iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Cja-019698

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

E3 ubiquitin-protein ligase TRIM56

Genbank Nucleotide ID

ACFV01133639

Gene Name

TRIM56

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSCJAG00000015951.2	ENSCJAT00000031035.2	ENSCJAP00000029370.2

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	94.57	0.00e+00	1278.00	IUUC-Hsa-046238
E3 activity/RING/RING	80.16	0.00e+00	1048.00	IUUC-Mmu-064375

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Callithrix jacchus

Protein Sequence
(Fasta)

MVSHGSSPSL LEALSSDFLA CKICLEQLRA PKTLPCLHTY CQDCLAQLAD GGHVRCPECR 60
ETVPVPPEGV AAFKTNFFVN GLLDLVKARA CGDLRAGKPA CALCPLVGGT SAGGPATARC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTTTCCC ATGGGTCCTC GCCCTCCCTC CTAGAGGCCC TGAGCAGCGA CTTCCTGGCC 60
TGTAAAATCT GCCTGGAGCA GCTGCGGGCA CCCAAGACCC TGCCCTGCCT GCATACCTAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0436--Ligase
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR027370--Znf-RING_LisH
IPR000315--Znf_B-box
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS50119--ZF_BBOX
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00643--zf-B_box
PF13445--zf-RING_UBOX

SMART

SM00336--BBOX
SM00184--RING

Gene Ontology

GO:0005622--C:intracellular
GO:0016874--F:ligase activity
GO:0003723--F:RNA binding
GO:0008270--F:zinc ion binding

KEGG

cjc:100386123

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001496	Ailuropoda melanoleuca	89.36	0.00e+00	1169.00
IUUC-Aca-004996	Anolis carolinensis	54.96	3.00e-76	279.00
IUUC-Bta-012368	Bos taurus	85.96	0.00e+00	1167.00
IUUC-Csa-023090	Chlorocebus sabaeus	94.97	0.00e+00	1216.00
IUUC-Dno-030051	Dasypus novemcinctus	80.60	0.00e+00	1001.00
IUUC-Ete-032312	Echinops telfairi	88.02	2.00e-93	334.00
IUUC-Eca-033253	Equus caballus	93.01	1.00e-108	386.00
IUUC-Eeu-034772	Erinaceus europaeus	79.71	4.00e-52	197.00
IUUC-Fca-036198	Felis catus	78.17	0.00e+00	967.00
IUUC-Ggo-045486	Gorilla gorilla	94.57	0.00e+00	1213.00
IUUC-Hsa-046238	Homo sapiens	94.57	0.00e+00	1212.00
IUUC-Itr-048481	Ictidomys tridecemlineatus	87.68	0.00e+00	1123.00
IUUC-Loc-052915	Lepisosteus oculatus	40.62	2.00e-55	210.00
IUUC-Laf-053640	Loxodonta africana	85.30	0.00e+00	1075.00
IUUC-Mcc-055540	Macaca mulatta	95.10	0.00e+00	1231.00
IUUC-Mmr-060840	Microcebus murinus	90.07	0.00e+00	1177.00
IUUC-Mmu-064375	Mus musculus	79.76	0.00e+00	1058.00
IUUC-Mpu-066797	Mustela putorius furo	87.42	0.00e+00	1148.00
IUUC-Mlu-067996	Myotis lucifugus	88.07	0.00e+00	1171.00
IUUC-Nle-069238	Nomascus leucogenys	97.43	9.00e-125	439.00
IUUC-Oga-089156	Otolemur garnettii	85.71	0.00e+00	1176.00
IUUC-Oar-090056	Ovis aries	81.53	0.00e+00	1052.00
IUUC-Ptr-090837	Pan troglodytes	93.18	0.00e+00	743.00
IUUC-Psi-093493	Pelodiscus sinensis	46.21	1.00e-59	224.00
IUUC-Pab-097607	Pongo abelii	95.36	0.00e+00	1250.00
IUUC-Pva-102758	Pteropus vampyrus	85.30	0.00e+00	1118.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence