iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	TRANSFAC	RAID2
Post-translational Modifications (PTMs)
PhosphositePlus
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.10e-15	57.5	79	110

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sdtllvsGsdDgtikvWD 29
           gHt++v ++++   +d+ ++s+sdD t++vW 
   Q: 79   GHTGPVLDIDWcphNDNVIASASDDTTVMVWQ 110
           8***********9877***************7 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MSRRVVRQSK FRHVFGQAAK ADQAYEDIRV SKVTWDSAFC AVNPKFLAII VEAGGGGAFI 60
VLPLAKTGRV DKNYPLVTGH TGPVLDIDWC PHNDNVIASA SDDTTVMVWQ IPDYTPVRNI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAACTCGCTG GCCTGAACGC ACCGACGCCT CCTCCCTCGT CCCTCCGCGT ACCCCGGCCC 60
GCTCCGCAGA GGAGTCGCAT CGTGAGCACC TCCGCCCGGC TTAGGACCAG GTACCCCCCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR027337--CORO6
IPR015505--Coronin
IPR015048--DUF1899
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08953--DUF1899
PF00400--WD40

SMART

SM01166--DUF1899
SM00320--WD40

Gene Ontology

GO:0015629--C:actin cytoskeleton
GO:0051015--F:actin filament binding
GO:0030036--P:actin cytoskeleton organization

KEGG

rno:245982

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001462	Ailuropoda melanoleuca	93.28	0.00e+00	920.00
IUUC-Aca-005215	Anolis carolinensis	80.08	0.00e+00	795.00
IUUC-Ago-007901	Ashbya gossypii	40.44	7.00e-89	321.00
IUUC-Ame-011142	Astyanax mexicanus	73.25	0.00e+00	757.00
IUUC-Bta-013160	Bos taurus	87.29	0.00e+00	841.00
IUUC-Cel-018669	Caenorhabditis elegans	52.89	2.00e-115	409.00
IUUC-Cja-019934	Callithrix jacchus	94.92	0.00e+00	939.00
IUUC-Cfa-020414	Canis familiaris	95.97	0.00e+00	947.00
IUUC-Cpo-022256	Cavia porcellus	92.16	0.00e+00	913.00
IUUC-Csa-023319	Chlorocebus sabaeus	95.55	0.00e+00	919.00
IUUC-Dre-028652	Danio rerio	75.57	0.00e+00	726.00
IUUC-Dor-030506	Dipodomys ordii	95.76	0.00e+00	944.00
IUUC-Eca-033550	Equus caballus	93.22	0.00e+00	927.00
IUUC-Eeu-035286	Erinaceus europaeus	95.97	3.00e-173	600.00
IUUC-Fca-035787	Felis catus	92.37	0.00e+00	921.00
IUUC-Fal-036912	Ficedula albicollis	82.63	0.00e+00	831.00
IUUC-Gmo-038645	Gadus morhua	71.97	0.00e+00	736.00
IUUC-Gga-040968	Gallus gallus	81.57	0.00e+00	811.00
IUUC-Gac-042489	Gasterosteus aculeatus	70.97	0.00e+00	723.00
IUUC-Ggo-044731	Gorilla gorilla	95.76	0.00e+00	944.00
IUUC-Hsa-046725	Homo sapiens	96.40	0.00e+00	957.00
IUUC-Itr-048296	Ictidomys tridecemlineatus	95.97	0.00e+00	928.00
IUUC-Kpa-049089	Komagataella pastoris	43.80	2.00e-94	340.00
IUUC-Loc-052779	Lepisosteus oculatus	69.53	0.00e+00	711.00
IUUC-Laf-054086	Loxodonta africana	94.49	0.00e+00	944.00
IUUC-Mcc-055571	Macaca mulatta	92.58	0.00e+00	891.00
IUUC-Mga-059353	Meleagris gallopavo	79.10	0.00e+00	794.00
IUUC-Mmr-060830	Microcebus murinus	95.34	0.00e+00	949.00
IUUC-Mdo-062184	Monodelphis domestica	89.66	0.00e+00	867.00
IUUC-Mmu-064073	Mus musculus	95.55	0.00e+00	899.00
IUUC-Mpu-066824	Mustela putorius furo	95.76	0.00e+00	947.00
IUUC-Mlu-066994	Myotis lucifugus	91.53	0.00e+00	905.00
IUUC-Nle-069218	Nomascus leucogenys	96.40	0.00e+00	957.00
IUUC-Opr-071137	Ochotona princeps	95.97	0.00e+00	948.00
IUUC-Ont-071691	Oreochromis niloticus	72.61	0.00e+00	729.00
IUUC-Oan-073671	Ornithorhynchus anatinus	82.63	0.00e+00	780.00
IUUC-Ocu-074167	Oryctolagus cuniculus	95.13	0.00e+00	942.00
IUUC-Ola-086676	Oryzias latipes	70.64	0.00e+00	738.00
IUUC-Oga-088077	Otolemur garnettii	95.55	0.00e+00	947.00
IUUC-Oar-089260	Ovis aries	95.13	0.00e+00	939.00
IUUC-Ptr-090488	Pan troglodytes	95.97	0.00e+00	946.00
IUUC-Pan-091682	Papio anubis	95.76	0.00e+00	926.00
IUUC-Pfo-096186	Poecilia formosa	71.76	0.00e+00	721.00
IUUC-Pab-098768	Pongo abelii	87.71	0.00e+00	845.00
IUUC-Pca-100926	Procavia capensis	90.45	0.00e+00	790.00
IUUC-Pva-102483	Pteropus vampyrus	91.10	0.00e+00	877.00
IUUC-Sce-106378	Saccharomyces cerevisiae	41.13	2.00e-91	329.00
IUUC-Ssc-116384	Sus scrofa	81.55	0.00e+00	764.00
IUUC-Tgu-117038	Taeniopygia guttata	80.61	0.00e+00	735.00
IUUC-Tru-118281	Takifugu rubripes	69.65	0.00e+00	715.00
IUUC-Tni-120360	Tetraodon nigroviridis	71.40	0.00e+00	722.00
IUUC-Tbe-127703	Tupaia belangeri	91.92	0.00e+00	668.00
IUUC-Ttr-128355	Tursiops truncatus	90.25	0.00e+00	874.00
IUUC-Xtr-132642	Xenopus tropicalis	69.13	0.00e+00	702.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence