iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

   S: 1    gHtdsvtclaf.....sdtllvsGsdDgtikvWD 29
           gHt+ vt++af     s   l+s+sdDgt+++WD
   Q: 318  GHTGAVTAIAFsprqaSVYQLLSSSDDGTCRIWD 351
           8**********998743377************** PP

UBD/Beta-Prp

   S: 2    iktlkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvls 99
           ik+l+gh+ +v +   f +++++++tgs+d+ +k+w+++t  +l+s  ghe+ +t++  s++  + +++s+D +i+vw l +g ++++l+gh+  v++
   Q: 229  IKKLRGHRNAVYC-AIFDRSGRYVITGSDDRLVKIWSMETALCLASCRGHEGDITDLAVSSNNALVASASNDFVIRVWRLPDGMPISVLRGHTGAVTA 325
           5678888887666.999********************************************************************************* PP
   S: 100  lsfsp...sgdklvsGshdrtirvwdletgqclee........................tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl.... 166
           ++fsp   s + l+s s+d t r+wd +  q+l                           ++ +++ + c +++ +g ++v+Gs D+  r+W+     
   Q: 326  IAFSPrqaSVYQLLSSSDDGTCRIWDARYSQWLPRiyvpspsdantgestftssntgstSNASQSHQILCCAYNANGTIFVTGSSDSNARVWSAskpn 423
           *****986669***********************************************989999999**************************99999 PP
   S: 167  ..ktgkllrtl...tgghtdsvyslsfdsng..........................kelvsgsldgtvklwdlqtg 212
               ++  ++l   +g h+++v+ ++f+                               +v++s+dg+ ++w  ++ 
   Q: 424  ldDAEQPTHELdvlRG-HENDVNYVQFSGCAvapksstadalkedsypkfknswfchDNIVTCSRDGSAIIWTPRSR 499
           9966666666677577.*********776666666688888889999999999***9***************87755 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MDWIHKSTPF MEPSNLAKLV QGNVPLQPHD SHSSLTDLDM DLREVYFLIL HFLSIGPCER 60
TFGHLRDEIL EKGLLPRRYH SWWSRSGIYS GRADDDGISL PLSYDNLIER YPHIEKDHLV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTCTCAAAT TTGTATTTTC CAGATTTTCC AGAAAAATCT CACAGCGGTA AGAAAAAAAG 60
AAAAAGAAGA GTCAGTGGTC TTGTTGTTTC GTTCTTCCTT GTTCGCTCGA CCTGGCCGAT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR001487--Bromodomain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00439--Bromodomain
PF00400--WD40

SMART

SM00297--BROMO
SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0005634--C:nucleus
GO:0007010--P:cytoskeleton organization
GO:0008360--P:regulation of cell shape
GO:0006357--P:regulation of transcription from RNA polymerase II promoter

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001881	Ailuropoda melanoleuca	29.46	6.00e-73	269.00
IUUC-Aly-006517	Arabidopsis lyrata	93.96	0.00e+00	2719.00
IUUC-Bta-013217	Bos taurus	30.77	2.00e-75	278.00
IUUC-Bol-016525	Brassica oleracea	84.26	0.00e+00	2449.00
IUUC-Cfa-021037	Canis familiaris	31.07	1.00e-76	282.00
IUUC-Cpo-021934	Cavia porcellus	30.77	3.00e-76	281.00
IUUC-Cin-025702	Ciona intestinalis	35.14	3.00e-29	121.00
IUUC-Dme-031752	Drosophila melanogaster	26.92	1.00e-69	258.00
IUUC-Ete-032717	Echinops telfairi	30.02	6.00e-38	153.00
IUUC-Eca-034349	Equus caballus	30.47	4.00e-70	260.00
IUUC-Eeu-034871	Erinaceus europaeus	28.29	4.00e-41	164.00
IUUC-Fal-037307	Ficedula albicollis	30.51	3.00e-78	287.00
IUUC-Gma-042820	Glycine max	64.00	0.00e+00	1186.00
IUUC-Ggo-045500	Gorilla gorilla	30.92	4.00e-76	280.00
IUUC-Hvu-047706	Hordeum vulgare	73.60	2.00e-137	481.00
IUUC-Laf-053848	Loxodonta africana	30.58	5.00e-76	280.00
IUUC-Mcc-054638	Macaca mulatta	30.77	6.00e-76	280.00
IUUC-Mtr-057637	Medicago truncatula	67.03	0.00e+00	1123.00
IUUC-Mga-060165	Meleagris gallopavo	30.21	2.00e-75	278.00
IUUC-Mmr-061227	Microcebus murinus	30.77	1.00e-76	281.00
IUUC-Mac-065343	Musa acuminata	61.50	0.00e+00	1092.00
IUUC-Mlu-068082	Myotis lucifugus	29.46	4.00e-73	270.00
IUUC-Nle-069402	Nomascus leucogenys	30.62	1.00e-75	278.00
IUUC-Opr-070971	Ochotona princeps	25.45	4.00e-39	157.00
IUUC-Oan-072954	Ornithorhynchus anatinus	30.71	9.00e-80	292.00
IUUC-Ocu-074456	Oryctolagus cuniculus	30.98	8.00e-72	266.00
IUUC-Olu-087745	Ostreococcus lucimarinus	32.47	1.00e-76	281.00
IUUC-Oga-089053	Otolemur garnettii	29.46	2.00e-72	267.00
IUUC-Ptr-091213	Pan troglodytes	30.92	4.00e-76	280.00
IUUC-Psi-093271	Pelodiscus sinensis	32.08	8.00e-69	256.00
IUUC-Ppa-095793	Physcomitrella patens	56.26	0.00e+00	843.00
IUUC-Pop-099672	Populus trichocarpa	57.30	0.00e+00	1513.00
IUUC-Ppe-101283	Prunus persica	65.60	0.00e+00	1203.00
IUUC-Pva-102512	Pteropus vampyrus	29.46	7.00e-73	269.00
IUUC-Rno-105687	Rattus norvegicus	30.92	5.00e-76	280.00
IUUC-Sha-106680	Sarcophilus harrisii	30.72	7.00e-76	279.00
IUUC-Sit-110017	Setaria italica	51.00	0.00e+00	793.00
IUUC-Sly-111348	Solanum lycopersicum	62.34	0.00e+00	1097.00
IUUC-Sbi-114195	Sorghum bicolor	70.56	0.00e+00	812.00
IUUC-Tgu-116513	Taeniopygia guttata	30.63	2.00e-79	291.00
IUUC-Tsy-119003	Tarsius syrichta	28.83	4.00e-63	236.00
IUUC-Tca-121615	Theobroma cacao	74.72	0.00e+00	1207.00
IUUC-Tbe-127663	Tupaia belangeri	34.51	2.00e-30	129.00
IUUC-Ttr-128561	Tursiops truncatus	30.47	2.00e-71	265.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence