iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sly-111042

Ensembl Protein ID

Solyc12g088540.1.1

UniProt Accession

K4DGS5; K4DGS5_SOLLC

Protein Name

Uncharacterized protein

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Solyc12g088540.1	Solyc12g088540.1.1	Solyc12g088540.1.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.90e-54	178.9	332	370
UBD/Beta-Prp	1.10e-68	232.3	292	498

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gH+++++++++   + ll+s+sdD t+k+W+++++v+l+
   Q: 332  GHQNEINAIDWdpLGSLLASCSDDTTVKIWSMKQDVCLH 370
           8**********863369********************97 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvls 99
           h++++ +v++ ++++ +at+s+d++i v +v + k ++++sgh++e++a++++p g++l+++s+D t+k+w++++  c+h +++h++++++
   Q: 292  HSGQLLDVAW-RNNDSFATSSADSMIYVCKVGENKPVKKFSGHQNEINAIDWDPLGSLLASCSDDTTVKIWSMKQDVCLHDFREHSKEIYT 381
           5556666777.44445888888888888888888888888888888888888888888888888888888888888888888888888888 PP
   S: 100  lsfsp........sg.dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtd 181
           +++sp        ++   l+s+s d t+++wd+++g  l+  ++ h++ + +++++p+g +l+sGslD+++++W++k +kl+rt  g  ++
   Q: 382  IKWSPtgagtsnpNQqLLLASASFDTTVKLWDVHQGRLLH-SFNSHREPIYSIAFSPNGEYLASGSLDKCMNIWSVKEAKLVRTYNG--DG 469
           8888866666655332567888888888888888888888.8888888888888888888888888888888888888888888876..88 PP
   S: 182  svyslsfdsngkelvsgsldgtvklwdlq 210
            +  + ++++g+ ++++  +++v ++dl+
   Q: 470  GIFEVCWNKKGNKVAACFANKKVYVFDLR 498
           88888888888888888888888888875 PP

Organism

Solanum lycopersicum

Protein Sequence
(Fasta)

MAFLTSEFLN FIVFRYLFES GFTHAAFNFG YEAGLNTSTI NGHLVPPGGL VQLVQKGIMY 60
LELETNFSND DTDMNEDFKL LEPMDLITKS VDELRKIIKE KKEKAQKKKL RGKGKANADH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTTTTT TAACCTCTGA GTTCCTCAAT TTCATTGTTT TTCGCTATCT CTTTGAATCA 60
GGTAATTTAA TTCTCATCTT CAGAACTTGT TATATCTATC CAATTTTAAT TGATGTTGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000118--C:histone deacetylase complex
GO:0003714--F:transcription corepressor activity
GO:0016575--P:histone deacetylation
GO:0006357--P:regulation of transcription from RNA polymerase II promoter

KEGG

sly:101256365

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001450	Ailuropoda melanoleuca	51.58	1.00e-151	528.00
IUUC-Apl-003232	Anas platyrhynchos	50.38	5.00e-150	523.00
IUUC-Aca-004611	Anolis carolinensis	50.78	4.00e-144	503.00
IUUC-Ago-007869	Ashbya gossypii	26.80	1.00e-39	156.00
IUUC-Ame-011601	Astyanax mexicanus	50.88	5.00e-145	506.00
IUUC-Bta-012418	Bos taurus	50.88	8.00e-150	522.00
IUUC-Cja-018832	Callithrix jacchus	50.88	4.00e-143	500.00
IUUC-Cfa-020029	Canis familiaris	50.88	8.00e-143	499.00
IUUC-Cpo-022080	Cavia porcellus	47.95	8.00e-134	469.00
IUUC-Csa-024075	Chlorocebus sabaeus	50.88	8.00e-143	499.00
IUUC-Cin-025704	Ciona intestinalis	47.95	7.00e-146	509.00
IUUC-Csv-026257	Ciona savignyi	46.99	2.00e-141	494.00
IUUC-Cne-026946	Cryptococcus neoformans	30.43	3.00e-25	109.00
IUUC-Cme-027258	Cyanidioschyzon merolae	39.12	1.00e-108	386.00
IUUC-Dre-028075	Danio rerio	50.78	4.00e-144	503.00
IUUC-Dno-029196	Dasypus novemcinctus	50.88	9.00e-144	502.00
IUUC-Dme-031939	Drosophila melanogaster	60.22	8.00e-125	440.00
IUUC-Ete-032822	Echinops telfairi	44.51	1.00e-121	429.00
IUUC-Eca-033897	Equus caballus	50.29	1.00e-149	522.00
IUUC-Eeu-034952	Erinaceus europaeus	45.87	1.00e-121	429.00
IUUC-Fca-035734	Felis catus	50.88	2.00e-143	501.00
IUUC-Fal-037185	Ficedula albicollis	50.58	6.00e-144	503.00
IUUC-Gmo-038870	Gadus morhua	51.28	1.00e-150	525.00
IUUC-Gga-041161	Gallus gallus	50.58	3.00e-144	504.00
IUUC-Gac-041770	Gasterosteus aculeatus	52.27	1.00e-153	535.00
IUUC-Ggo-044882	Gorilla gorilla	50.88	8.00e-143	499.00
IUUC-Hsa-046488	Homo sapiens	50.88	8.00e-143	499.00
IUUC-Kpa-049338	Komagataella pastoris	28.85	2.00e-32	132.00
IUUC-Lch-050535	Latimeria chalumnae	51.37	1.00e-152	532.00
IUUC-Loc-052030	Lepisosteus oculatus	50.87	2.00e-150	524.00
IUUC-Laf-054280	Loxodonta africana	50.29	9.00e-150	522.00
IUUC-Mcc-055203	Macaca mulatta	50.88	9.00e-143	499.00
IUUC-Mga-059660	Meleagris gallopavo	50.58	3.00e-144	504.00
IUUC-Mvi-060557	Microbotryum violaceum	36.57	2.00e-70	259.00
IUUC-Mmr-061286	Microcebus murinus	49.91	5.00e-149	520.00
IUUC-Mdo-062078	Monodelphis domestica	50.39	5.00e-143	500.00
IUUC-Mmu-063603	Mus musculus	51.07	1.00e-144	506.00
IUUC-Mpu-066741	Mustela putorius furo	50.88	8.00e-143	499.00
IUUC-Mlu-068152	Myotis lucifugus	50.98	8.00e-145	506.00
IUUC-Nle-069229	Nomascus leucogenys	50.88	8.00e-143	499.00
IUUC-Opr-070277	Ochotona princeps	43.39	4.00e-111	394.00
IUUC-Ont-071569	Oreochromis niloticus	51.66	4.00e-153	533.00
IUUC-Oan-073562	Ornithorhynchus anatinus	50.57	2.00e-150	525.00
IUUC-Ocu-074280	Oryctolagus cuniculus	49.81	4.00e-143	500.00
IUUC-Ola-087365	Oryzias latipes	50.97	9.00e-151	526.00
IUUC-Olu-087589	Ostreococcus lucimarinus	52.80	1.00e-158	552.00
IUUC-Oga-088357	Otolemur garnettii	49.02	3.00e-134	471.00
IUUC-Oar-089506	Ovis aries	52.47	3.00e-153	534.00
IUUC-Ptr-091532	Pan troglodytes	50.88	8.00e-143	499.00
IUUC-Pan-091927	Papio anubis	50.88	8.00e-143	499.00
IUUC-Psi-093941	Pelodiscus sinensis	49.24	1.00e-141	496.00
IUUC-Pma-094105	Petromyzon marinus	43.86	1.00e-55	209.00
IUUC-Pfo-096158	Poecilia formosa	50.78	3.00e-150	524.00
IUUC-Pab-098705	Pongo abelii	50.88	8.00e-143	499.00
IUUC-Pca-100256	Procavia capensis	49.90	5.00e-141	493.00
IUUC-Pva-102616	Pteropus vampyrus	50.50	3.00e-142	497.00
IUUC-Rno-105411	Rattus norvegicus	51.07	1.00e-144	505.00
IUUC-Sce-106132	Saccharomyces cerevisiae	25.45	8.00e-43	167.00
IUUC-Sha-107326	Sarcophilus harrisii	51.46	3.00e-152	530.00
IUUC-Sar-112971	Sorex araneus	45.49	4.00e-126	444.00
IUUC-Ssc-115646	Sus scrofa	50.19	1.00e-149	522.00
IUUC-Tgu-116898	Taeniopygia guttata	50.57	1.00e-150	525.00
IUUC-Tru-118581	Takifugu rubripes	50.97	2.00e-150	525.00
IUUC-Tsy-119424	Tarsius syrichta	41.78	3.00e-103	368.00
IUUC-Tni-120861	Tetraodon nigroviridis	52.30	8.00e-153	532.00
IUUC-Tre-122088	Trichoderma reesei	30.93	2.00e-35	142.00
IUUC-Tbe-127665	Tupaia belangeri	43.84	9.00e-118	416.00
IUUC-Ttr-128826	Tursiops truncatus	50.10	2.00e-135	474.00
IUUC-Vpa-130768	Vicugna pacos	50.49	9.00e-141	493.00
IUUC-Xtr-132842	Xenopus tropicalis	47.62	3.00e-135	474.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence