iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress	GXD
DNA & RNA Element
miRTarBase	microRNA	TRANSFAC	RAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
dbPAF	PhosphositePlus
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.40e-18	66.6	235	277

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf......sdtllvsGsdDgtikvW.Dlrtgvllk 37
           gH ++v+++++      s ++l+s+s D+t kvW  +++g++l+
   Q: 235  GHRGPVNSIQWcpvfckS-HMLLSASMDKTFKVWnAVDSGHCLQ 277
           8*************9643.9**************8888888877 PP

Organism

Mus musculus

Protein Sequence
(Fasta)

MASLVAYDDS DSETEADPAR SGDAAGQISD ASGMSRPSGM GFASSTVGVT KEGAQHTGNS 60
PNEDPGMQRL PLARLWRSDP GSCPSQRLQW PSKEPDTTFP PSEPPRPSLW MSRAPVGHVP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAGTGCTGGC CGGACCGTTG TAGGGGTGGA CCAAGAGCTT CCGTGTGTGT GTGTGTGTGG 60
TGAGCGGCGG GCCCGGGAGG GAGGGGGCCG GGATGTGGCG GCCGCATGCT TCTCGCTTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR003143--Cyt_cd1_C
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

KEGG

mmu:212198

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001588	Ailuropoda melanoleuca	76.44	0.00e+00	805.00
IUUC-Atr-003155	Amborella trichopoda	36.51	4.00e-64	238.00
IUUC-Apl-003544	Anas platyrhynchos	68.25	4.00e-88	317.00
IUUC-Aly-006510	Arabidopsis lyrata	35.14	1.00e-65	243.00
IUUC-Ath-007329	Arabidopsis thaliana	36.31	4.00e-67	248.00
IUUC-Ame-010607	Astyanax mexicanus	58.11	2.00e-73	268.00
IUUC-Bta-013542	Bos taurus	73.84	0.00e+00	769.00
IUUC-Bdi-014736	Brachypodium distachyon	35.91	1.00e-66	247.00
IUUC-Bol-016112	Brassica oleracea	36.74	2.00e-67	249.00
IUUC-Bra-016685	Brassica rapa	37.06	3.00e-67	248.00
IUUC-Cja-018883	Callithrix jacchus	77.65	0.00e+00	801.00
IUUC-Cfa-021278	Canis familiaris	75.51	0.00e+00	795.00
IUUC-Cpo-022449	Cavia porcellus	81.87	4.00e-171	593.00
IUUC-Csa-023916	Chlorocebus sabaeus	78.73	0.00e+00	818.00
IUUC-Cin-025210	Ciona intestinalis	33.98	3.00e-39	155.00
IUUC-Csv-026371	Ciona savignyi	32.78	1.00e-40	160.00
IUUC-Dno-029053	Dasypus novemcinctus	60.70	8.00e-105	373.00
IUUC-Dor-030299	Dipodomys ordii	69.44	5.00e-136	477.00
IUUC-Ete-032974	Echinops telfairi	44.63	6.00e-69	254.00
IUUC-Eca-033484	Equus caballus	74.03	0.00e+00	781.00
IUUC-Fca-035673	Felis catus	76.81	0.00e+00	787.00
IUUC-Fal-036795	Ficedula albicollis	67.89	1.00e-140	492.00
IUUC-Gmo-039062	Gadus morhua	56.78	3.00e-92	331.00
IUUC-Gga-040773	Gallus gallus	68.75	2.00e-116	411.00
IUUC-Gac-042364	Gasterosteus aculeatus	57.93	4.00e-94	337.00
IUUC-Gma-043100	Glycine max	38.10	6.00e-64	238.00
IUUC-Ggo-045220	Gorilla gorilla	78.54	0.00e+00	811.00
IUUC-Hsa-046511	Homo sapiens	78.92	0.00e+00	817.00
IUUC-Hvu-047431	Hordeum vulgare	36.77	1.00e-63	236.00
IUUC-Lch-049590	Latimeria chalumnae	66.42	4.00e-110	390.00
IUUC-Lpe-050810	Leersia perrieri	37.78	9.00e-51	194.00
IUUC-Loc-052196	Lepisosteus oculatus	53.07	1.00e-121	429.00
IUUC-Laf-053481	Loxodonta africana	69.53	8.00e-134	469.00
