iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bol-016099

Ensembl Protein ID

Bo4g024400.1

UniProt Accession

A0A0D3BQ12; A0A0D3BQ12_BRAOL

Protein Name

Ribosome biogenesis protein BOP1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bo4g024400	Bo4g024400.1	Bo4g024400.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-13	52.4	394	432

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgvllk 37
           gHt+ vt+++   s+  ++sGs Dg++++W++ tg++lk
   Q: 394  GHTGAVTSVSPdcSGQWIASGSADGSVRIWEVETGRCLK 432
           8*********9966699********************97 PP

Organism

Brassica oleracea

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MTKKKSEGAN EDQTIETKKK SVSAVKSQKE KPVVAKQSLS GSLNSDDFDS DVFDSEDDAS 60
QRETEGGGKD SSEDELELHG HEGSDDDDEG EQVDSENEGS EEREVAEESD SSEDEVAPRN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGACGAAGA AGAAGAGCGA AGGAGCTAAC GAAGATCAAA CGATAGAAAC CAAGAAGAAA 60
AGCGTCTCCG CTGTAAAATC TCAGAAAGAG AAGCCAGTAG TAGCAAAGCA AGTGAAAAGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR028598--BOP1/Erb1
IPR012953--BOP1_N_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08145--BOP1NT
PF00400--WD40

SMART

SM01035--BOP1NT
SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001158	Aegilops tauschii	61.14	0.00e+00	714.00
IUUC-Aml-001507	Ailuropoda melanoleuca	43.11	4.00e-140	491.00
IUUC-Atr-003141	Amborella trichopoda	62.53	1.00e-157	549.00
IUUC-Apl-003545	Anas platyrhynchos	42.18	1.00e-122	432.00
IUUC-Aly-005649	Arabidopsis lyrata	77.79	0.00e+00	1121.00
IUUC-Ath-007625	Arabidopsis thaliana	77.35	0.00e+00	1095.00
IUUC-Ago-007958	Ashbya gossypii	39.88	3.00e-136	479.00
IUUC-Acl-008344	Aspergillus clavatus	41.84	3.00e-124	439.00
IUUC-Afl-008616	Aspergillus flavus	40.74	4.00e-125	442.00
IUUC-Afu-009083	Aspergillus fumigatus	41.84	1.00e-118	420.00
IUUC-Ani-009365	Aspergillus nidulans	41.44	6.00e-129	454.00
IUUC-Ang-009796	Aspergillus niger	40.34	2.00e-118	419.00
IUUC-Aor-010015	Aspergillus oryzae	40.74	4.00e-125	442.00
IUUC-Ate-010537	Aspergillus terreus	39.60	4.00e-127	448.00
IUUC-Ame-011767	Astyanax mexicanus	50.92	3.00e-63	234.00
IUUC-Bgr-012286	Blumeria graminis	42.08	1.00e-134	473.00
IUUC-Bta-013569	Bos taurus	45.88	1.00e-150	526.00
IUUC-Bci-013820	Botrytis cinerea	40.52	3.00e-126	445.00
IUUC-Bdi-014895	Brachypodium distachyon	65.47	0.00e+00	836.00
IUUC-Bra-017174	Brassica rapa	99.51	0.00e+00	1290.00
IUUC-Cel-018201	Caenorhabditis elegans	39.94	1.00e-122	433.00
IUUC-Cja-019009	Callithrix jacchus	40.33	3.00e-130	458.00
IUUC-Cfa-020173	Canis familiaris	40.52	6.00e-141	494.00
IUUC-Cpo-021796	Cavia porcellus	44.89	9.00e-151	526.00
IUUC-Cre-022650	Chlamydomonas reinhardtii	48.98	4.00e-169	587.00
IUUC-Csa-023440	Chlorocebus sabaeus	44.08	2.00e-153	535.00
IUUC-Cho-024318	Choloepus hoffmanni	24.05	1.00e-06	48.50
IUUC-Cin-025782	Ciona intestinalis	43.56	3.00e-143	501.00
IUUC-Csv-026352	Ciona savignyi	43.45	4.00e-145	508.00
IUUC-Cgl-026393	Colletotrichum gloeosporioides	37.35	2.00e-105	376.00
IUUC-Cne-027004	Cryptococcus neoformans	42.45	6.00e-149	521.00
IUUC-Cme-027242	Cyanidioschyzon merolae	35.36	2.00e-107	383.00
IUUC-Dre-028658	Danio rerio	45.97	2.00e-159	555.00
IUUC-Dno-028883	Dasypus novemcinctus	45.06	1.00e-152	533.00
IUUC-Dor-031031	Dipodomys ordii	43.12	8.00e-155	540.00
IUUC-Dse-031443	Dothistroma septosporum	37.79	1.00e-120	426.00
IUUC-Dme-031786	Drosophila melanogaster	43.06	4.00e-151	528.00
IUUC-Ete-032566	Echinops telfairi	24.05	7.00e-07	49.30
IUUC-Eca-033677	Equus caballus	45.06	6.00e-151	527.00
IUUC-Eeu-035310	Erinaceus europaeus	41.15	4.00e-110	391.00
IUUC-Fca-035888	Felis catus	44.01	2.00e-149	522.00
IUUC-Fal-037438	Ficedula albicollis	44.49	7.00e-125	440.00
IUUC-Fox-037973	Fusarium oxysporum	41.25	4.00e-141	495.00
IUUC-Fso-038187	Fusarium solani	40.65	2.00e-137	483.00
IUUC-Gmo-039114	Gadus morhua	42.38	2.00e-137	482.00
IUUC-Ggr-039746	Gaeumannomyces graminis	39.44	3.00e-137	482.00
IUUC-Gga-040631	Gallus gallus	45.00	3.00e-83	301.00
IUUC-Gac-042582	Gasterosteus aculeatus	44.81	1.00e-146	513.00
IUUC-Gma-044215	Glycine max	68.50	0.00e+00	927.00
IUUC-Ggo-045587	Gorilla gorilla	43.92	2.00e-152	532.00
IUUC-Hsa-046319	Homo sapiens	43.92	1.00e-152	533.00
IUUC-Hvu-047526	Hordeum vulgare	65.10	0.00e+00	821.00
IUUC-Itr-048683	Ictidomys tridecemlineatus	44.55	2.00e-150	526.00
IUUC-Kpa-049221	Komagataella pastoris	40.30	2.00e-126	446.00
IUUC-Lch-049640	Latimeria chalumnae	46.10	1.00e-161	563.00
IUUC-Lpe-051135	Leersia perrieri	63.36	0.00e+00	769.00
IUUC-Loc-051930	Lepisosteus oculatus	47.33	8.00e-164	570.00
IUUC-Lma-053290	Leptosphaeria maculans	40.86	1.00e-128	453.00
IUUC-Laf-053903	Loxodonta africana	42.31	1.00e-133	470.00
IUUC-Mcc-055471	Macaca mulatta	42.81	3.00e-152	531.00
IUUC-Meu-056190	Macropus eugenii	44.89	3.00e-151	528.00
IUUC-Mor-057135	Magnaporthe oryzae	40.71	7.00e-129	454.00
IUUC-Mpo-057475	Magnaporthe poae	38.97	6.00e-128	451.00
IUUC-Mtr-058689	Medicago truncatula	65.82	0.00e+00	858.00
IUUC-Mla-059149	Melampsora laricipopulina	44.03	1.00e-142	499.00
IUUC-Mga-059645	Meleagris gallopavo	39.68	1.00e-46	179.00
IUUC-Mvi-060485	Microbotryum violaceum	41.14	1.00e-124	441.00
IUUC-Mmr-061674	Microcebus murinus	44.41	2.00e-148	518.00
IUUC-Mdo-062973	Monodelphis domestica	43.63	9.00e-157	547.00
IUUC-Mmu-064180	Mus musculus	42.40	2.00e-154	539.00
IUUC-Mac-064535	Musa acuminata	50.32	0.00e+00	724.00
IUUC-Mpu-066406	Mustela putorius furo	45.40	2.00e-156	545.00
IUUC-Mlu-067795	Myotis lucifugus	45.22	4.00e-146	511.00
IUUC-Nfi-068516	Neosartorya fischeri	39.94	6.00e-114	404.00
IUUC-Ncr-068767	Neurospora crassa	40.71	4.00e-122	432.00
IUUC-Ont-071614	Oreochromis niloticus	45.40	2.00e-157	548.00
IUUC-Oba-075980	Oryza barthii	63.52	0.00e+00	776.00
IUUC-Obr-076799	Oryza brachyantha	66.07	0.00e+00	839.00
IUUC-Ogl-077134	Oryza glaberrima	65.74	0.00e+00	819.00
IUUC-Ogu-078655	Oryza glumaepatula	63.95	0.00e+00	798.00
IUUC-Oin-079654	Oryza indica	65.74	0.00e+00	819.00
IUUC-Olo-080706	Oryza longistaminata	63.52	0.00e+00	778.00
IUUC-Oni-082508	Oryza nivara	63.19	0.00e+00	778.00
IUUC-Opu-083707	Oryza punctata	63.68	0.00e+00	779.00
IUUC-Oru-084453	Oryza rufipogon	63.52	0.00e+00	778.00
IUUC-Osa-085811	Oryza sativa	65.58	0.00e+00	818.00
IUUC-Ola-087361	Oryzias latipes	47.28	6.00e-163	567.00
IUUC-Oga-088015	Otolemur garnettii	44.08	3.00e-153	535.00
IUUC-Pan-092306	Papio anubis	44.01	9.00e-152	530.00
IUUC-Psi-093799	Pelodiscus sinensis	24.81	7.00e-08	52.80
IUUC-Pma-094622	Petromyzon marinus	45.04	4.00e-157	547.00
IUUC-Pno-094794	Phaeosphaeria nodorum	38.64	1.00e-118	420.00
IUUC-Ppa-095528	Physcomitrella patens	57.27	4.00e-147	514.00
IUUC-Pfo-096682	Poecilia formosa	45.34	2.00e-155	543.00
IUUC-Pab-097939	Pongo abelii	43.16	2.00e-134	472.00
IUUC-Pop-099043	Populus trichocarpa	73.05	0.00e+00	861.00
IUUC-Pca-100333	Procavia capensis	45.79	2.00e-156	546.00
IUUC-Ppe-102078	Prunus persica	69.33	0.00e+00	867.00
IUUC-Pgr-103525	Puccinia graminis	43.64	2.00e-131	463.00
IUUC-Ptt-103929	Puccinia triticina	43.91	7.00e-128	451.00
IUUC-Pte-104029	Pyrenophora teres	40.52	2.00e-137	482.00
IUUC-Pyt-104446	Pyrenophora triticirepentis	40.52	9.00e-137	480.00
IUUC-Rno-105248	Rattus norvegicus	45.22	4.00e-154	538.00
IUUC-Sce-106381	Saccharomyces cerevisiae	39.08	4.00e-132	465.00
IUUC-Sha-106519	Sarcophilus harrisii	45.71	2.00e-158	551.00
IUUC-Sja-107908	Schizosaccharomyces japonicus	41.20	1.00e-129	456.00
IUUC-Spo-108071	Schizosaccharomyces pombe	40.18	2.00e-127	449.00
IUUC-Smo-109604	Selaginella moellendorffii	59.15	0.00e+00	723.00
IUUC-Sit-109742	Setaria italica	66.45	0.00e+00	857.00
IUUC-Sly-110970	Solanum lycopersicum	74.62	2.00e-160	558.00
IUUC-Stu-112593	Solanum tuberosum	70.59	0.00e+00	941.00
IUUC-Sar-113123	Sorex araneus	40.25	5.00e-61	227.00
IUUC-Sbi-113945	Sorghum bicolor	66.56	0.00e+00	856.00
IUUC-Sre-115188	Sporisorium reilianum	37.57	7.00e-127	447.00
IUUC-Ssc-115352	Sus scrofa	43.92	3.00e-153	535.00
IUUC-Tru-117685	Takifugu rubripes	47.05	2.00e-160	559.00
IUUC-Tsy-119545	Tarsius syrichta	24.05	5.00e-07	50.10
IUUC-Tni-119982	Tetraodon nigroviridis	46.46	3.00e-154	538.00
IUUC-Tca-121664	Theobroma cacao	74.28	0.00e+00	1007.00
IUUC-Tre-122229	Trichoderma reesei	41.24	1.00e-123	436.00
IUUC-Tvi-122576	Trichoderma virens	40.94	2.00e-124	439.00
IUUC-Tae-124110	Triticum aestivum	65.69	0.00e+00	786.00
IUUC-Tur-126781	Triticum urartu	61.14	0.00e+00	696.00
IUUC-Tme-127080	Tuber melanosporum	44.19	2.00e-153	535.00
IUUC-Uma-129556	Ustilago maydis	38.47	3.00e-125	442.00
IUUC-Vda-129715	Verticillium dahliae	39.94	1.00e-128	453.00
IUUC-Vvi-131211	Vitis vinifera	70.44	0.00e+00	942.00
IUUC-Xma-133883	Xiphophorus maculatus	45.54	2.00e-150	526.00
IUUC-Yli-134438	Yarrowia lipolytica	40.12	8.00e-123	434.00
IUUC-Zma-135341	Zea mays	58.87	0.00e+00	782.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence