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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Rno-106130
UUCD1 version UUC-RaN-00551
Ensembl Protein ID ENSRNOP00000069487.1
UniProt Accession A0A0G2JVH5; A0A0G2JVH5_RAT
Genbank Protein ID ENSRNOP00000069487
Protein Name Helicase-like transcription factor
Genbank Nucleotide ID AC111684
Gene Name Hltf
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000000082.7 ENSRNOT00000064828.3 ENSRNOP00000060341.1
ENSRNOG00000000082.7 ENSRNOT00000090912.1 ENSRNOP00000069487.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
RAID2
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/RING/RING 31.38 4.00e-78 288.00 IUUC-Sce-106396
E3 activity/RING/RING 33.33 1.00e-79 292.00 IUUC-Spo-108026
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MSWKFKRDSV WKYSQSAQYG AHENIPRLSY PPFFPRFEFQ DIIPPDDFQT SDEELDLVLF 60
GTMRGQVVGI RYYTGVVNNN EMVALEREPN NPYDKNAIKV NNVNGNQVGH LKRDLAAALA 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-106130|E3,RING|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TCCTCACATT GTTGCAGGAA GGAGTGGGCG TAGACATGTC TCCCGGGGAG CTTGTGGCCT 60
CCAGATTCTG ACTTGCTTTC CGGCCCCTGG GCCGCTACAC CTTGAGGAGC TTTTTCAGAC 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-106130|E3,RING|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
Interpro

IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR014905--HIRAN
IPR030065--HLTF
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS
PROSITE

PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS00518--ZF_RING_1
PS50089--ZF_RING_2
Pfam

PF00271--Helicase_C
PF08797--HIRAN
PF00176--SNF2_N
SMART

SM00487--DEXDc
SM00490--HELICc
SM00910--HIRAN
SM00184--RING
Gene Ontology

GO:0016020--C:membrane
GO:0005654--C:nucleoplasm
GO:0005524--F:ATP binding
GO:0016887--F:ATPase activity
GO:0003723--F:RNA binding
GO:0000978--F:RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077--F:transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0006301--P:postreplication repair
GO:0000209--P:protein polyubiquitination
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000819 Aegilops tauschii 37.95 5.00e-103 369.00
IUUC-Aml-001237 Ailuropoda melanoleuca 83.76 0.00e+00 1622.00
IUUC-Atr-003058 Amborella trichopoda 38.30 8.00e-108 385.00
IUUC-Aca-004994 Anolis carolinensis 63.34 0.00e+00 1178.00
IUUC-Aly-005898 Arabidopsis lyrata 42.78 1.00e-121 430.00
IUUC-Ath-007559 Arabidopsis thaliana 42.59 5.00e-122 432.00
IUUC-Ago-007997 Ashbya gossypii 33.97 2.00e-76 280.00
IUUC-Acl-008053 Aspergillus clavatus 35.12 2.00e-82 300.00
IUUC-Afl-008697 Aspergillus flavus 35.47 2.00e-84 307.00
IUUC-Afu-008767 Aspergillus fumigatus 35.96 3.00e-89 323.00
IUUC-Ani-009435 Aspergillus nidulans 35.75 1.00e-88 321.00
IUUC-Ang-009635 Aspergillus niger 36.57 7.00e-86 311.00
IUUC-Aor-010130 Aspergillus oryzae 35.71 2.00e-86 313.00
IUUC-Ate-010582 Aspergillus terreus 33.57 3.00e-78 286.00
IUUC-Ame-011743 Astyanax mexicanus 60.11 0.00e+00 655.00
IUUC-Bgr-012147 Blumeria graminis 34.31 6.00e-85 309.00
IUUC-Bta-013391 Bos taurus 82.36 0.00e+00 1628.00
IUUC-Bci-013741 Botrytis cinerea 34.48 3.00e-84 307.00
IUUC-Bdi-014267 Brachypodium distachyon 41.35 5.00e-119 422.00
IUUC-Bol-016075 Brassica oleracea 42.23 2.00e-123 436.00
IUUC-Bra-017057 Brassica rapa 42.86 1.00e-122 434.00
IUUC-Cja-019685 Callithrix jacchus 82.56 0.00e+00 1672.00
IUUC-Cfa-020485 Canis familiaris 83.52 0.00e+00 1620.00
IUUC-Cpo-021361 Cavia porcellus 84.24 0.00e+00 1014.00
IUUC-Cre-022824 Chlamydomonas reinhardtii 29.71 5.00e-65 243.00
IUUC-Csa-023894 Chlorocebus sabaeus 83.35 0.00e+00 1646.00
IUUC-Cho-024891 Choloepus hoffmanni 88.89 0.00e+00 694.00
IUUC-Csv-026168 Ciona savignyi 29.55 1.00e-52 201.00
IUUC-Cgl-026606 Colletotrichum gloeosporioides 35.21 4.00e-88 319.00
IUUC-Cne-026829 Cryptococcus neoformans 36.72 6.00e-94 338.00
IUUC-Cme-027110 Cyanidioschyzon merolae 33.33 1.00e-89 324.00
IUUC-Dre-027867 Danio rerio 61.60 0.00e+00 713.00
IUUC-Dno-029517 Dasypus novemcinctus 82.56 0.00e+00 1599.00
IUUC-Dor-030590 Dipodomys ordii 76.01 4.00e-176 612.00
IUUC-Dse-031471 Dothistroma septosporum 31.01 3.00e-78 286.00
IUUC-Dme-031815 Drosophila melanogaster 30.96 1.00e-54 208.00
IUUC-Ete-032421 Echinops telfairi 67.84 0.00e+00 845.00
IUUC-Eca-034058 Equus caballus 83.35 0.00e+00 1600.00
IUUC-Eeu-034597 Erinaceus europaeus 67.00 0.00e+00 1231.00
IUUC-Fca-035390 Felis catus 83.91 0.00e+00 1587.00
IUUC-Fox-037751 Fusarium oxysporum 37.43 1.00e-85 311.00
IUUC-Fso-038179 Fusarium solani 33.61 8.00e-87 315.00
IUUC-Gmo-038544 Gadus morhua 55.50 0.00e+00 668.00
IUUC-Ggr-039735 Gaeumannomyces graminis 32.28 5.00e-75 276.00
IUUC-Gac-042401 Gasterosteus aculeatus 55.63 0.00e+00 692.00
IUUC-Gma-044315 Glycine max 38.92 9.00e-102 365.00
IUUC-Ggo-045628 Gorilla gorilla 82.54 0.00e+00 1624.00
IUUC-Hsa-045930 Homo sapiens 83.05 0.00e+00 1645.00
IUUC-Hvu-047747 Hordeum vulgare 38.05 2.00e-108 386.00
IUUC-Itr-048493 Ictidomys tridecemlineatus 83.71 0.00e+00 1658.00
IUUC-Kpa-049087 Komagataella pastoris 34.45 1.00e-82 301.00
IUUC-Lch-050617 Latimeria chalumnae 58.47 0.00e+00 1055.00
IUUC-Lpe-051724 Leersia perrieri 41.94 9.00e-123 434.00
IUUC-Loc-052785 Lepisosteus oculatus 63.23 0.00e+00 756.00
IUUC-Lma-052956 Leptosphaeria maculans 31.88 3.00e-79 290.00
IUUC-Laf-054309 Loxodonta africana 80.73 0.00e+00 1513.00
IUUC-Mcc-055493 Macaca mulatta 83.00 0.00e+00 1625.00
IUUC-Meu-056270 Macropus eugenii 73.33 0.00e+00 855.00
IUUC-Mor-056943 Magnaporthe oryzae 36.75 3.00e-89 323.00
IUUC-Mpo-057407 Magnaporthe poae 32.67 6.00e-79 289.00
IUUC-Mtr-058172 Medicago truncatula 42.47 8.00e-116 411.00
IUUC-Mla-059170 Melampsora laricipopulina 31.59 5.00e-74 272.00
IUUC-Mvi-060365 Microbotryum violaceum 34.63 4.00e-84 306.00
IUUC-Mmr-061043 Microcebus murinus 81.73 0.00e+00 1517.00
IUUC-Mdo-062919 Monodelphis domestica 74.83 0.00e+00 1377.00
IUUC-Mmu-064338 Mus musculus 88.66 0.00e+00 1806.00
IUUC-Mac-065666 Musa acuminata 36.36 2.00e-87 317.00
IUUC-Mpu-066781 Mustela putorius furo 83.81 0.00e+00 1624.00
IUUC-Mlu-068076 Myotis lucifugus 81.80 0.00e+00 1579.00
IUUC-Nfi-068386 Neosartorya fischeri 35.42 2.00e-86 313.00
IUUC-Ncr-068858 Neurospora crassa 37.20 7.00e-91 328.00
IUUC-Nle-069947 Nomascus leucogenys 82.95 0.00e+00 1640.00
IUUC-Opr-070388 Ochotona princeps 74.95 0.00e+00 1488.00
IUUC-Ont-071782 Oreochromis niloticus 60.89 0.00e+00 668.00
IUUC-Oan-073331 Ornithorhynchus anatinus 74.10 0.00e+00 1233.00
IUUC-Ocu-074705 Oryctolagus cuniculus 83.90 0.00e+00 1598.00
IUUC-Oba-075881 Oryza barthii 41.83 3.00e-121 429.00
IUUC-Obr-076344 Oryza brachyantha 41.45 4.00e-118 418.00
IUUC-Ogl-076957 Oryza glaberrima 41.83 3.00e-121 429.00
IUUC-Ogu-078648 Oryza glumaepatula 41.25 1.00e-116 413.00
IUUC-Oin-079449 Oryza indica 41.28 2.00e-117 416.00
IUUC-Olo-080721 Oryza longistaminata 41.10 3.00e-117 416.00
IUUC-Ome-081579 Oryza meridionalis 40.77 1.00e-116 414.00
IUUC-Oni-083054 Oryza nivara 41.28 2.00e-117 416.00
IUUC-Opu-083706 Oryza punctata 41.32 8.00e-118 417.00
IUUC-Oru-085259 Oryza rufipogon 41.28 2.00e-117 416.00
IUUC-Osa-085568 Oryza sativa 41.55 2.00e-104 373.00
IUUC-Ola-086830 Oryzias latipes 51.04 0.00e+00 900.00
IUUC-Olu-087669 Ostreococcus lucimarinus 28.54 6.00e-55 209.00
IUUC-Oga-088120 Otolemur garnettii 78.56 0.00e+00 1447.00
IUUC-Oar-089293 Ovis aries 82.11 0.00e+00 1630.00
IUUC-Ptr-091418 Pan troglodytes 82.85 0.00e+00 1640.00
IUUC-Pan-092579 Papio anubis 80.98 0.00e+00 1209.00
IUUC-Psi-093626 Pelodiscus sinensis 68.25 0.00e+00 1142.00
IUUC-Pno-094841 Phaeosphaeria nodorum 38.95 7.00e-89 322.00
IUUC-Ppa-095291 Physcomitrella patens 47.16 1.00e-144 507.00
IUUC-Pfo-096540 Poecilia formosa 58.70 0.00e+00 680.00
IUUC-Pab-098010 Pongo abelii 83.15 0.00e+00 1643.00
IUUC-Pop-099320 Populus trichocarpa 36.69 3.00e-108 386.00
IUUC-Pca-100648 Procavia capensis 72.25 0.00e+00 1340.00
IUUC-Ppe-102077 Prunus persica 42.86 2.00e-107 383.00
IUUC-Pva-102896 Pteropus vampyrus 83.43 0.00e+00 829.00
IUUC-Pgr-103403 Puccinia graminis 31.70 4.00e-74 273.00
IUUC-Ptt-103966 Puccinia triticina 31.93 4.00e-73 270.00
IUUC-Pte-104242 Pyrenophora teres 32.72 3.00e-81 297.00
IUUC-Pyt-104728 Pyrenophora triticirepentis 32.39 1.00e-78 288.00
IUUC-Sce-106396 Saccharomyces cerevisiae 31.82 1.00e-74 275.00
IUUC-Sha-107221 Sarcophilus harrisii 75.67 0.00e+00 1368.00
IUUC-Sja-107985 Schizosaccharomyces japonicus 33.97 1.00e-85 311.00
IUUC-Spo-108026 Schizosaccharomyces pombe 33.33 3.00e-81 296.00
IUUC-Ssl-108388 Sclerotinia sclerotiorum 34.82 2.00e-86 313.00
IUUC-Smo-109629 Selaginella moellendorffii 44.26 3.00e-130 459.00
IUUC-Sit-109770 Setaria italica 42.44 2.00e-120 426.00
IUUC-Sly-111908 Solanum lycopersicum 38.57 1.00e-107 384.00
IUUC-Stu-112600 Solanum tuberosum 37.88 8.00e-108 385.00
IUUC-Sar-113719 Sorex araneus 83.07 0.00e+00 1520.00
IUUC-Sbi-113927 Sorghum bicolor 38.01 4.00e-104 372.00
IUUC-Sre-114938 Sporisorium reilianum 29.48 4.00e-75 276.00
IUUC-Ssc-116186 Sus scrofa 83.88 0.00e+00 1663.00
IUUC-Tru-117768 Takifugu rubripes 50.83 0.00e+00 906.00
IUUC-Tsy-118957 Tarsius syrichta 77.13 0.00e+00 1464.00
IUUC-Tni-120618 Tetraodon nigroviridis 51.75 0.00e+00 951.00
IUUC-Tca-121146 Theobroma cacao 37.96 4.00e-109 389.00
IUUC-Tre-121896 Trichoderma reesei 34.87 1.00e-92 334.00
IUUC-Tvi-122597 Trichoderma virens 33.96 5.00e-88 319.00
IUUC-Tae-123773 Triticum aestivum 41.95 3.00e-108 386.00
IUUC-Tur-125999 Triticum urartu 38.41 9.00e-109 388.00
IUUC-Tme-126953 Tuber melanosporum 34.75 2.00e-87 317.00
IUUC-Tbe-127612 Tupaia belangeri 72.35 0.00e+00 672.00
IUUC-Ttr-128243 Tursiops truncatus 78.03 0.00e+00 1158.00
IUUC-Uma-129441 Ustilago maydis 29.67 1.00e-75 278.00
IUUC-Vda-129933 Verticillium dahliae 36.52 4.00e-82 299.00
IUUC-Vpa-130672 Vicugna pacos 83.54 0.00e+00 1513.00
IUUC-Vvi-131204 Vitis vinifera 43.45 7.00e-125 441.00
IUUC-Xtr-132730 Xenopus tropicalis 59.31 0.00e+00 1183.00
IUUC-Xma-133384 Xiphophorus maculatus 60.00 0.00e+00 691.00
IUUC-Yli-134350 Yarrowia lipolytica 31.18 1.00e-73 271.00
IUUC-Zma-134966 Zea mays 43.14 2.00e-128 453.00
Created Date 25-Jun-2017

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