iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
ULD/UDP/UFD/MUB	MUB	20086187; 21764993; 25320573

Classification

Family	E-value	Score	Start	End
UBD/Alpha-Helix/UBA	7.90e-15	55.3	359	392
ULD/UDP/UBQ/UBQ_PIM	2.10e-15	57.3	19	72

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 5    dkleqlveMGFdreealqaLraannnleaAveyL 38
           ++le lv+ G+ re+a + Lr++ n+++ A++ L
   Q: 359  QMLERLVSIGYARELAAESLRRNENDIQKALDIL 392
           79******************************99 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 19   eddtveelKekiakesgvppeqqkLIyaGkiLkDdt....tLselgikdgsvvh 68
           e++t+++l++++ak+sg++pe++kLI+aGkiLkDd     tLs+lgik++s+++
   Q: 19   ENWTLNMLRDEVAKRSGLDPESIKLIFAGKILKDDGdatlTLSQLGIKENSKIL 72
           79*********************************99***************96 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MAKLKVAGTW GGILEVELEN WTLNMLRDEV AKRSGLDPES IKLIFAGKIL KDDGDATLTL 60
SQLGIKENSK ILSCRQAAPE EGKSIMAEEE RARRLSRVKA AATALSKRHA DGSLPIQDYN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATAAAGTTAG TATCGGAGAC TAATAAACAC AAGTAAACTA TACGACTTCT CGAAAACCTA 60
GTTGCTCAAA CTCATCAATG GCGAAACTAA AGGTTGCTGG TACATGGGGA GGCATACTTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00240--ubiquitin

SMART

SM00165--UBA

KEGG

ath:AT2G12550

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000706	Aegilops tauschii	52.14	3.00e-104	371.00
IUUC-Aml-002011	Ailuropoda melanoleuca	24.48	1.00e-27	117.00
IUUC-Atr-002685	Amborella trichopoda	47.96	6.00e-158	550.00
IUUC-Apl-003818	Anas platyrhynchos	25.00	1.00e-28	120.00
IUUC-Aca-004439	Anolis carolinensis	27.78	3.00e-23	102.00
IUUC-Aly-005796	Arabidopsis lyrata	90.37	0.00e+00	986.00
IUUC-Afl-008566	Aspergillus flavus	29.51	4.20e-02	33.50
IUUC-Ame-011290	Astyanax mexicanus	27.68	1.00e-24	107.00
IUUC-Bta-013446	Bos taurus	24.49	2.00e-28	119.00
IUUC-Bdi-014400	Brachypodium distachyon	45.90	1.00e-124	439.00
IUUC-Bol-015407	Brassica oleracea	78.94	0.00e+00	825.00
IUUC-Bra-017386	Brassica rapa	77.54	0.00e+00	819.00
IUUC-Cel-018648	Caenorhabditis elegans	42.31	9.00e-05	39.30
IUUC-Cja-018982	Callithrix jacchus	27.07	1.00e-28	120.00
IUUC-Cfa-020919	Canis familiaris	24.94	7.00e-29	121.00
IUUC-Cpo-021709	Cavia porcellus	25.06	7.00e-31	127.00
IUUC-Cre-023004	Chlamydomonas reinhardtii	35.22	3.00e-40	160.00
IUUC-Csa-023986	Chlorocebus sabaeus	24.53	6.00e-27	115.00
IUUC-Cho-024391	Choloepus hoffmanni	29.88	3.00e-22	98.60
IUUC-Cin-025227	Ciona intestinalis	26.51	6.00e-35	141.00
IUUC-Csv-026213	Ciona savignyi	26.92	4.00e-05	40.40
IUUC-Dre-028258	Danio rerio	26.98	2.00e-28	119.00
IUUC-Dno-029732	Dasypus novemcinctus	25.12	5.00e-29	122.00
IUUC-Dor-030896	Dipodomys ordii	26.01	4.00e-26	112.00
IUUC-Dme-031789	Drosophila melanogaster	28.73	2.00e-33	136.00
IUUC-Ete-032810	Echinops telfairi	30.26	3.00e-20	92.80
IUUC-Eca-033649	Equus caballus	24.94	5.00e-32	132.00
IUUC-Fca-035979	Felis catus	24.53	1.00e-27	117.00
IUUC-Fal-036708	Ficedula albicollis	26.17	2.00e-28	119.00
IUUC-Gmo-039174	Gadus morhua	28.95	2.00e-23	103.00
IUUC-Gga-040165	Gallus gallus	26.97	4.00e-30	125.00
IUUC-Gac-042269	Gasterosteus aculeatus	27.60	2.00e-19	89.70
IUUC-Gma-043420	Glycine max	55.95	2.00e-159	555.00
IUUC-Ggo-045525	Gorilla gorilla	25.47	3.00e-30	125.00
IUUC-Hsa-046456	Homo sapiens	25.71	1.00e-28	120.00
IUUC-Hvu-047099	Hordeum vulgare	52.67	1.00e-104	372.00
IUUC-Itr-048763	Ictidomys tridecemlineatus	25.06	8.00e-27	114.00
IUUC-Lch-049579	Latimeria chalumnae	28.62	5.00e-22	98.60
IUUC-Lpe-051485	Leersia perrieri	54.68	4.00e-129	454.00
IUUC-Loc-051974	Lepisosteus oculatus	27.70	3.00e-37	149.00
IUUC-Laf-053661	Loxodonta africana	25.64	3.00e-31	129.00
IUUC-Mcc-054599	Macaca mulatta	24.29	2.00e-26	113.00
IUUC-Meu-055935	Macropus eugenii	24.62	4.00e-29	122.00
IUUC-Mtr-058497	Medicago truncatula	56.61	3.00e-163	567.00
IUUC-Mga-059711	Meleagris gallopavo	27.18	3.00e-30	125.00
IUUC-Mmr-061079	Microcebus murinus	25.06	5.00e-28	118.00
IUUC-Mdo-062991	Monodelphis domestica	25.06	2.00e-30	126.00
IUUC-Mmu-064280	Mus musculus	25.39	3.00e-26	112.00
IUUC-Mac-064485	Musa acuminata	48.75	7.00e-154	536.00
IUUC-Mpu-066376	Mustela putorius furo	25.06	1.00e-28	120.00
IUUC-Mlu-067808	Myotis lucifugus	24.49	4.00e-31	129.00
IUUC-Nle-069384	Nomascus leucogenys	25.00	1.00e-31	130.00
IUUC-Ont-071237	Oreochromis niloticus	25.46	4.00e-22	99.00
IUUC-Oan-073241	Ornithorhynchus anatinus	25.47	6.00e-27	115.00
IUUC-Ocu-074372	Oryctolagus cuniculus	24.40	3.00e-28	119.00
IUUC-Oba-075604	Oryza barthii	54.20	3.00e-127	447.00
IUUC-Obr-076272	Oryza brachyantha	54.61	7.00e-124	436.00
IUUC-Ogl-077860	Oryza glaberrima	54.20	3.00e-127	447.00
IUUC-Ogu-078907	Oryza glumaepatula	54.20	2.00e-127	448.00
IUUC-Oin-079073	Oryza indica	53.96	5.00e-127	447.00
IUUC-Olo-080884	Oryza longistaminata	54.50	2.00e-116	411.00
IUUC-Ome-081393	Oryza meridionalis	46.29	9.00e-128	449.00
IUUC-Oni-082606	Oryza nivara	53.96	6.00e-127	447.00
IUUC-Opu-083514	Oryza punctata	54.74	1.00e-125	442.00
IUUC-Oru-084709	Oryza rufipogon	54.20	3.00e-127	448.00
IUUC-Osa-085543	Oryza sativa	53.66	4.00e-07	46.60
IUUC-Ola-086447	Oryzias latipes	29.60	1.00e-22	100.00
IUUC-Oga-087931	Otolemur garnettii	25.06	9.00e-28	117.00
IUUC-Oar-090452	Ovis aries	24.82	5.00e-27	115.00
IUUC-Ptr-091538	Pan troglodytes	26.75	7.00e-28	118.00
IUUC-Pan-092411	Papio anubis	24.29	2.00e-26	114.00
IUUC-Psi-093867	Pelodiscus sinensis	29.41	4.00e-26	112.00
IUUC-Pma-094370	Petromyzon marinus	27.68	2.00e-33	136.00
IUUC-Ppa-096000	Physcomitrella patens	45.55	1.00e-115	409.00
IUUC-Pfo-097368	Poecilia formosa	27.00	5.00e-24	105.00
IUUC-Pab-097956	Pongo abelii	25.00	2.00e-28	120.00
IUUC-Pop-099788	Populus trichocarpa	56.52	4.00e-166	577.00
IUUC-Pca-100209	Procavia capensis	27.91	1.00e-05	44.70
IUUC-Ppe-101943	Prunus persica	56.58	1.00e-159	555.00
IUUC-Pva-102894	Pteropus vampyrus	26.09	3.00e-23	102.00
IUUC-Rno-105948	Rattus norvegicus	25.39	3.00e-23	102.00
IUUC-Sha-106803	Sarcophilus harrisii	23.98	4.00e-09	54.70
IUUC-Sja-107947	Schizosaccharomyces japonicus	50.00	1.50e-01	30.80
IUUC-Spo-108116	Schizosaccharomyces pombe	38.10	5.00e-05	40.00
IUUC-Smo-109087	Selaginella moellendorffii	40.21	4.00e-102	364.00
IUUC-Sit-110238	Setaria italica	52.40	5.00e-106	377.00
IUUC-Sly-111808	Solanum lycopersicum	56.81	4.00e-169	587.00
IUUC-Stu-112555	Solanum tuberosum	56.64	6.00e-176	609.00
IUUC-Sar-113510	Sorex araneus	25.00	1.00e-14	74.30
IUUC-Sbi-113830	Sorghum bicolor	53.85	2.00e-115	408.00
IUUC-Ssc-116283	Sus scrofa	25.24	2.00e-27	116.00
IUUC-Tgu-116651	Taeniopygia guttata	26.17	1.00e-27	117.00
IUUC-Tru-118492	Takifugu rubripes	25.64	3.00e-23	102.00
IUUC-Tsy-119635	Tarsius syrichta	25.16	2.00e-24	106.00
IUUC-Tni-120691	Tetraodon nigroviridis	24.66	2.00e-25	110.00
IUUC-Tca-121143	Theobroma cacao	61.28	2.00e-156	545.00
IUUC-Tae-122695	Triticum aestivum	44.35	2.00e-123	435.00
IUUC-Tur-126180	Triticum urartu	51.16	1.00e-08	52.40
IUUC-Tbe-127414	Tupaia belangeri	25.06	3.00e-23	102.00
IUUC-Ttr-128330	Tursiops truncatus	23.86	3.00e-26	112.00
IUUC-Vda-129693	Verticillium dahliae	25.71	2.00e-03	37.40
IUUC-Vpa-130210	Vicugna pacos	27.74	7.00e-27	114.00
IUUC-Vvi-131180	Vitis vinifera	53.00	8.00e-160	556.00
IUUC-Xtr-132695	Xenopus tropicalis	25.67	3.00e-25	109.00
IUUC-Xma-134255	Xiphophorus maculatus	26.97	3.00e-23	102.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence