iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099317

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Transducin family protein

Genbank Nucleotide ID

CM000348

Gene Name

POPTRDRAFT_570229; POPTR_0012s09680g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0012s09680	POPTR_0012s09680.1	POPTR_0012s09680.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.40e-07	32.0	288	320

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 3    tdsvtclaf.sd.tllvsGsdDgtikvWDlrtg 33
           ++s++++a  ++ + ++s++ D  +++WD++t 
   Q: 288  SGSIRSIARhPElPVIASCGLDSYLRLWDIKTR 320
           67899999789999***************8875 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MPRTTTLECP GCPPLRALTF DSLGLIKVIE SRGERGTPQV VERWGDPVSS KCVLAASFDD 60
RKKDPVEVVN PLNGEIHVVF SNVGEDGVQP EDDAISGLHL FRRERSSGSC TLLTCTSKGN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCCGCGAA CTACGACACT AGAGTGCCCA GGTTGCCCTC CACTTCGAGC TCTAACTTTT 60
GATTCTCTGG GTCTTATCAA AGGTAAATAC ATTACCAATT CTCTTTAACA ACCCAATGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0030687--C:preribosome, large subunit precursor
GO:0042273--P:ribosomal large subunit biogenesis

KEGG

pop:POPTR_0012s09680g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ame-011942	Astyanax mexicanus	32.76	2.00e-26	112.00
IUUC-Cho-024385	Choloepus hoffmanni	40.98	3.00e-06	44.70
IUUC-Eca-033792	Equus caballus	31.64	1.00e-12	67.00
IUUC-Gmo-039064	Gadus morhua	36.46	9.00e-28	116.00
IUUC-Gac-042170	Gasterosteus aculeatus	33.00	9.00e-30	123.00
IUUC-Hsa-046615	Homo sapiens	33.07	3.00e-26	112.00
IUUC-Kpa-049188	Komagataella pastoris	27.22	5.00e-17	81.30
IUUC-Lch-050396	Latimeria chalumnae	34.63	2.00e-30	125.00
IUUC-Mdo-062069	Monodelphis domestica	37.71	1.00e-25	110.00
IUUC-Opr-070402	Ochotona princeps	28.73	3.00e-13	68.60
IUUC-Ont-072078	Oreochromis niloticus	33.70	4.00e-25	108.00
IUUC-Ola-087342	Oryzias latipes	31.06	7.00e-26	110.00
IUUC-Psi-093061	Pelodiscus sinensis	35.80	2.00e-25	109.00
IUUC-Pma-094281	Petromyzon marinus	34.64	3.00e-22	99.00
IUUC-Pfo-097074	Poecilia formosa	31.00	1.00e-22	100.00
IUUC-Sha-107127	Sarcophilus harrisii	37.71	5.00e-25	108.00
IUUC-Tru-118516	Takifugu rubripes	35.56	3.00e-25	108.00
IUUC-Tni-120527	Tetraodon nigroviridis	35.36	5.00e-26	111.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence