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Tag Content
iUUCD ID IUUC-Xtr-132679
Ensembl Protein ID ENSXETP00000012666.3
UniProt Accession Q5BKM5; Q5BKM5_XENTR
Genbank Protein ID AAH91020.1
Protein Name RAD23 homolog B, nucleotide excision repair protein; Rad23b protein
Genbank Nucleotide ID AAMC01028834
Gene Name rad23b
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSXETG00000005751.3 ENSXETT00000012666.3 ENSXETP00000012666.3
ENSXETG00000005751.3 ENSXETT00000012665.3 ENSXETP00000012665.3
Status Unreviewed
Classification
Family E-Value Score Start End
UBD/Alpha-Helix/UBA 2.10e-19 69.2 193 230
ULD/UDP/UBQ/UBQ_PIM 2.90e-25 88.2 1 78
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   UBD/Alpha-Helix/UBA
   S: 3    dedkleqlveMGFdreealqaLraannnleaAveyLld 40
           +e ++ ++++MG++re+++ aLra++nn+++AveyLl 
   Q: 193  YENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLM 230
           5789********************************95 PP
   

   ULD/UDP/UBQ/UBQ_PIM
   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           m++t+ktl++++f+++++ ++tv++lKeki+ e+g   +p++ qkLIyaGkiL+Ddt L+e++i+++++v+++v+k+k
   Q: 1    MQITLKTLQQQTFKIDIDGEETVKALKEKIELEKGkdaFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78
           99*************************************************************************987 PP
   
Organism Xenopus tropicalis
Protein Sequence
(Fasta)
MQITLKTLQQ QTFKIDIDGE ETVKALKEKI ELEKGKDAFP VAGQKLIYAG KILNDDTALK 60
EYKIDEKNFV VVMVTKPKGA ACSSTPTPAA SQPASAAAPA PASPPLTYTP IARQNAPIPL 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Xtr-132679|UBD,UBA;ULD,UBQ_PIM|Xenopus tropicalis
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CGCGCGTCTC CAGTCAGCGG AGTCACGATG GCGGCGGACA GGCCGTACTA ATGAGACAGC 60
GAAATAAGCG CTGGACACTG TACTTCATAG CCGTACATTT AGCGATCGGC GGACTGTAGA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Xtr-132679|UBD,UBA;ULD,UBQ_PIM|Xenopus tropicalis
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd
PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2
Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding
PRINTS

PR01839--RAD23PROTEIN
SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ
Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
KEGG xtr:594966
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000126 Aegilops tauschii 36.84 2.00e-19 90.10
IUUC-Aml-001195 Ailuropoda melanoleuca 80.00 1.00e-78 286.00
IUUC-Atr-003116 Amborella trichopoda 34.63 3.00e-29 122.00
IUUC-Apl-003371 Anas platyrhynchos 77.34 6.00e-86 310.00
IUUC-Aca-004599 Anolis carolinensis 74.48 7.00e-83 300.00
IUUC-Aly-005498 Arabidopsis lyrata 38.80 6.00e-39 154.00
IUUC-Ath-006676 Arabidopsis thaliana 38.82 6.00e-39 154.00
IUUC-Ago-007830 Ashbya gossypii 63.27 4.00e-13 69.30
IUUC-Acl-008212 Aspergillus clavatus 42.25 2.00e-17 82.80
IUUC-Afl-008605 Aspergillus flavus 43.97 5.00e-19 88.60
IUUC-Afu-008877 Aspergillus fumigatus 42.96 7.00e-18 84.70
IUUC-Ani-009460 Aspergillus nidulans 44.93 2.00e-19 89.70
IUUC-Aor-010032 Aspergillus oryzae 43.97 7.00e-19 88.20
IUUC-Ate-010458 Aspergillus terreus 45.95 3.00e-12 66.20
IUUC-Ame-010830 Astyanax mexicanus 93.59 2.00e-37 147.00
IUUC-Bgr-012056 Blumeria graminis 30.47 9.00e-19 87.80
IUUC-Bta-012922 Bos taurus 83.68 1.00e-79 289.00
IUUC-Bci-013933 Botrytis cinerea 45.14 2.00e-18 86.30
IUUC-Bdi-014452 Brachypodium distachyon 33.33 1.00e-32 134.00
IUUC-Bol-016493 Brassica oleracea 36.22 2.00e-32 133.00
IUUC-Bra-016970 Brassica rapa 37.01 5.00e-38 151.00
IUUC-Cel-018364 Caenorhabditis elegans 36.61 2.00e-17 82.80
IUUC-Cja-018772 Callithrix jacchus 79.49 3.00e-81 295.00
IUUC-Cfa-020683 Canis familiaris 78.60 6.00e-81 294.00
IUUC-Cpo-022145 Cavia porcellus 80.33 2.00e-87 316.00
IUUC-Cre-022810 Chlamydomonas reinhardtii 37.56 2.00e-28 119.00
IUUC-Csa-023714 Chlorocebus sabaeus 72.84 5.00e-120 424.00
IUUC-Cho-024814 Choloepus hoffmanni 74.12 2.00e-64 239.00
IUUC-Cin-025741 Ciona intestinalis 41.44 1.00e-37 150.00
IUUC-Csv-025823 Ciona savignyi 66.22 2.00e-24 105.00
IUUC-Cgl-026495 Colletotrichum gloeosporioides 49.33 2.00e-14 73.20
IUUC-Cne-027056 Cryptococcus neoformans 48.72 3.00e-15 75.90
IUUC-Cme-027260 Cyanidioschyzon merolae 25.55 7.00e-21 94.70
IUUC-Dre-028369 Danio rerio 69.92 3.00e-80 291.00
IUUC-Dno-029543 Dasypus novemcinctus 78.68 7.00e-82 297.00
IUUC-Dor-031041 Dipodomys ordii 81.55 6.00e-36 144.00
IUUC-Dse-031336 Dothistroma septosporum 45.86 5.00e-16 78.60
IUUC-Dme-032027 Drosophila melanogaster 37.64 2.00e-61 229.00
IUUC-Ete-032583 Echinops telfairi 70.29 3.00e-58 218.00
IUUC-Eca-034243 Equus caballus 81.59 5.00e-79 287.00
IUUC-Eeu-034721 Erinaceus europaeus 78.44 4.00e-62 231.00
IUUC-Fca-035679 Felis catus 78.02 3.00e-78 285.00
IUUC-Fal-037148 Ficedula albicollis 75.00 7.00e-81 293.00
IUUC-Fox-037960 Fusarium oxysporum 42.36 3.00e-15 76.30
IUUC-Fso-038107 Fusarium solani 50.00 9.00e-15 74.30
IUUC-Gmo-039080 Gadus morhua 62.20 6.00e-59 220.00
IUUC-Ggr-040116 Gaeumannomyces graminis 45.07 1.00e-15 77.00
IUUC-Gga-040544 Gallus gallus 73.67 3.00e-85 308.00
IUUC-Gac-042239 Gasterosteus aculeatus 58.62 2.00e-68 252.00
IUUC-Gma-043743 Glycine max 35.83 1.00e-37 150.00
IUUC-Ggo-045125 Gorilla gorilla 82.35 2.00e-84 305.00
IUUC-Hsa-046519 Homo sapiens 82.35 2.00e-84 305.00
IUUC-Hvu-047788 Hordeum vulgare 43.48 6.00e-11 62.00
IUUC-Itr-048295 Ictidomys tridecemlineatus 84.10 5.00e-79 287.00
IUUC-Kpa-049314 Komagataella pastoris 34.57 3.00e-28 118.00
IUUC-Lch-050553 Latimeria chalumnae 70.22 2.00e-75 275.00
IUUC-Lpe-051087 Leersia perrieri 34.73 2.00e-32 132.00
IUUC-Loc-051748 Lepisosteus oculatus 68.52 1.00e-73 269.00
IUUC-Lma-053328 Leptosphaeria maculans 48.68 5.00e-12 62.00
IUUC-Laf-054293 Loxodonta africana 78.68 5.00e-81 294.00
IUUC-Mcc-055600 Macaca mulatta 77.49 7.00e-86 310.00
IUUC-Meu-056082 Macropus eugenii 63.21 4.00e-64 238.00
IUUC-Mor-057287 Magnaporthe oryzae 47.44 2.00e-14 72.80
IUUC-Mpo-057609 Magnaporthe poae 44.53 7.00e-15 74.30
IUUC-Mtr-058239 Medicago truncatula 30.72 5.00e-48 184.00
IUUC-Mla-058961 Melampsora laricipopulina 43.80 8.00e-24 104.00
IUUC-Mga-060060 Meleagris gallopavo 48.65 3.00e-13 69.30
IUUC-Mvi-060220 Microbotryum violaceum 42.54 5.00e-22 99.00
IUUC-Mmr-061159 Microcebus murinus 82.79 1.00e-83 303.00
IUUC-Mdo-061967 Monodelphis domestica 80.83 9.00e-78 283.00
IUUC-Mmu-063258 Mus musculus 80.15 1.00e-88 320.00
IUUC-Mac-065180 Musa acuminata 35.16 2.00e-35 143.00
IUUC-Mpu-066389 Mustela putorius furo 81.18 3.00e-80 291.00
IUUC-Mlu-067999 Myotis lucifugus 83.26 3.00e-79 288.00
IUUC-Nfi-068390 Neosartorya fischeri 42.96 6.00e-18 84.70
IUUC-Ncr-068685 Neurospora crassa 42.03 5.00e-23 101.00
IUUC-Nle-069655 Nomascus leucogenys 79.70 2.00e-86 312.00
IUUC-Opr-070234 Ochotona princeps 96.43 9.00e-26 110.00
IUUC-Ont-072484 Oreochromis niloticus 62.59 8.00e-71 260.00
IUUC-Oan-073572 Ornithorhynchus anatinus 52.62 1.00e-89 323.00
IUUC-Ocu-074831 Oryctolagus cuniculus 78.75 1.00e-81 296.00
IUUC-Oba-075392 Oryza barthii 34.60 5.00e-31 128.00
IUUC-Obr-076660 Oryza brachyantha 34.25 2.00e-34 139.00
IUUC-Ogl-077067 Oryza glaberrima 30.79 2.00e-45 176.00
IUUC-Ogu-078883 Oryza glumaepatula 34.60 4.00e-31 128.00
IUUC-Oin-079203 Oryza indica 31.02 2.00e-45 176.00
IUUC-Olo-080929 Oryza longistaminata 34.60 4.00e-31 128.00
IUUC-Ome-081866 Oryza meridionalis 34.60 5.00e-31 128.00
IUUC-Oni-083092 Oryza nivara 34.60 5.00e-31 128.00
IUUC-Opu-083756 Oryza punctata 34.60 2.00e-31 129.00
IUUC-Oru-084816 Oryza rufipogon 34.60 5.00e-31 128.00
IUUC-Osa-085951 Oryza sativa 31.02 2.00e-45 176.00
IUUC-Ola-086540 Oryzias latipes 68.70 2.00e-65 243.00
IUUC-Olu-087843 Ostreococcus lucimarinus 40.00 1.00e-37 150.00
IUUC-Oga-088023 Otolemur garnettii 78.83 7.00e-81 293.00
IUUC-Oar-089964 Ovis aries 82.01 2.00e-79 289.00
IUUC-Ptr-091165 Pan troglodytes 80.00 3.00e-84 305.00
IUUC-Pan-092009 Papio anubis 78.83 8.00e-85 306.00
IUUC-Psi-093477 Pelodiscus sinensis 76.36 2.00e-75 276.00
IUUC-Pno-095064 Phaeosphaeria nodorum 47.37 2.00e-13 69.70
IUUC-Ppa-095210 Physcomitrella patens 46.05 9.00e-16 75.50
IUUC-Pfo-097385 Poecilia formosa 64.85 4.00e-70 258.00
IUUC-Pab-097868 Pongo abelii 80.00 7.00e-84 303.00
IUUC-Pop-099416 Populus trichocarpa 34.90 2.00e-37 149.00
IUUC-Pca-100652 Procavia capensis 77.45 2.00e-56 212.00
IUUC-Ppe-101368 Prunus persica 32.43 3.00e-51 195.00
IUUC-Pva-102137 Pteropus vampyrus 84.02 1.00e-81 296.00
IUUC-Pgr-103641 Puccinia graminis 60.00 9.00e-15 74.30
IUUC-Ptt-103717 Puccinia triticina 43.80 9.00e-24 104.00
IUUC-Pte-104303 Pyrenophora teres 49.29 3.00e-19 89.40
IUUC-Pyt-104580 Pyrenophora triticirepentis 49.29 3.00e-19 89.00
IUUC-Rno-104844 Rattus norvegicus 80.81 6.00e-89 320.00
IUUC-Sce-106214 Saccharomyces cerevisiae 60.00 9.00e-13 67.80
IUUC-Sha-107073 Sarcophilus harrisii 83.75 5.00e-78 284.00
IUUC-Sja-107851 Schizosaccharomyces japonicus 39.38 8.00e-38 150.00
IUUC-Spo-108298 Schizosaccharomyces pombe 38.37 4.00e-36 145.00
IUUC-Ssl-108382 Sclerotinia sclerotiorum 39.34 5.00e-16 78.60
IUUC-Smo-109518 Selaginella moellendorffii 41.96 1.00e-19 90.10
IUUC-Sit-109813 Setaria italica 34.77 4.00e-35 142.00
IUUC-Sly-111480 Solanum lycopersicum 38.15 8.00e-42 164.00
IUUC-Stu-112054 Solanum tuberosum 37.94 2.00e-38 152.00
IUUC-Sar-112925 Sorex araneus 73.53 1.00e-72 266.00
IUUC-Sbi-114459 Sorghum bicolor 32.71 2.00e-35 142.00
IUUC-Ssc-116329 Sus scrofa 78.39 3.00e-79 288.00
IUUC-Tgu-116918 Taeniopygia guttata 74.61 4.00e-82 298.00
IUUC-Tru-118651 Takifugu rubripes 60.75 5.00e-73 268.00
IUUC-Tsy-118836 Tarsius syrichta 88.57 2.00e-43 169.00
IUUC-Tni-120493 Tetraodon nigroviridis 60.24 3.00e-70 258.00
IUUC-Tca-121594 Theobroma cacao 35.74 3.00e-37 149.00
IUUC-Tre-121911 Trichoderma reesei 44.37 8.00e-16 77.80
IUUC-Tvi-122617 Trichoderma virens 50.00 2.00e-16 79.70
IUUC-Tae-125230 Triticum aestivum 37.59 1.00e-19 90.90
IUUC-Tur-126610 Triticum urartu 34.98 3.00e-30 126.00
IUUC-Tme-127092 Tuber melanosporum 50.72 3.00e-20 92.80
IUUC-Tbe-127493 Tupaia belangeri 68.20 3.00e-52 198.00
IUUC-Ttr-128464 Tursiops truncatus 78.39 2.00e-79 289.00
IUUC-Uma-129484 Ustilago maydis 53.06 2.00e-11 63.50
IUUC-Vda-129946 Verticillium dahliae 44.93 5.00e-17 81.60
IUUC-Vpa-130357 Vicugna pacos 76.50 1.00e-54 206.00
IUUC-Vvi-131039 Vitis vinifera 35.86 2.00e-39 156.00
IUUC-Xma-133503 Xiphophorus maculatus 64.17 1.00e-70 259.00
IUUC-Yli-134615 Yarrowia lipolytica 41.63 3.00e-36 145.00
IUUC-Zma-135929 Zea mays 33.08 2.00e-35 142.00
Created Date 25-Jun-2017

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