iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Dre-027692

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Chromodomain helicase DNA-binding protein 4b

Genbank Nucleotide ID

BX511250

Gene Name

chd4b

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000025789.11	ENSDART00000148389.1	ENSDARP00000124629.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	2.10e-17	64.0	458	502

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           ++C vC++gge    l++C+ C + +H +Cl+++  ++ pn e wiCp+C 
   Q: 458  EFCRVCKDGGE----LLCCDTCPSSYHLHCLNPP-LPDIPNGE-WICPRCL 502
           58*********....*******************.*******8.******5 PP

Organism

Danio rerio

Protein Sequence
(Fasta)

MSGSEDDRDR FEPMGDDIEE QISETDTPKS KKKKKAKKSR ESRTSKRQKV IREEIAVSSP 60
EVMEAIRMAE GEEEEDRVMR SESEGSDYAP SKKKKKRSSS SKDRKKGSAG EKAGGSGGKS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTTGAGTGAG TGTTGTAGGG AGGGGGCAGT GTGCCTGGGA TTATTATGGG ATGTCTCTAC 60
CCCCCCTGAT TTCTTTGTGT GTACGAGGAT GTTCGCTTCT GGTCACTGAC GCTGGGGAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR028725--CHD4
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0016581--C:NuRD complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0006325--P:chromatin organization
GO:0006355--P:regulation of transcription, DNA-templated
GO:0051225--P:spindle assembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Apl-004175	Anas platyrhynchos	80.26	0.00e+00	2368.00
IUUC-Ame-011705	Astyanax mexicanus	87.18	0.00e+00	2603.00
IUUC-Gac-042478	Gasterosteus aculeatus	76.11	0.00e+00	2466.00
IUUC-Hsa-045908	Homo sapiens	76.00	0.00e+00	2343.00
IUUC-Nle-070039	Nomascus leucogenys	75.95	0.00e+00	2332.00
IUUC-Oan-072885	Ornithorhynchus anatinus	63.63	0.00e+00	1409.00
IUUC-Ocu-074177	Oryctolagus cuniculus	79.13	0.00e+00	2034.00
IUUC-Pfo-096727	Poecilia formosa	83.38	0.00e+00	2502.00
IUUC-Pab-097959	Pongo abelii	74.61	0.00e+00	2293.00
IUUC-Tsy-119261	Tarsius syrichta	71.29	0.00e+00	1739.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence