iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Ssc-115911

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CU640885

Gene Name

RNF4

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000008690.2	ENSSSCT00000009507.2	ENSSSCP00000009263.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	1.00e-08	35.8	132	177

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf......kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iC++ +       +  +++ CgHvf+ +Cl       +s +++ +CP+Cr
   Q: 132  CPICMDGYseivqnGRLIVSTECGHVFCSQCL------RDSLKNANTCPTCR 177
           ********55553322255788*********9......4559*********8 PP

Organism

Sus scrofa

Protein Sequence
(Fasta)

MSTRKRRGGA VNSRQAQKRT RESPSTPEMA LEAEPIELVE SAGDEIVDLT CESLEPVVVD 60
LTHNDSVVIV EERRRPRRNA RRLRQDHADS CVVSSDDEEL SRDRDVYVTT QTPRNAREEA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAGCGGAAGG GGGTCGCTGC TGGGGCGGCG GCGTCTCGCT TGAGGGCTTC TCCTCAGCGG 60
CTTCCGGGGG TGCTTCCTCG CTCGGGTGCG TCAGCGGCAG CGCCTGCCGA GCCTCAGCAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005737--C:cytoplasm
GO:0016605--C:PML body
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0016567--P:protein ubiquitination
GO:0090234--P:regulation of kinetochore assembly
GO:0090169--P:regulation of spindle assembly
GO:0046685--P:response to arsenic-containing substance

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000620	Aegilops tauschii	39.34	1.00e-10	59.70
IUUC-Aml-002206	Ailuropoda melanoleuca	96.26	3.00e-86	310.00
IUUC-Atr-002771	Amborella trichopoda	32.88	1.00e-09	55.80
IUUC-Apl-004120	Anas platyrhynchos	72.96	3.00e-73	267.00
IUUC-Aca-004236	Anolis carolinensis	63.68	2.00e-61	227.00
IUUC-Ame-011555	Astyanax mexicanus	52.17	9.00e-38	149.00
IUUC-Bta-012913	Bos taurus	88.95	4.00e-87	313.00
IUUC-Bdi-014655	Brachypodium distachyon	42.62	9.00e-11	60.10
IUUC-Bol-016418	Brassica oleracea	37.70	4.00e-09	55.10
IUUC-Bra-016890	Brassica rapa	36.84	8.00e-08	50.10
IUUC-Cja-019151	Callithrix jacchus	91.62	2.00e-83	300.00
IUUC-Cfa-020868	Canis familiaris	93.16	8.00e-83	298.00
IUUC-Cpo-022249	Cavia porcellus	87.17	5.00e-73	266.00
IUUC-Csa-024125	Chlorocebus sabaeus	92.63	1.00e-85	308.00
IUUC-Cin-025749	Ciona intestinalis	40.98	1.00e-13	69.70
IUUC-Csv-026318	Ciona savignyi	40.98	4.00e-13	67.40
IUUC-Dre-028145	Danio rerio	42.61	3.00e-33	134.00
IUUC-Dno-029605	Dasypus novemcinctus	91.05	7.00e-92	328.00
IUUC-Dor-030898	Dipodomys ordii	90.00	2.00e-87	314.00
IUUC-Dme-032177	Drosophila melanogaster	42.37	1.00e-10	60.50
IUUC-Ete-032694	Echinops telfairi	85.56	1.00e-72	264.00
IUUC-Eca-033443	Equus caballus	96.84	3.00e-88	316.00
IUUC-Eeu-034603	Erinaceus europaeus	95.15	3.00e-56	209.00
IUUC-Fca-035507	Felis catus	94.12	3.00e-82	296.00
IUUC-Fal-037382	Ficedula albicollis	71.43	3.00e-66	243.00
IUUC-Gmo-038960	Gadus morhua	71.43	4.00e-19	86.30
IUUC-Gga-040493	Gallus gallus	68.04	8.00e-69	252.00
IUUC-Gac-042194	Gasterosteus aculeatus	45.51	2.00e-35	141.00
IUUC-Ggo-044726	Gorilla gorilla	94.21	1.00e-86	311.00
IUUC-Hsa-046212	Homo sapiens	94.21	1.00e-86	311.00
IUUC-Hvu-047337	Hordeum vulgare	37.70	1.00e-10	59.70
IUUC-Itr-047892	Ictidomys tridecemlineatus	93.58	2.00e-83	301.00
IUUC-Lpe-050920	Leersia perrieri	34.57	2.00e-11	62.40
IUUC-Loc-051907	Lepisosteus oculatus	46.99	4.00e-36	143.00
IUUC-Laf-054145	Loxodonta africana	90.91	9.00e-80	288.00
IUUC-Mcc-055689	Macaca mulatta	93.16	1.00e-85	308.00
IUUC-Meu-056654	Macropus eugenii	47.59	1.00e-40	158.00
IUUC-Mtr-058314	Medicago truncatula	45.45	1.00e-10	58.90
IUUC-Mla-058874	Melampsora laricipopulina	35.85	1.00e-04	41.20
IUUC-Mga-059303	Meleagris gallopavo	71.43	2.00e-72	264.00
IUUC-Mmr-061355	Microcebus murinus	93.16	3.00e-85	306.00
IUUC-Mdo-062968	Monodelphis domestica	67.20	7.00e-67	245.00
IUUC-Mmu-064421	Mus musculus	89.84	3.00e-90	323.00
IUUC-Mac-064573	Musa acuminata	31.68	2.00e-12	65.90
IUUC-Mpu-066522	Mustela putorius furo	95.72	1.00e-85	308.00
IUUC-Mlu-067065	Myotis lucifugus	90.37	4.00e-81	293.00
IUUC-Nle-069198	Nomascus leucogenys	92.63	3.00e-85	306.00
IUUC-Opr-071141	Ochotona princeps	86.63	4.00e-85	306.00
IUUC-Oan-073341	Ornithorhynchus anatinus	68.71	1.00e-36	144.00
IUUC-Ocu-073787	Oryctolagus cuniculus	91.98	7.00e-92	328.00
IUUC-Oba-075460	Oryza barthii	40.32	4.00e-11	61.20
IUUC-Obr-076349	Oryza brachyantha	33.75	4.00e-10	58.20
IUUC-Ogl-077094	Oryza glaberrima	37.97	1.00e-12	66.20
IUUC-Ogu-078677	Oryza glumaepatula	40.32	3.00e-11	61.60
IUUC-Oin-079992	Oryza indica	37.97	1.00e-12	66.20
IUUC-Olo-080257	Oryza longistaminata	41.94	2.00e-11	62.00
IUUC-Ome-081943	Oryza meridionalis	37.97	1.00e-12	67.00
IUUC-Oni-082671	Oryza nivara	40.32	4.00e-11	61.20
IUUC-Opu-083644	Oryza punctata	40.32	6.00e-11	60.80
IUUC-Oru-084650	Oryza rufipogon	40.32	4.00e-11	61.20
IUUC-Osa-086110	Oryza sativa	37.97	1.00e-12	66.20
IUUC-Ola-086970	Oryzias latipes	43.37	2.00e-34	137.00
IUUC-Olu-087634	Ostreococcus lucimarinus	37.29	2.00e-10	58.50
IUUC-Oga-088242	Otolemur garnettii	91.98	1.00e-91	328.00
IUUC-Oar-089469	Ovis aries	90.91	2.00e-91	327.00
IUUC-Ptr-091254	Pan troglodytes	88.42	2.00e-79	287.00
IUUC-Pan-092776	Papio anubis	93.16	1.00e-85	308.00
IUUC-Psi-093929	Pelodiscus sinensis	71.07	7.00e-69	252.00
IUUC-Pma-094118	Petromyzon marinus	47.13	1.00e-20	90.50
IUUC-Ppa-095567	Physcomitrella patens	44.26	2.00e-11	62.40
IUUC-Pfo-097412	Poecilia formosa	47.20	6.00e-34	136.00
IUUC-Pab-098424	Pongo abelii	93.68	4.00e-86	310.00
IUUC-Pop-099483	Populus trichocarpa	37.10	5.00e-09	53.90
IUUC-Pca-100463	Procavia capensis	86.52	5.00e-50	189.00
IUUC-Ppe-101755	Prunus persica	38.71	2.00e-09	54.70
IUUC-Pva-102594	Pteropus vampyrus	92.20	2.00e-62	230.00
IUUC-Rno-105460	Rattus norvegicus	88.89	4.00e-80	290.00
IUUC-Sha-107487	Sarcophilus harrisii	72.49	3.00e-69	253.00
IUUC-Sit-109959	Setaria italica	36.07	3.00e-05	42.40
IUUC-Stu-112694	Solanum tuberosum	39.06	3.00e-09	54.70
IUUC-Sar-113601	Sorex araneus	89.84	7.00e-80	289.00
IUUC-Sbi-114398	Sorghum bicolor	36.07	8.00e-05	40.40
IUUC-Tgu-117264	Taeniopygia guttata	70.90	5.00e-63	233.00
IUUC-Tru-117663	Takifugu rubripes	48.43	4.00e-36	143.00
IUUC-Tsy-118883	Tarsius syrichta	87.84	9.00e-67	244.00
IUUC-Tae-123990	Triticum aestivum	37.10	1.00e-06	45.80
IUUC-Tur-126408	Triticum urartu	39.34	1.00e-10	59.70
IUUC-Ttr-128950	Tursiops truncatus	66.84	7.00e-67	246.00
IUUC-Vvi-130833	Vitis vinifera	40.32	3.00e-10	58.50
IUUC-Xtr-132879	Xenopus tropicalis	60.39	4.00e-40	156.00
IUUC-Xma-133319	Xiphophorus maculatus	46.26	2.00e-31	127.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence