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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-007289
UUCD1 version UUC-ArT-00085
Ensembl Protein ID AT3G02260.4
UniProt Accession Q9SRU2; F4J4S0; BIG_ARATH
Genbank Protein ID AAM77595.1; AAF02112.1; AEE73785.1
Protein Name Auxin transport protein BIG; Protein ATTENUATED SHADE AVOIDANCE 1; Protein CORYMBOSA1; Protein DARK OVER-EXPRESSION OF CAB 1; Protein LOW PHOSPHATE-RESISTANT ROOT 1; Protein TRANSPORT INHIBITOR RESPONSE 3; Protein UMBRELLA 1
Genbank Nucleotide ID AF507018; AC009755; CP002686
Gene Name BIG; ASA1; CRM1; DOC1; GA6; LPR1; TIR3; UMB1; At3g02260; F14P3.9
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT3G02260 AT3G02260.4 AT3G02260.4
AT3G02260 AT3G02260.2 AT3G02260.2
AT3G02260 AT3G02260.3 AT3G02260.3
AT3G02260 AT3G02260.1 AT3G02260.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
Protein-protein Interaction
HINTMentha
Post-translational Modifications (PTMs)
dbPPTdbPTMUniProt
Protein Expression/Proteomics
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/N-recognin/UBR-box 31.66 0.00e+00 899.00 IUUC-Hsa-046955
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Required for auxin efflux and polar auxin transport (PAT) influencing auxin-mediated developmental responses (e.g. cell elongation, apical dominance, lateral root production, inflorescence architecture, general growth and development). Controls the elongation of the pedicels and stem internodes through auxin action. Involved in the expression modulation of light-regulated genes. Represses CAB1 and CAB3 genes expression in etiolated seedlings. Confers sensitivity to the auxin transport inhibitors N-1-naphthylphthalamic acid (NPA), 2-carboxyphenyl-3-phenylpropane-l,2-dione (CPD), and methyl-2-chloro-9-hydroxyfluorene-9-carboxylate (CFM). Influences the polarized subcellular distribution of the auxin transporter PIN1 in response to auxin transport inhibitors. Plays a role in the regulation of responses to phytohormones such as auxin, cytokinins, ethylene and gibberellic acid (GA), particularly during light-mediated stimuli (e.g. shade ovoidance, etiolation). Required for pericycle cell activation to form lateral root primordia (LRP) in both high and low phosphate P conditions. Necessary for the plant-growth promotion and lateral root development mediated by the fungus Trichoderma virens.
 Required for auxin efflux and polar auxin transport (PAT) influencing auxin-mediated developmental responses (e.g. cell elongation, apical dominance, lateral root production, inflorescence architecture, general growth and development). Controls the elongation of the pedicels and stem internodes through auxin action. Involved in the expression modulation of light-regulated genes. Represses CAB1 and CAB3 genes expression in etiolated seedlings. Confers sensitivity to the auxin transport inhibitors N-1-naphthylphthalamic acid (NPA), 2-carboxyphenyl-3-phenylpropane-l,2-dione (CPD), and methyl-2-chloro-9-hydroxyfluorene-9-carboxylate (CFM). Influences the polarized subcellular distribution of the auxin transporter PIN1 in response to auxin transport inhibitors. Plays a role in the regulation of responses to phytohormones such as auxin, cytokinins, ethylene and gibberellic acid (GA), particularly during light-mediated stimuli (e.g. shade ovoidance, etiolation). Required for pericycle cell activation to form lateral root primordia (LRP) in both high and low phosphate P conditions. Necessary for the plant-growth promotion and lateral root development mediated by the fungus Trichoderma virens.
Protein Sequence
(Fasta)
MADDLANLCR FLFDDTAFPS LSSSASSDLF SRRLRSDDSI KRGLRSFYLL LRWGVAPIGG 60
DDADSSGKLR FETWSDSQLQ ALVSISQAIL LLSRSLLGTD LTLNQGLVDQ LEPIVLGVIQ 120
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Protein Fasta Sequence


>IUUC-Ath-007289|E3,UBR-box|Arabidopsis thaliana
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Nucleotide Sequence
(Fasta)
CATCGAACTC TTCTTCTTTC GCCTCGCCAG AAATGGCAGA TGACTTGGCG AATCTCTGCC 60
GATTTCTCTT CGACGACACC GCCTTTCCCT CTTTGTCGTC TTCGGCATCT TCAGATCTCT 120
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Nucleotide Fasta Sequence


>IUUC-Ath-007289|E3,UBR-box|Arabidopsis thaliana
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Sequence Source Ensembl
Keyword

KW-0007--Acetylation
KW-0927--Auxin signaling pathway
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0217--Developmental protein
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR025704--E3_Ub_ligase_UBR4
IPR015943--WD40/YVTN_repeat-like_dom
IPR017986--WD40_repeat_dom
IPR003126--Znf_UBR
IPR000433--Znf_ZZ
PROSITE

PS51157--ZF_UBR
PS01357--ZF_ZZ_1
PS50135--ZF_ZZ_2
Pfam

PF13764--E3_UbLigase_R4
PF00569--ZZ
SMART

SM00396--ZnF_UBR1
SM00291--ZnF_ZZ
Gene Ontology

GO:0005829--C:cytosol
GO:0016021--C:integral component of membrane
GO:0016020--C:membrane
GO:0009506--C:plasmodesma
GO:0008270--F:zinc ion binding
GO:0009926--P:auxin polar transport
GO:0009734--P:auxin-activated signaling pathway
GO:0048281--P:inflorescence morphogenesis
GO:0010311--P:lateral root formation
GO:0009640--P:photomorphogenesis
GO:0009733--P:response to auxin
GO:0009620--P:response to fungus
GO:0048364--P:root development
GO:0009826--P:unidimensional cell growth
KEGG ath:AT3G02260
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000915 Aegilops tauschii 56.94 0.00e+00 5251.00
IUUC-Aml-001346 Ailuropoda melanoleuca 34.09 0.00e+00 854.00
IUUC-Atr-002587 Amborella trichopoda 55.61 0.00e+00 4129.00
IUUC-Apl-003678 Anas platyrhynchos 33.84 0.00e+00 846.00
IUUC-Aca-004517 Anolis carolinensis 41.59 7.00e-93 333.00
IUUC-Aly-006117 Arabidopsis lyrata 97.35 0.00e+00 9435.00
IUUC-Ame-011965 Astyanax mexicanus 28.89 3.00e-80 294.00
IUUC-Bta-012498 Bos taurus 33.95 0.00e+00 847.00
IUUC-Bci-013659 Botrytis cinerea 41.38 1.00e-06 48.10
IUUC-Bdi-014555 Brachypodium distachyon 57.69 0.00e+00 5231.00
IUUC-Bol-015522 Brassica oleracea 90.05 0.00e+00 8888.00
IUUC-Bra-017090 Brassica rapa 89.98 0.00e+00 8429.00
IUUC-Cel-018504 Caenorhabditis elegans 25.97 1.00e-47 186.00
IUUC-Cja-018983 Callithrix jacchus 34.17 0.00e+00 853.00
IUUC-Cfa-020612 Canis familiaris 34.07 0.00e+00 855.00
IUUC-Cpo-021700 Cavia porcellus 33.95 0.00e+00 852.00
IUUC-Cre-022861 Chlamydomonas reinhardtii 44.83 4.00e-05 42.40
IUUC-Csa-023771 Chlorocebus sabaeus 34.28 0.00e+00 856.00
IUUC-Cho-024474 Choloepus hoffmanni 38.55 2.00e-107 385.00
IUUC-Cin-025247 Ciona intestinalis 30.63 1.00e-86 314.00
IUUC-Csv-026255 Ciona savignyi 30.75 3.00e-90 325.00
IUUC-Cne-027045 Cryptococcus neoformans 35.21 2.00e-04 41.20
IUUC-Dre-028796 Danio rerio 33.45 0.00e+00 852.00
IUUC-Dno-030056 Dasypus novemcinctus 33.84 0.00e+00 847.00
IUUC-Dor-030711 Dipodomys ordii 35.52 0.00e+00 659.00
IUUC-Dme-032113 Drosophila melanogaster 30.75 0.00e+00 810.00
IUUC-Ete-032334 Echinops telfairi 34.45 0.00e+00 823.00
IUUC-Eca-033327 Equus caballus 34.17 0.00e+00 854.00
IUUC-Eeu-034698 Erinaceus europaeus 31.12 7.00e-64 241.00
IUUC-Fca-035430 Felis catus 33.74 0.00e+00 836.00
IUUC-Fal-037566 Ficedula albicollis 33.84 0.00e+00 851.00
IUUC-Gmo-038674 Gadus morhua 33.16 0.00e+00 829.00
IUUC-Gga-040641 Gallus gallus 33.76 0.00e+00 857.00
IUUC-Gac-041870 Gasterosteus aculeatus 31.29 0.00e+00 951.00
IUUC-Gma-042722 Glycine max 66.07 0.00e+00 6189.00
IUUC-Ggo-045360 Gorilla gorilla 34.17 0.00e+00 853.00
IUUC-Hsa-046955 Homo sapiens 34.17 0.00e+00 853.00
IUUC-Hvu-047255 Hordeum vulgare 57.34 0.00e+00 5234.00
IUUC-Itr-048714 Ictidomys tridecemlineatus 28.61 3.00e-85 310.00
IUUC-Lch-049893 Latimeria chalumnae 32.81 0.00e+00 801.00
IUUC-Lpe-050948 Leersia perrieri 56.81 0.00e+00 4910.00
IUUC-Loc-052019 Lepisosteus oculatus 30.36 0.00e+00 786.00
IUUC-Laf-054238 Loxodonta africana 34.07 0.00e+00 853.00
IUUC-Mcc-054905 Macaca mulatta 34.23 0.00e+00 855.00
IUUC-Meu-056297 Macropus eugenii 32.24 0.00e+00 780.00
IUUC-Mtr-058169 Medicago truncatula 65.54 0.00e+00 6288.00
IUUC-Mla-059147 Melampsora laricipopulina 36.00 1.00e-06 46.60
IUUC-Mga-059621 Meleagris gallopavo 32.12 0.00e+00 922.00
IUUC-Mmr-061395 Microcebus murinus 34.26 0.00e+00 798.00
IUUC-Mdo-063037 Monodelphis domestica 34.01 0.00e+00 865.00
IUUC-Mmu-063200 Mus musculus 33.93 0.00e+00 851.00
IUUC-Mac-065267 Musa acuminata 62.97 0.00e+00 3936.00
IUUC-Mpu-066639 Mustela putorius furo 33.86 0.00e+00 854.00
IUUC-Mlu-067172 Myotis lucifugus 32.37 0.00e+00 921.00
IUUC-Nle-069162 Nomascus leucogenys 34.11 0.00e+00 853.00
IUUC-Opr-070567 Ochotona princeps 33.44 1.00e-149 525.00
IUUC-Ont-072364 Oreochromis niloticus 33.59 0.00e+00 839.00
IUUC-Oan-072804 Ornithorhynchus anatinus 31.68 2.00e-138 486.00
IUUC-Ocu-074637 Oryctolagus cuniculus 34.11 0.00e+00 852.00
IUUC-Oba-075215 Oryza barthii 56.92 0.00e+00 4943.00
IUUC-Obr-076704 Oryza brachyantha 57.25 0.00e+00 5269.00
IUUC-Ogl-077593 Oryza glaberrima 55.48 0.00e+00 4204.00
IUUC-Ogu-078732 Oryza glumaepatula 56.93 0.00e+00 4952.00
IUUC-Oin-079805 Oryza indica 72.88 0.00e+00 2446.00
IUUC-Olo-080261 Oryza longistaminata 57.28 0.00e+00 4974.00
IUUC-Ome-081392 Oryza meridionalis 57.08 0.00e+00 5233.00
IUUC-Oni-082086 Oryza nivara 57.00 0.00e+00 4958.00
IUUC-Opu-083535 Oryza punctata 57.12 0.00e+00 4999.00
IUUC-Oru-084735 Oryza rufipogon 56.98 0.00e+00 4960.00
IUUC-Ola-086799 Oryzias latipes 33.51 0.00e+00 843.00
IUUC-Olu-087777 Ostreococcus lucimarinus 32.72 2.00e-110 394.00
IUUC-Oga-088126 Otolemur garnettii 33.29 1.00e-81 297.00
IUUC-Oar-090428 Ovis aries 33.68 0.00e+00 847.00
IUUC-Ptr-091407 Pan troglodytes 34.17 0.00e+00 853.00
IUUC-Pan-091777 Papio anubis 32.52 0.00e+00 927.00
IUUC-Psi-093587 Pelodiscus sinensis 31.49 0.00e+00 884.00
IUUC-Pma-094248 Petromyzon marinus 36.59 2.00e-10 61.20
IUUC-Ppa-095781 Physcomitrella patens 48.07 0.00e+00 4165.00
IUUC-Pfo-097449 Poecilia formosa 31.89 0.00e+00 845.00
IUUC-Pab-098450 Pongo abelii 34.17 0.00e+00 853.00
IUUC-Pop-100041 Populus trichocarpa 69.22 0.00e+00 6496.00
IUUC-Pca-100663 Procavia capensis 29.79 1.00e-102 370.00
IUUC-Ppe-101386 Prunus persica 68.28 0.00e+00 6448.00
IUUC-Pva-102701 Pteropus vampyrus 31.17 0.00e+00 841.00
IUUC-Rno-105367 Rattus norvegicus 32.28 0.00e+00 917.00
IUUC-Sha-107490 Sarcophilus harrisii 34.07 0.00e+00 867.00
IUUC-Ssl-108622 Sclerotinia sclerotiorum 41.38 2.00e-06 47.80
IUUC-Smo-109103 Selaginella moellendorffii 49.56 0.00e+00 4087.00
IUUC-Sit-110670 Setaria italica 57.78 0.00e+00 5154.00
IUUC-Sly-110952 Solanum lycopersicum 62.77 0.00e+00 5946.00
IUUC-Stu-112624 Solanum tuberosum 73.94 0.00e+00 2168.00
IUUC-Sar-113180 Sorex araneus 30.43 8.00e-133 469.00
IUUC-Sbi-114596 Sorghum bicolor 57.50 0.00e+00 5113.00
IUUC-Ssc-115377 Sus scrofa 34.26 0.00e+00 795.00
IUUC-Tgu-117330 Taeniopygia guttata 33.64 0.00e+00 860.00
IUUC-Tru-117635 Takifugu rubripes 32.05 0.00e+00 830.00
IUUC-Tsy-119551 Tarsius syrichta 35.39 2.00e-122 435.00
IUUC-Tni-119727 Tetraodon nigroviridis 32.19 0.00e+00 838.00
IUUC-Tca-121017 Theobroma cacao 69.95 0.00e+00 6709.00
IUUC-Tae-122892 Triticum aestivum 60.36 3.00e-126 444.00
IUUC-Tur-126292 Triticum urartu 56.94 0.00e+00 5253.00
IUUC-Tbe-127560 Tupaia belangeri 40.30 6.00e-11 62.40
IUUC-Ttr-128332 Tursiops truncatus 34.31 1.00e-136 483.00
IUUC-Vpa-130615 Vicugna pacos 25.17 2.00e-42 169.00
IUUC-Vvi-131435 Vitis vinifera 67.79 0.00e+00 6362.00
IUUC-Xtr-132130 Xenopus tropicalis 31.58 3.00e-151 530.00
IUUC-Xma-133859 Xiphophorus maculatus 31.74 0.00e+00 847.00
Created Date 25-Jun-2017

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