IUUC-Mcc-055622	Macaca mulatta	77.99	0.00e+00	810.00
IUUC-Meu-055978	Macropus eugenii	35.55	2.00e-37	149.00
IUUC-Mtr-058041	Medicago truncatula	38.17	2.00e-63	236.00
IUUC-Mga-060149	Meleagris gallopavo	68.90	3.00e-89	320.00
IUUC-Mmr-061552	Microcebus murinus	74.86	0.00e+00	772.00
IUUC-Mdo-061969	Monodelphis domestica	50.62	4.00e-152	531.00
IUUC-Mac-065079	Musa acuminata	36.42	7.00e-58	218.00
IUUC-Mpu-065949	Mustela putorius furo	75.73	0.00e+00	690.00
IUUC-Mlu-067523	Myotis lucifugus	73.45	0.00e+00	659.00
IUUC-Nle-069645	Nomascus leucogenys	74.16	1.00e-165	576.00
IUUC-Ont-072361	Oreochromis niloticus	49.87	5.00e-112	398.00
IUUC-Ocu-074916	Oryctolagus cuniculus	70.89	1.00e-140	493.00
IUUC-Oba-075367	Oryza barthii	37.37	3.00e-58	219.00
IUUC-Obr-076738	Oryza brachyantha	37.82	4.00e-63	235.00
IUUC-Ogu-078590	Oryza glumaepatula	37.37	3.00e-58	219.00
IUUC-Oin-079678	Oryza indica	37.62	2.00e-63	236.00
IUUC-Olo-080453	Oryza longistaminata	37.55	2.00e-61	229.00
IUUC-Ome-081794	Oryza meridionalis	39.92	6.00e-53	201.00
IUUC-Oni-082432	Oryza nivara	37.62	2.00e-63	236.00
IUUC-Opu-083897	Oryza punctata	37.70	2.00e-63	236.00
IUUC-Oru-085068	Oryza rufipogon	35.95	3.00e-56	212.00
IUUC-Osa-085805	Oryza sativa	37.62	2.00e-63	236.00
IUUC-Ola-087567	Oryzias latipes	56.25	7.00e-93	333.00
IUUC-Oga-088168	Otolemur garnettii	76.87	0.00e+00	785.00
IUUC-Oar-090158	Ovis aries	67.10	0.00e+00	633.00
IUUC-Ptr-090913	Pan troglodytes	68.66	0.00e+00	703.00
IUUC-Pan-092157	Papio anubis	79.10	0.00e+00	824.00
IUUC-Psi-093817	Pelodiscus sinensis	69.12	2.00e-117	414.00
IUUC-Pma-094263	Petromyzon marinus	55.87	1.00e-56	212.00
IUUC-Ppa-095302	Physcomitrella patens	37.66	2.00e-65	243.00
IUUC-Pfo-097526	Poecilia formosa	51.14	4.00e-113	401.00
IUUC-Pab-098152	Pongo abelii	77.89	0.00e+00	757.00
IUUC-Pop-099987	Populus trichocarpa	39.56	7.00e-71	261.00
IUUC-Pca-100527	Procavia capensis	60.38	8.00e-99	354.00
IUUC-Ppe-101575	Prunus persica	35.37	1.00e-66	246.00
IUUC-Pva-102942	Pteropus vampyrus	73.84	0.00e+00	768.00
IUUC-Rno-104857	Rattus norvegicus	94.02	0.00e+00	979.00
IUUC-Sha-106763	Sarcophilus harrisii	49.47	4.00e-155	541.00
IUUC-Sit-110488	Setaria italica	38.46	3.00e-64	239.00
IUUC-Sly-110893	Solanum lycopersicum	36.57	8.00e-62	231.00
IUUC-Stu-112566	Solanum tuberosum	35.92	3.00e-60	226.00
IUUC-Sar-113617	Sorex araneus	57.66	1.00e-119	423.00
IUUC-Sbi-114566	Sorghum bicolor	36.74	7.00e-65	241.00
IUUC-Tgu-117015	Taeniopygia guttata	68.20	1.00e-140	492.00
IUUC-Tsy-119467	Tarsius syrichta	67.21	2.00e-119	421.00
IUUC-Tca-121587	Theobroma cacao	36.74	7.00e-65	241.00
IUUC-Tae-123717	Triticum aestivum	36.39	7.00e-64	238.00
IUUC-Tbe-127502	Tupaia belangeri	66.79	0.00e+00	642.00
IUUC-Ttr-129033	Tursiops truncatus	76.87	0.00e+00	788.00
IUUC-Vvi-131505	Vitis vinifera	36.01	4.00e-66	245.00
IUUC-Xtr-132851	Xenopus tropicalis	61.54	5.00e-79	286.00
IUUC-Xma-133463	Xiphophorus maculatus	49.87	1.00e-110	393.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence