iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sja-107796

Ensembl Protein ID

EEB06136

UniProt Accession

B6JZY6; B6JZY6_SCHJY

Genbank Protein ID

EEB06136.1

Protein Name

WD repeat protein Pfs2

Genbank Nucleotide ID

KE651168

Gene Name

SJAG_01175

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SJAG_01175	EEB06136	EEB06136

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.80e-37	123.2	209	242
UBD/Beta-Prp	7.80e-52	174.3	75	324

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 6    vtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           v  +++ ++ +llvsGs D+ +k WD+rtg++l 
   Q: 209  VKTVDWhPSkGLLVSGSKDNLVKFWDPRTGTCLA 242
           7889***888*********************986 PP

UBD/Beta-Prp

   S: 4    tlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp 104
           t+ ++  +vi++v ++pd++ l+tgs +g  ++w+  t ++    ++h+ +v++ ++s+dg +l++g   +++k ++++ +  v ++++he +v++l+fsp
   Q: 75   TSANKARHVINVVRWTPDGRRLLTGSSTGEFTLWNGLTFNFELINQSHDYAVRCAEWSNDGRWLLSGDGGGMVKYFEPNLN-NVKIVQAHEMEVRDLAFSP 174
           66777889******************************9998888*******************************77654.4566788************ PP
   S: 105  sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsng..kelvsgsldgt 203
           +++k+v++s+d  ++vw+ +t  + +  l+gh   v +v +hp++ llvsGs+D+ v++Wd +tg++l tl g h++ +   sf+++   + ++++s+d+t
   Q: 175  NDSKFVTASDDGSLKVWNFHTSAEEQ-KLTGHGWDVKTVDWHPSKGLLVSGSKDNLVKFWDPRTGTCLATLHG-HKNTIMQASFQRDTrnNLIATVSRDST 273
           **************************.*********************************************9.************998899********* PP
   S: 204  vklwdlqtgecvrtlnghtdnvksvrfspnderlvsgs.sDgsiriWdlrs 253
            +++dl+t + +r l+gh++ +++++ +p +  +v+++ sDgs++ + l+ 
   Q: 274  CRIFDLRTMKSIRVLRGHDKDINCLAWHPTNPNIVTTGgSDGSVNHYSLDE 324
           ****************************76666665555******997765 PP

Organism

Schizosaccharomyces japonicus

Protein Sequence
(Fasta)

MERAENARII QKPMTRRTVD YGSGVSKYVT DRLVRCNPYH IVRPRPNANQ IINLYPPYEY 60
PFDSAATFCT KYIHTSANKA RHVINVVRWT PDGRRLLTGS STGEFTLWNG LTFNFELINQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTCAGCGCT AAGCACTGTT TACCTGCTGC TTAAGACATA GCAGACTGTG ACAAAAGGAC 60
ACCATTCGGA ACGCGGTTTG TTTGTATTTT AACTGTGTTT TCTTCGTTTT CTTTGTTCTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0005847--C:mRNA cleavage and polyadenylation specificity factor complex
GO:0000790--C:nuclear chromatin
GO:0006378--P:mRNA polyadenylation
GO:0098789--P:pre-mRNA cleavage required for polyadenylation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001064	Aegilops tauschii	40.10	1.00e-88	318.00
IUUC-Aml-001363	Ailuropoda melanoleuca	44.53	1.00e-101	362.00
IUUC-Atr-003030	Amborella trichopoda	41.77	4.00e-97	346.00
IUUC-Apl-003409	Anas platyrhynchos	44.31	1.00e-99	355.00
IUUC-Aca-004694	Anolis carolinensis	44.53	6.00e-101	360.00
IUUC-Aly-006063	Arabidopsis lyrata	43.70	3.00e-97	347.00
IUUC-Ath-006583	Arabidopsis thaliana	39.56	1.00e-94	338.00
IUUC-Ago-007805	Ashbya gossypii	41.98	1.00e-87	314.00
IUUC-Acl-008075	Aspergillus clavatus	48.77	6.00e-108	382.00
IUUC-Afl-008582	Aspergillus flavus	48.28	5.00e-104	369.00
IUUC-Afu-008817	Aspergillus fumigatus	48.35	1.00e-95	341.00
IUUC-Ani-009391	Aspergillus nidulans	46.23	4.00e-99	353.00
IUUC-Ang-009750	Aspergillus niger	49.03	1.00e-84	304.00
IUUC-Aor-010085	Aspergillus oryzae	46.68	1.00e-105	375.00
IUUC-Ate-010397	Aspergillus terreus	46.93	1.00e-106	378.00
IUUC-Ame-010741	Astyanax mexicanus	48.55	5.00e-67	247.00
IUUC-Bgr-012169	Blumeria graminis	53.12	7.00e-113	399.00
IUUC-Bta-013265	Bos taurus	44.53	3.00e-101	361.00
IUUC-Bci-013762	Botrytis cinerea	50.74	9.00e-123	431.00
IUUC-Bdi-014849	Brachypodium distachyon	42.43	3.00e-97	347.00
IUUC-Bol-015325	Brassica oleracea	43.52	3.00e-98	350.00
IUUC-Bra-017064	Brassica rapa	43.44	1.00e-98	351.00
IUUC-Cel-018378	Caenorhabditis elegans	43.04	6.00e-92	330.00
IUUC-Cja-019547	Callithrix jacchus	44.53	2.00e-101	362.00
IUUC-Cfa-020031	Canis familiaris	44.53	2.00e-101	362.00
IUUC-Cpo-021554	Cavia porcellus	45.01	4.00e-99	354.00
IUUC-Cre-022830	Chlamydomonas reinhardtii	35.31	1.00e-62	231.00
IUUC-Csa-023146	Chlorocebus sabaeus	44.28	5.00e-101	360.00
IUUC-Cho-024679	Choloepus hoffmanni	43.28	4.00e-94	338.00
IUUC-Cin-025415	Ciona intestinalis	40.45	5.00e-88	317.00
IUUC-Csv-026003	Ciona savignyi	36.59	1.00e-86	311.00
IUUC-Cgl-026391	Colletotrichum gloeosporioides	53.78	3.00e-120	423.00
IUUC-Cne-026983	Cryptococcus neoformans	44.61	9.00e-99	352.00
IUUC-Cme-027147	Cyanidioschyzon merolae	38.04	1.00e-92	331.00
IUUC-Dre-028545	Danio rerio	44.28	2.00e-100	358.00
IUUC-Dno-029677	Dasypus novemcinctus	44.53	1.00e-101	362.00
IUUC-Dse-031371	Dothistroma septosporum	47.75	2.00e-101	360.00
IUUC-Dme-031663	Drosophila melanogaster	41.58	2.00e-95	341.00
IUUC-Ete-032511	Echinops telfairi	36.82	3.00e-75	275.00
IUUC-Eca-034152	Equus caballus	44.53	2.00e-101	362.00
IUUC-Eeu-034560	Erinaceus europaeus	31.98	3.00e-27	115.00
IUUC-Fca-035820	Felis catus	44.53	3.00e-101	361.00
IUUC-Fox-037958	Fusarium oxysporum	50.75	3.00e-120	423.00
IUUC-Fso-038162	Fusarium solani	49.52	4.00e-120	423.00
IUUC-Gmo-039708	Gadus morhua	44.03	8.00e-101	359.00
IUUC-Ggr-040031	Gaeumannomyces graminis	47.39	2.00e-109	387.00
IUUC-Gga-040963	Gallus gallus	44.53	3.00e-101	361.00
IUUC-Gac-041541	Gasterosteus aculeatus	43.78	4.00e-98	350.00
IUUC-Gma-044352	Glycine max	43.55	1.00e-98	352.00
IUUC-Ggo-045564	Gorilla gorilla	44.53	3.00e-101	361.00
IUUC-Hsa-045833	Homo sapiens	44.53	2.00e-101	362.00
IUUC-Hvu-047848	Hordeum vulgare	40.50	9.00e-65	239.00
IUUC-Itr-048083	Ictidomys tridecemlineatus	44.53	3.00e-101	361.00
IUUC-Kpa-049308	Komagataella pastoris	42.03	9.00e-104	368.00
IUUC-Lch-050525	Latimeria chalumnae	44.28	3.00e-100	358.00
IUUC-Lpe-051364	Leersia perrieri	37.97	2.00e-81	295.00
IUUC-Loc-052696	Lepisosteus oculatus	44.53	2.00e-99	355.00
IUUC-Lma-052951	Leptosphaeria maculans	52.96	7.00e-120	422.00
IUUC-Laf-053653	Loxodonta africana	44.28	6.00e-101	360.00
IUUC-Mcc-055797	Macaca mulatta	44.53	2.00e-101	362.00
IUUC-Meu-056331	Macropus eugenii	46.67	1.00e-85	309.00
IUUC-Mor-057168	Magnaporthe oryzae	49.75	5.00e-118	416.00
IUUC-Mpo-057510	Magnaporthe poae	49.81	2.00e-75	274.00
IUUC-Mtr-058032	Medicago truncatula	43.62	5.00e-98	350.00
IUUC-Mla-058852	Melampsora laricipopulina	46.12	4.00e-111	392.00
IUUC-Mga-059311	Meleagris gallopavo	44.53	4.00e-101	361.00
IUUC-Mvi-060544	Microbotryum violaceum	46.62	1.00e-109	387.00
IUUC-Mmr-061143	Microcebus murinus	44.53	2.00e-101	362.00
IUUC-Mdo-061977	Monodelphis domestica	44.53	5.00e-101	360.00
IUUC-Mmu-063922	Mus musculus	44.53	2.00e-101	362.00
IUUC-Mac-064961	Musa acuminata	42.17	3.00e-99	353.00
IUUC-Mpu-066079	Mustela putorius furo	48.39	6.00e-95	340.00
IUUC-Mlu-067247	Myotis lucifugus	44.53	9.00e-102	363.00
IUUC-Nfi-068255	Neosartorya fischeri	49.46	1.00e-101	361.00
IUUC-Ncr-068909	Neurospora crassa	52.10	4.00e-122	429.00
IUUC-Nle-068994	Nomascus leucogenys	44.53	2.00e-101	362.00
IUUC-Opr-071079	Ochotona princeps	44.53	3.00e-101	361.00
IUUC-Ont-071971	Oreochromis niloticus	43.78	2.00e-99	355.00
IUUC-Oan-073135	Ornithorhynchus anatinus	47.11	2.00e-96	345.00
IUUC-Ocu-073982	Oryctolagus cuniculus	44.53	2.00e-101	362.00
IUUC-Oba-075297	Oryza barthii	39.07	4.00e-84	303.00
IUUC-Obr-076641	Oryza brachyantha	43.81	3.00e-99	353.00
IUUC-Ogl-077539	Oryza glaberrima	41.30	2.00e-68	251.00
IUUC-Ogu-078807	Oryza glumaepatula	39.07	4.00e-84	303.00
IUUC-Oin-079229	Oryza indica	43.24	2.00e-99	354.00
IUUC-Olo-080371	Oryza longistaminata	39.11	7.00e-84	302.00
IUUC-Ome-081149	Oryza meridionalis	38.82	4.00e-83	300.00
IUUC-Oni-082970	Oryza nivara	39.07	4.00e-84	303.00
IUUC-Opu-083415	Oryza punctata	39.26	1.00e-82	298.00
IUUC-Oru-085236	Oryza rufipogon	39.56	4.00e-84	303.00
IUUC-Ola-087421	Oryzias latipes	44.03	4.00e-101	359.00
IUUC-Olu-087821	Ostreococcus lucimarinus	42.67	6.00e-94	335.00
IUUC-Oga-088132	Otolemur garnettii	44.53	3.00e-101	361.00
IUUC-Oar-089513	Ovis aries	44.53	3.00e-101	361.00
IUUC-Ptr-090717	Pan troglodytes	44.53	2.00e-101	362.00
IUUC-Pan-092108	Papio anubis	44.53	2.00e-101	362.00
IUUC-Psi-093892	Pelodiscus sinensis	44.53	7.00e-101	360.00
IUUC-Pma-094561	Petromyzon marinus	44.03	6.00e-100	357.00
IUUC-Pno-094943	Phaeosphaeria nodorum	50.87	3.00e-120	423.00
IUUC-Ppa-095359	Physcomitrella patens	42.27	3.00e-107	380.00
IUUC-Pfo-096516	Poecilia formosa	43.67	7.00e-98	350.00
IUUC-Pab-097759	Pongo abelii	44.53	2.00e-101	362.00
IUUC-Pop-099553	Populus trichocarpa	43.42	7.00e-99	352.00
IUUC-Ppe-101957	Prunus persica	43.18	2.00e-99	354.00
IUUC-Pva-102918	Pteropus vampyrus	44.53	2.00e-101	362.00
IUUC-Pgr-103594	Puccinia graminis	46.43	6.00e-113	399.00
IUUC-Ptt-103879	Puccinia triticina	48.10	5.00e-97	346.00
IUUC-Pte-104419	Pyrenophora teres	50.37	1.00e-120	424.00
IUUC-Pyt-104718	Pyrenophora triticirepentis	52.30	7.00e-119	419.00
IUUC-Rno-105838	Rattus norvegicus	44.53	2.00e-101	362.00
IUUC-Sce-106331	Saccharomyces cerevisiae	42.46	8.00e-88	315.00
IUUC-Sha-107435	Sarcophilus harrisii	44.31	8.00e-100	356.00
IUUC-Spo-108163	Schizosaccharomyces pombe	73.16	0.00e+00	769.00
IUUC-Smo-108972	Selaginella moellendorffii	46.63	3.00e-102	363.00
IUUC-Sit-109729	Setaria italica	41.87	8.00e-98	349.00
IUUC-Sly-111679	Solanum lycopersicum	40.31	8.00e-100	355.00
IUUC-Sar-113157	Sorex araneus	44.53	2.00e-101	362.00
IUUC-Sbi-114853	Sorghum bicolor	41.94	5.00e-97	346.00
IUUC-Sre-115085	Sporisorium reilianum	47.16	3.00e-98	350.00
IUUC-Ssc-116286	Sus scrofa	44.17	2.00e-99	355.00
IUUC-Tgu-117219	Taeniopygia guttata	44.53	7.00e-101	360.00
IUUC-Tru-117550	Takifugu rubripes	44.03	1.00e-100	358.00
IUUC-Tsy-119294	Tarsius syrichta	44.53	1.00e-101	363.00
IUUC-Tni-120561	Tetraodon nigroviridis	44.28	1.00e-100	358.00
IUUC-Tca-121347	Theobroma cacao	40.38	2.00e-99	354.00
IUUC-Tre-122018	Trichoderma reesei	51.12	2.00e-121	427.00
IUUC-Tvi-122413	Trichoderma virens	50.62	4.00e-119	419.00
IUUC-Tae-123191	Triticum aestivum	41.90	5.00e-96	343.00
IUUC-Tme-127077	Tuber melanosporum	59.16	3.00e-136	476.00
IUUC-Tbe-127744	Tupaia belangeri	39.83	5.00e-49	187.00
IUUC-Ttr-128777	Tursiops truncatus	38.29	1.00e-70	259.00
IUUC-Uma-129568	Ustilago maydis	41.21	2.00e-94	338.00
IUUC-Vda-129834	Verticillium dahliae	51.12	7.00e-119	418.00
IUUC-Vvi-131360	Vitis vinifera	40.21	1.00e-98	352.00
IUUC-Xtr-132630	Xenopus tropicalis	44.03	3.00e-99	355.00
IUUC-Xma-133665	Xiphophorus maculatus	44.03	6.00e-100	356.00
IUUC-Yli-134556	Yarrowia lipolytica	43.15	5.00e-101	359.00
IUUC-Zma-135787	Zea mays	42.43	8.00e-99	352.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence