Oryza barthii	98.44	2.00e-71	259.00
IUUC-Obr-076156	Oryza brachyantha	98.44	1.00e-71	260.00
IUUC-Ogl-077471	Oryza glaberrima	98.44	2.00e-71	259.00
IUUC-Ogu-078259	Oryza glumaepatula	98.44	2.00e-71	259.00
IUUC-Oin-079901	Oryza indica	98.44	2.00e-71	259.00
IUUC-Ome-081343	Oryza meridionalis	98.44	2.00e-71	259.00
IUUC-Oni-082301	Oryza nivara	83.17	2.00e-34	138.00
IUUC-Opu-083839	Oryza punctata	66.92	3.00e-37	149.00
IUUC-Oru-085252	Oryza rufipogon	98.44	2.00e-71	259.00
IUUC-Osa-085747	Oryza sativa	80.60	3.00e-52	196.00
IUUC-Ola-086333	Oryzias latipes	91.41	1.00e-66	243.00
IUUC-Olu-087819	Ostreococcus lucimarinus	85.16	2.00e-62	229.00
IUUC-Oga-088027	Otolemur garnettii	92.19	7.00e-67	244.00
IUUC-Oar-090419	Ovis aries	92.19	7.00e-67	244.00
IUUC-Ptr-091593	Pan troglodytes	92.19	7.00e-67	244.00
IUUC-Pan-091806	Papio anubis	89.84	1.00e-65	240.00
IUUC-Psi-093654	Pelodiscus sinensis	92.19	7.00e-67	244.00
IUUC-Ppa-095174	Physcomitrella patens	97.66	4.00e-71	258.00
IUUC-Pfo-096492	Poecilia formosa	92.19	1.00e-66	243.00
IUUC-Pab-098004	Pongo abelii	92.19	7.00e-67	244.00
IUUC-Pop-098929	Populus trichocarpa	98.44	1.00e-71	260.00
IUUC-Ppe-101497	Prunus persica	98.44	6.00e-72	261.00
IUUC-Pva-102945	Pteropus vampyrus	92.19	7.00e-67	244.00
IUUC-Pgr-103268	Puccinia graminis	89.84	2.00e-65	240.00
IUUC-Ptt-103804	Puccinia triticina	92.08	3.00e-51	192.00
IUUC-Pte-104101	Pyrenophora teres	91.41	3.00e-66	243.00
IUUC-Pyt-104639	Pyrenophora triticirepentis	91.41	6.00e-66	241.00
IUUC-Rno-105290	Rattus norvegicus	92.19	7.00e-67	244.00
IUUC-Sce-106249	Saccharomyces cerevisiae	89.84	3.00e-65	239.00
IUUC-Sha-106570	Sarcophilus harrisii	92.19	7.00e-67	244.00
IUUC-Sja-107834	Schizosaccharomyces japonicus	91.41	5.00e-66	241.00
IUUC-Spo-108045	Schizosaccharomyces pombe	90.62	3.00e-65	239.00
IUUC-Ssl-108670	Sclerotinia sclerotiorum	91.41	6.00e-66	241.00
IUUC-Sit-110085	Setaria italica	95.24	1.00e-69	254.00
IUUC-Sly-111884	Solanum lycopersicum	98.44	1.00e-71	260.00
IUUC-Stu-112385	Solanum tuberosum	97.52	2.00e-67	246.00
IUUC-Sar-112942	Sorex araneus	90.62	7.00e-66	241.00
IUUC-Sbi-114790	Sorghum bicolor	97.66	1.00e-70	256.00
IUUC-Sre-114908	Sporisorium reilianum	91.41	2.00e-65	239.00
IUUC-Ssc-116417	Sus scrofa	92.19	7.00e-67	244.00
IUUC-Tru-117557	Takifugu rubripes	92.97	2.00e-67	246.00
IUUC-Tni-119715	Tetraodon nigroviridis	92.97	2.00e-67	246.00
IUUC-Tca-121404	Theobroma cacao	99.22	5.00e-72	262.00
IUUC-Tvi-122611	Trichoderma virens	89.84	1.00e-65	240.00
IUUC-Tae-125373	Triticum aestivum	79.62	5.00e-66	242.00
IUUC-Tur-126527	Triticum urartu	97.66	6.00e-71	258.00
IUUC-Tme-127138	Tuber melanosporum	91.20	1.00e-64	237.00
IUUC-Ttr-128939	Tursiops truncatus	92.19	7.00e-67	244.00
IUUC-Uma-129619	Ustilago maydis	91.41	2.00e-65	239.00
IUUC-Vda-129775	Verticillium dahliae	88.89	2.00e-63	233.00
IUUC-Vvi-130859	Vitis vinifera	99.22	4.00e-72	261.00
IUUC-Xtr-131921	Xenopus tropicalis	92.19	7.00e-67	244.00
IUUC-Xma-134071	Xiphophorus maculatus	92.19	1.00e-66	243.00
IUUC-Yli-134671	Yarrowia lipolytica	90.62	2.00e-65	239.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence