iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Vda-129716

Ensembl Protein ID

EGY14091

UniProt Accession

G2WQZ2; G2WQZ2_VERDV

Genbank Protein ID

EGY14091.1

Protein Name

Coatomer subunit beta'

Genbank Nucleotide ID

DS572695

Gene Name

VDAG_00773

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VDAG_00773	EGY14091	EGY14091

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.80e-29	99.1	186	219
UBD/Beta-Prp	1.30e-64	217.3	13	300

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 5    svtclaf...sd.tllvsGsdDgtikvWDlrtgv 34
           +v+ +++   sd ++l++ sdD t+kvWD++t  
   Q: 186  GVNYVDYyphSDkPYLLTTSDDRTVKVWDYTTKS 219
           6888998899999****************99876 PP

UBD/Beta-Prp

   S: 10   ksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklv 110
           +++++ ++f+p++++++t+ ++g + +w+++t++ +++++  + +v+a +f+ +++++v gs+D  ++v++++t++ + ++++h d++++++++p++ +++
   Q: 13   SERVKGIDFHPQEPWILTTLYSGHVYIWSYETQQIVKTFELTDVPVRAGRFIARKNWIVCGSDDFQLRVYNYNTSEKITSFEAHPDYIRAIAVHPTQPFVL 113
           678999*********************************************************************************************** PP
   S: 111  sGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsng..kelvsgsldgtvklwd 208
           ++s+d ti++wd+e+g++   +++gh + v++++++p++ n ++s++lDrtv++W+l + +   tl+   t+ v+ +++ + +  ++l++ s+d+tvk+wd
   Q: 114  TASDDMTIKLWDWEKGWKCVRVFEGHGHYVMGLAINPKDtNTFASACLDRTVKIWSLGSSTANFTLEAHETKGVNYVDYYPHSdkPYLLTTSDDRTVKVWD 214
           ****************98888***********************************************99********8887777**************** PP
   S: 209  lqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwklkk 296
           + t++ + tl+ght+nv+    +p+   ++sgs+Dg++r+W   +  + ++l++  ++ ++v++   +++  v++++d+ + + kl +
   Q: 215  YTTKSLIATLEGHTNNVSWACYHPELPVIISGSEDGTVRLWHANTYRFEQVLNYGLERAWCVSY--QKGKQGVAVGFDDGLVVVKLGR 300
           ***************************************************************9..6677777777766666667765 PP

Organism

Verticillium dahliae

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MRIDVKRQLF ARSERVKGID FHPQEPWILT TLYSGHVYIW SYETQQIVKT FELTDVPVRA 60
GRFIARKNWI VCGSDDFQLR VYNYNTSEKI TSFEAHPDYI RAIAVHPTQP FVLTASDDMT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAGGATTG ACGTCAAGGT GTGTCTTCTC GGGGATCAGT TCACACCAGT ACGCTGTGTC 60
CCTTGAATCG CACGTTCTAA CCTTGGCACT ACAGAGGCAA TTGTTCGCCC GCAGCGAGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011041--Quinoprot_gluc/sorb_DH
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0005829--C:cytosol
GO:0000139--C:Golgi membrane
GO:0005634--C:nucleus
GO:0003824--F:catalytic activity
GO:0005198--F:structural molecule activity
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:0032511--P:late endosome to vacuole transport via multivesicular body sorting pathway
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER

KEGG

vda:VDAG_00773

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000654	Aegilops tauschii	45.06	0.00e+00	765.00
IUUC-Aml-002154	Ailuropoda melanoleuca	55.49	0.00e+00	967.00
IUUC-Atr-003090	Amborella trichopoda	55.33	0.00e+00	882.00
IUUC-Apl-003976	Anas platyrhynchos	55.86	0.00e+00	966.00
IUUC-Aca-004301	Anolis carolinensis	55.74	0.00e+00	967.00
IUUC-Aly-006508	Arabidopsis lyrata	53.26	0.00e+00	901.00
IUUC-Ath-007635	Arabidopsis thaliana	53.26	0.00e+00	900.00
IUUC-Ago-007914	Ashbya gossypii	51.07	0.00e+00	849.00
IUUC-Acl-008237	Aspergillus clavatus	79.42	0.00e+00	1377.00
IUUC-Afl-008535	Aspergillus flavus	78.32	0.00e+00	1313.00
IUUC-Afu-008845	Aspergillus fumigatus	79.73	0.00e+00	1342.00
IUUC-Ani-009135	Aspergillus nidulans	77.51	0.00e+00	1320.00
IUUC-Ang-009654	Aspergillus niger	84.45	0.00e+00	1202.00
IUUC-Aor-009939	Aspergillus oryzae	78.97	0.00e+00	1389.00
IUUC-Ate-010355	Aspergillus terreus	79.12	0.00e+00	1326.00
IUUC-Ame-010922	Astyanax mexicanus	51.30	0.00e+00	838.00
IUUC-Bgr-012249	Blumeria graminis	81.50	0.00e+00	1360.00
IUUC-Bta-013579	Bos taurus	56.49	0.00e+00	874.00
IUUC-Bci-013866	Botrytis cinerea	84.52	0.00e+00	1388.00
IUUC-Bdi-015046	Brachypodium distachyon	53.51	0.00e+00	912.00
IUUC-Bol-015466	Brassica oleracea	53.36	0.00e+00	882.00
IUUC-Bra-016617	Brassica rapa	53.24	0.00e+00	880.00
IUUC-Cel-018387	Caenorhabditis elegans	50.67	0.00e+00	879.00
IUUC-Cja-019145	Callithrix jacchus	55.61	0.00e+00	967.00
IUUC-Cfa-020564	Canis familiaris	55.49	0.00e+00	966.00
IUUC-Cpo-022201	Cavia porcellus	55.61	0.00e+00	967.00
IUUC-Cre-022938	Chlamydomonas reinhardtii	52.18	0.00e+00	845.00
IUUC-Csa-023383	Chlorocebus sabaeus	59.23	0.00e+00	749.00
IUUC-Cho-024454	Choloepus hoffmanni	52.57	0.00e+00	822.00
IUUC-Cin-025681	Ciona intestinalis	53.26	0.00e+00	881.00
IUUC-Csv-026012	Ciona savignyi	53.51	0.00e+00	877.00
IUUC-Cgl-026649	Colletotrichum gloeosporioides	84.34	0.00e+00	1358.00
IUUC-Cne-026986	Cryptococcus neoformans	56.75	0.00e+00	958.00
IUUC-Cme-027219	Cyanidioschyzon merolae	44.58	0.00e+00	756.00
IUUC-Dre-027846	Danio rerio	55.49	0.00e+00	966.00
IUUC-Dor-030462	Dipodomys ordii	53.82	0.00e+00	774.00
IUUC-Dse-031268	Dothistroma septosporum	77.75	0.00e+00	1308.00
IUUC-Dme-031791	Drosophila melanogaster	52.83	0.00e+00	908.00
IUUC-Ete-033166	Echinops telfairi	52.50	2.00e-180	624.00
IUUC-Eca-034180	Equus caballus	53.94	0.00e+00	924.00
IUUC-Eeu-035086	Erinaceus europaeus	44.52	2.00e-101	362.00
IUUC-Fca-036265	Felis catus	55.49	0.00e+00	965.00
IUUC-Fal-037202	Ficedula albicollis	55.48	0.00e+00	925.00
IUUC-Fox-037711	Fusarium oxysporum	87.56	0.00e+00	1377.00
IUUC-Fso-038268	Fusarium solani	87.01	0.00e+00	1370.00
IUUC-Gmo-039046	Gadus morhua	54.74	0.00e+00	951.00
IUUC-Ggr-039863	Gaeumannomyces graminis	89.68	0.00e+00	1426.00
IUUC-Gga-041112	Gallus gallus	55.61	0.00e+00	971.00
IUUC-Gac-041733	Gasterosteus aculeatus	54.85	0.00e+00	933.00
IUUC-Gma-044333	Glycine max	53.31	0.00e+00	916.00
IUUC-Ggo-044984	Gorilla gorilla	55.61	0.00e+00	966.00
IUUC-Hsa-046698	Homo sapiens	55.61	0.00e+00	966.00
IUUC-Hvu-047669	Hordeum vulgare	61.30	2.00e-140	490.00
IUUC-Itr-048212	Ictidomys tridecemlineatus	55.49	0.00e+00	964.00
IUUC-Kpa-049265	Komagataella pastoris	57.14	0.00e+00	960.00
IUUC-Lch-050473	Latimeria chalumnae	54.99	0.00e+00	956.00
IUUC-Lpe-051579	Leersia perrieri	53.51	0.00e+00	905.00
IUUC-Loc-052675	Lepisosteus oculatus	55.36	0.00e+00	964.00
IUUC-Lma-053218	Leptosphaeria maculans	74.54	0.00e+00	1230.00
IUUC-Laf-053757	Loxodonta africana	55.23	0.00e+00	957.00
IUUC-Mcc-054859	Macaca mulatta	55.61	0.00e+00	967.00
IUUC-Meu-056174	Macropus eugenii	47.95	5.00e-89	320.00
IUUC-Mor-057264	Magnaporthe oryzae	88.31	0.00e+00	1401.00
IUUC-Mpo-057538	Magnaporthe poae	89.19	0.00e+00	1449.00
IUUC-Mtr-058310	Medicago truncatula	52.63	0.00e+00	916.00
IUUC-Mla-058937	Melampsora laricipopulina	57.74	0.00e+00	971.00
IUUC-Mga-059875	Meleagris gallopavo	55.35	0.00e+00	964.00
IUUC-Mvi-060240	Microbotryum violaceum	56.79	0.00e+00	959.00
IUUC-Mmr-061261	Microcebus murinus	55.49	0.00e+00	965.00
IUUC-Mdo-062076	Monodelphis domestica	55.73	0.00e+00	971.00
IUUC-Mmu-063324	Mus musculus	55.36	0.00e+00	965.00
IUUC-Mac-064636	Musa acuminata	52.13	0.00e+00	897.00
IUUC-Mpu-065961	Mustela putorius furo	55.49	0.00e+00	966.00
IUUC-Mlu-067059	Myotis lucifugus	54.87	0.00e+00	951.00
IUUC-Nfi-068277	Neosartorya fischeri	79.78	0.00e+00	1332.00
IUUC-Ncr-068659	Neurospora crassa	82.48	0.00e+00	1382.00
IUUC-Nle-069034	Nomascus leucogenys	55.61	0.00e+00	967.00
IUUC-Opr-070334	Ochotona princeps	57.18	0.00e+00	900.00
IUUC-Ont-071563	Oreochromis niloticus	55.11	0.00e+00	954.00
IUUC-Oan-073416	Ornithorhynchus anatinus	55.87	0.00e+00	926.00
IUUC-Ocu-074522	Oryctolagus cuniculus	55.49	0.00e+00	963.00
IUUC-Oba-075760	Oryza barthii	51.97	0.00e+00	889.00
IUUC-Obr-076163	Oryza brachyantha	53.51	0.00e+00	902.00
IUUC-Ogl-077450	Oryza glaberrima	52.46	0.00e+00	910.00
IUUC-Ogu-078994	Oryza glumaepatula	51.97	0.00e+00	888.00
IUUC-Oin-079856	Oryza indica	53.28	0.00e+00	895.00
IUUC-Olo-080731	Oryza longistaminata	52.60	0.00e+00	875.00
IUUC-Ome-081554	Oryza meridionalis	49.94	0.00e+00	831.00
IUUC-Oni-082324	Oryza nivara	51.97	0.00e+00	889.00
IUUC-Opu-083400	Oryza punctata	51.07	0.00e+00	877.00
IUUC-Oru-084829	Oryza rufipogon	51.97	0.00e+00	889.00
IUUC-Osa-086026	Oryza sativa	52.70	0.00e+00	914.00
IUUC-Ola-087245	Oryzias latipes	54.20	0.00e+00	959.00
IUUC-Olu-087655	Ostreococcus lucimarinus	53.46	0.00e+00	895.00
IUUC-Oga-088163	Otolemur garnettii	53.75	0.00e+00	920.00
IUUC-Oar-089842	Ovis aries	55.36	0.00e+00	965.00
IUUC-Ptr-090501	Pan troglodytes	55.61	0.00e+00	966.00
IUUC-Pan-092011	Papio anubis	55.61	0.00e+00	967.00
IUUC-Psi-093308	Pelodiscus sinensis	55.61	0.00e+00	968.00
IUUC-Pma-094695	Petromyzon marinus	54.77	0.00e+00	887.00
IUUC-Pno-094785	Phaeosphaeria nodorum	76.47	4.00e-138	483.00
IUUC-Ppa-095638	Physcomitrella patens	55.14	0.00e+00	935.00
IUUC-Pfo-096587	Poecilia formosa	55.36	0.00e+00	961.00
IUUC-Pab-097926	Pongo abelii	53.62	0.00e+00	890.00
IUUC-Pop-099634	Populus trichocarpa	53.69	0.00e+00	925.00
IUUC-Pca-100965	Procavia capensis	54.13	0.00e+00	926.00
IUUC-Ppe-101470	Prunus persica	53.87	0.00e+00	917.00
IUUC-Pva-102451	Pteropus vampyrus	53.07	0.00e+00	763.00
IUUC-Pgr-103453	Puccinia graminis	58.26	0.00e+00	983.00
IUUC-Ptt-103868	Puccinia triticina	58.14	0.00e+00	979.00
IUUC-Pte-104274	Pyrenophora teres	76.53	0.00e+00	1275.00
IUUC-Pyt-104794	Pyrenophora triticirepentis	75.54	0.00e+00	1209.00
IUUC-Rno-105979	Rattus norvegicus	47.54	0.00e+00	717.00
IUUC-Sce-106269	Saccharomyces cerevisiae	52.85	0.00e+00	870.00
IUUC-Sha-106905	Sarcophilus harrisii	55.61	0.00e+00	969.00
IUUC-Sja-107838	Schizosaccharomyces japonicus	52.41	0.00e+00	872.00
IUUC-Spo-108299	Schizosaccharomyces pombe	53.47	0.00e+00	908.00
IUUC-Smo-108828	Selaginella moellendorffii	52.96	0.00e+00	909.00
IUUC-Sit-110692	Setaria italica	54.12	0.00e+00	909.00
IUUC-Sly-111775	Solanum lycopersicum	54.47	0.00e+00	919.00
IUUC-Stu-112906	Solanum tuberosum	53.36	0.00e+00	829.00
IUUC-Sar-113472	Sorex araneus	52.82	0.00e+00	699.00
IUUC-Sbi-113886	Sorghum bicolor	54.24	0.00e+00	918.00
IUUC-Sre-115040	Sporisorium reilianum	55.40	0.00e+00	951.00
IUUC-Ssc-115593	Sus scrofa	55.36	0.00e+00	964.00
IUUC-Tgu-117239	Taeniopygia guttata	55.74	0.00e+00	966.00
IUUC-Tru-118025	Takifugu rubripes	54.30	0.00e+00	953.00
IUUC-Tsy-118824	Tarsius syrichta	52.06	0.00e+00	703.00
IUUC-Tni-120142	Tetraodon nigroviridis	54.37	0.00e+00	949.00
IUUC-Tca-121613	Theobroma cacao	53.51	0.00e+00	916.00
IUUC-Tre-122072	Trichoderma reesei	84.00	0.00e+00	1389.00
IUUC-Tvi-122546	Trichoderma virens	84.90	0.00e+00	1399.00
IUUC-Tae-125395	Triticum aestivum	52.28	0.00e+00	910.00
IUUC-Tur-126283	Triticum urartu	45.05	0.00e+00	765.00
IUUC-Tme-127041	Tuber melanosporum	76.23	0.00e+00	1303.00
IUUC-Tbe-127770	Tupaia belangeri	55.02	0.00e+00	800.00
IUUC-Ttr-129294	Tursiops truncatus	55.36	0.00e+00	961.00
IUUC-Uma-129351	Ustilago maydis	55.00	0.00e+00	955.00
IUUC-Vpa-130037	Vicugna pacos	45.56	1.00e-109	389.00
IUUC-Vvi-131689	Vitis vinifera	53.77	0.00e+00	917.00
IUUC-Xtr-132633	Xenopus tropicalis	55.49	0.00e+00	956.00
IUUC-Xma-133347	Xiphophorus maculatus	55.24	0.00e+00	960.00
IUUC-Yli-134455	Yarrowia lipolytica	57.90	0.00e+00	945.00
IUUC-Zma-135867	Zea mays	54.49	0.00e+00	935.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence