iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114802

UUCD1 version

UUC-SoB-00067

Ensembl Protein ID

Sb03g013120.1

UniProt Accession

A0A1B6Q3H2; A0A1B6Q3H2_SORBI

Genbank Protein ID

KXG32415.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000762

Gene Name

SORBI_003G151200

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb03g013120	Sb03g013120.1	Sb03g013120.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.90e-30	103.8	267	304
UBD/Beta-Prp	2.90e-51	175.2	217	516

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           H+++v c++f  d  +l+sG+ Dg ikvW++rtg +l+
   Q: 267  HEEPVLCVDFsRDsEMLASGAQDGMIKVWRIRTGQCLR 304
           99*********777*********************986 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkl........lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlk.ghed 95
           +k+   c  fspd+++l++ s dg i+vwd+ +gkl         +s+  he++v +v+fs+d+++l++g++D++ikvw ++tg+c++ l+ +h++
   Q: 217  KKTHPECARFSPDGQYLVSCSVDGIIEVWDYLSGKLkkdlqyqaDESFMMHEEPVLCVDFSRDSEMLASGAQDGMIKVWRIRTGQCLRRLErAHSK 312
           4566789*****************************888888877888889999************************************989*** PP
   S: 96   svlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtl......tgghtdsvys 185
            v+s++fs++g  ++s+s d t+rv  l++g+ l+  ++gh++ vn++ +  dg+ ++++s D tv++Wd kt ++l+t+      +g  + sv+s
   Q: 313  GVTSVTFSRDGTQILSTSFDTTARVHGLKSGKMLK-EFRGHTSYVNYAIFTTDGSRVITASSDCTVKVWDTKTTDCLHTFkpppplRG-GDASVNS 406
           ***********************************.*************************************************777.99***** PP
   S: 186  ls.fdsngkelvsgsldgtvklwdlqtgecvrtlng.htdnvksvrfs..pnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgd 277
           +  f +n  ++v + + +++ +  lq g++v+++    ++    v++s  p++e+++++++D   +++ ++sg+l + ++ h++ vi +++ ++ +
   Q: 407  VHlFPKNTDHIVVCNKTSSIFIMTLQ-GQVVKSFSSgKREGGDFVAASvsPKGEWIYCVGEDMNMYCFSYQSGKLEHLMKVHEKDVIGITH-HPHR 500
           **999999*****************6.66777776516666666666566*****************************************.**** PP
   S: 278  nvlvlgsedskvniwk 293
           n +++ +ed+  +iwk
   Q: 501  NLVATIAEDCMMKIWK 516
           ***************8 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MASSASTLEI EARDVVKIVL QFCKENSLQQ TFQTLQNECQ VSLNTVDSID TFIADINAGR 60
WDAVLPQVAQ LKLPRKKLED LYEQIVLEMA ELRELDTARA ILRQTQVMGV MKQEQPERYL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTGGCCCAAT CGCCGAAGCT CATCCCACCC GAGCGCCTCT CCTCTCCCTC CCCCTCTCCG 60
GCAGCCGCTC CCCGGCTTAC CGCCGTAGCA GCCGCCGCCT CCCGCAGAAG CCGAAGATGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR003143--Cyt_cd1_C
IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000857	Aegilops tauschii	95.36	1.00e-81	293.00
IUUC-Aml-001330	Ailuropoda melanoleuca	65.43	0.00e+00	729.00
IUUC-Atr-002570	Amborella trichopoda	86.91	0.00e+00	960.00
IUUC-Apl-003826	Anas platyrhynchos	66.19	0.00e+00	703.00
IUUC-Aca-005183	Anolis carolinensis	65.18	0.00e+00	723.00
IUUC-Aly-005632	Arabidopsis lyrata	83.33	0.00e+00	930.00
IUUC-Ath-007219	Arabidopsis thaliana	83.73	0.00e+00	927.00
IUUC-Ame-011374	Astyanax mexicanus	65.04	0.00e+00	724.00
IUUC-Bta-012890	Bos taurus	65.43	0.00e+00	729.00
IUUC-Bdi-014061	Brachypodium distachyon	91.88	0.00e+00	1012.00
IUUC-Bol-016332	Brassica oleracea	83.89	0.00e+00	930.00
IUUC-Bra-017612	Brassica rapa	83.73	0.00e+00	930.00
IUUC-Cel-018238	Caenorhabditis elegans	52.45	7.00e-166	575.00
IUUC-Cja-019336	Callithrix jacchus	65.43	0.00e+00	729.00
IUUC-Cfa-021108	Canis familiaris	65.23	0.00e+00	728.00
IUUC-Cpo-022052	Cavia porcellus	65.43	0.00e+00	729.00
IUUC-Cre-022595	Chlamydomonas reinhardtii	67.32	0.00e+00	742.00
IUUC-Csa-023488	Chlorocebus sabaeus	65.43	0.00e+00	729.00
IUUC-Cho-025010	Choloepus hoffmanni	57.42	3.00e-180	623.00
IUUC-Cin-025251	Ciona intestinalis	64.47	0.00e+00	706.00
IUUC-Csv-026092	Ciona savignyi	60.26	0.00e+00	639.00
IUUC-Dre-027382	Danio rerio	64.84	0.00e+00	720.00
IUUC-Dno-029007	Dasypus novemcinctus	65.62	0.00e+00	729.00
IUUC-Dor-030180	Dipodomys ordii	56.41	9.00e-129	452.00
IUUC-Dme-031762	Drosophila melanogaster	62.50	0.00e+00	703.00
IUUC-Ete-032933	Echinops telfairi	64.57	2.00e-171	594.00
IUUC-Eca-033864	Equus caballus	65.67	0.00e+00	719.00
IUUC-Eeu-034635	Erinaceus europaeus	59.86	2.00e-152	531.00
IUUC-Fca-036119	Felis catus	65.43	0.00e+00	729.00
IUUC-Fal-037396	Ficedula albicollis	66.33	0.00e+00	714.00
IUUC-Gmo-038962	Gadus morhua	63.87	0.00e+00	715.00
IUUC-Gga-040134	Gallus gallus	65.62	0.00e+00	729.00
IUUC-Gac-041630	Gasterosteus aculeatus	64.45	0.00e+00	720.00
IUUC-Gma-043928	Glycine max	88.48	0.00e+00	973.00
IUUC-Ggo-045061	Gorilla gorilla	65.18	0.00e+00	724.00
IUUC-Hsa-046215	Homo sapiens	65.43	0.00e+00	729.00
IUUC-Hvu-047799	Hordeum vulgare	92.92	0.00e+00	719.00
IUUC-Itr-048826	Ictidomys tridecemlineatus	65.43	0.00e+00	729.00
IUUC-Lch-050209	Latimeria chalumnae	60.43	0.00e+00	659.00
IUUC-Lpe-050740	Leersia perrieri	93.42	0.00e+00	1026.00
IUUC-Loc-052739	Lepisosteus oculatus	59.65	0.00e+00	655.00
IUUC-Laf-053895	Loxodonta africana	65.30	0.00e+00	724.00
IUUC-Mcc-055183	Macaca mulatta	65.43	0.00e+00	729.00
IUUC-Mtr-057730	Medicago truncatula	86.91	0.00e+00	941.00
IUUC-Mga-059222	Meleagris gallopavo	67.22	3.00e-176	610.00
IUUC-Mmr-061749	Microcebus murinus	65.67	0.00e+00	719.00
IUUC-Mdo-062920	Monodelphis domestica	65.23	0.00e+00	727.00
IUUC-Mmu-063228	Mus musculus	65.43	0.00e+00	729.00
IUUC-Mac-065084	Musa acuminata	87.89	0.00e+00	975.00
IUUC-Mpu-066162	Mustela putorius furo	65.43	0.00e+00	729.00
IUUC-Mlu-067471	Myotis lucifugus	64.45	0.00e+00	721.00
IUUC-Nle-070129	Nomascus leucogenys	65.43	0.00e+00	729.00
IUUC-Opr-071176	Ochotona princeps	65.67	0.00e+00	719.00
IUUC-Ont-071830	Oreochromis niloticus	64.84	0.00e+00	724.00
IUUC-Oan-072778	Ornithorhynchus anatinus	65.62	0.00e+00	729.00
IUUC-Ocu-074570	Oryctolagus cuniculus	65.43	0.00e+00	729.00
IUUC-Oba-075507	Oryza barthii	94.20	0.00e+00	1032.00
IUUC-Obr-076672	Oryza brachyantha	94.58	0.00e+00	1038.00
IUUC-Ogl-077110	Oryza glaberrima	94.20	0.00e+00	1032.00
IUUC-Ogu-077976	Oryza glumaepatula	94.20	0.00e+00	1032.00
IUUC-Oin-079525	Oryza indica	94.20	0.00e+00	1032.00
IUUC-Olo-080391	Oryza longistaminata	91.54	0.00e+00	1021.00
IUUC-Oni-082778	Oryza nivara	94.20	0.00e+00	1032.00
IUUC-Opu-083710	Oryza punctata	94.00	0.00e+00	1029.00
IUUC-Oru-084250	Oryza rufipogon	94.20	0.00e+00	1032.00
IUUC-Osa-085363	Oryza sativa	94.20	0.00e+00	1032.00
IUUC-Ola-087092	Oryzias latipes	64.45	0.00e+00	721.00
IUUC-Olu-087753	Ostreococcus lucimarinus	54.56	2.00e-150	525.00
IUUC-Oga-088278	Otolemur garnettii	59.57	0.00e+00	643.00
IUUC-Oar-089664	Ovis aries	65.05	0.00e+00	723.00
IUUC-Ptr-090991	Pan troglodytes	65.43	0.00e+00	729.00
IUUC-Pan-092697	Papio anubis	65.43	0.00e+00	729.00
IUUC-Psi-093204	Pelodiscus sinensis	66.13	0.00e+00	713.00
IUUC-Ppa-095319	Physcomitrella patens	82.03	0.00e+00	915.00
IUUC-Pfo-096988	Poecilia formosa	64.84	0.00e+00	722.00
IUUC-Pab-098288	Pongo abelii	65.43	0.00e+00	729.00
IUUC-Pop-098787	Populus trichocarpa	87.25	0.00e+00	963.00
IUUC-Pca-100583	Procavia capensis	61.11	0.00e+00	646.00
IUUC-Ppe-101307	Prunus persica	86.33	0.00e+00	954.00
IUUC-Pva-102711	Pteropus vampyrus	65.43	0.00e+00	729.00
IUUC-Rno-105614	Rattus norvegicus	65.43	0.00e+00	729.00
IUUC-Sha-107017	Sarcophilus harrisii	65.43	0.00e+00	729.00
IUUC-Smo-108800	Selaginella moellendorffii	78.04	0.00e+00	834.00
IUUC-Sit-110278	Setaria italica	96.13	0.00e+00	1024.00
IUUC-Sly-111777	Solanum lycopersicum	86.94	0.00e+00	959.00
IUUC-Stu-112293	Solanum tuberosum	87.33	0.00e+00	962.00
IUUC-Sar-112955	Sorex araneus	58.48	0.00e+00	629.00
IUUC-Ssc-116054	Sus scrofa	65.43	0.00e+00	729.00
IUUC-Tgu-116909	Taeniopygia guttata	65.56	0.00e+00	721.00
IUUC-Tru-118195	Takifugu rubripes	65.62	0.00e+00	733.00
IUUC-Tsy-119420	Tarsius syrichta	59.96	0.00e+00	646.00
IUUC-Tni-120416	Tetraodon nigroviridis	65.43	0.00e+00	728.00
IUUC-Tca-121653	Theobroma cacao	87.87	0.00e+00	946.00
IUUC-Tae-125609	Triticum aestivum	93.42	0.00e+00	1023.00
IUUC-Tur-126197	Triticum urartu	92.90	0.00e+00	734.00
IUUC-Tbe-128009	Tupaia belangeri	66.57	5.00e-138	483.00
IUUC-Ttr-128719	Tursiops truncatus	59.18	0.00e+00	645.00
IUUC-Vpa-130579	Vicugna pacos	65.23	0.00e+00	721.00
IUUC-Vvi-131127	Vitis vinifera	87.13	0.00e+00	961.00
IUUC-Xtr-132950	Xenopus tropicalis	60.47	0.00e+00	662.00
IUUC-Xma-133537	Xiphophorus maculatus	64.84	0.00e+00	722.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence