iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Cre-022716

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Splicing factor, component of the U4/U6-U5 snRNP complex

Genbank Nucleotide ID

DS496144

Gene Name

PRP4; CHLREDRAFT_120649

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CHLREDRAFT_120649	EDO99838	EDO99838

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.70e-34	115.9	225	262
UBD/Beta-Prp	2.70e-49	167.5	117	223

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gH   v +++f +d  +l++Gs D++ k+WDlr+  ++
   Q: 225  GHVKAVLAIDFaPDgYHLATGSEDHSAKIWDLRKRGCV 262
           79999*******99999***************998887 PP

UBD/Beta-Prp

   S: 152  lvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlr 252
           l++G+ D+++rl++  +g+++rtl+g htd+   ++f++ g +++++s dgt +lwd  tg c+ +++gh++ v+ ++f p++ +  s++ D   riWd+r
   Q: 117  LATGASDGVCRLYSG-SGEVVRTLEG-HTDRLARVAFHPMGGHVATASFDGTWRLWDAATGACLLEQEGHSRAVYGLAFQPDGSLAGSAGLDAYGRIWDCR 215
           79***********77.*********9.************************************************************************** PP
   S: 253  sgdllktl 260
           +g ++ tl
   Q: 216  TGRCVLTL 223
           ****9987 PP

Organism

Chlamydomonas reinhardtii

Protein Sequence
(Fasta)

YTEGPEELRT ARMAIARYSL LRAKARLQGA KRRREDPREL EVGGCLYRSS VSSARAVVQQ 60
CSELGDSRPI SHCAFSPDGA SLAACGWGGS LSVWSVPAVT KRWAAPLPKD TPRFTGLATG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TACACGGAGG GACCTGAGGA GCTGCGGACA GCGCGCATGG CCATTGCCAG GTGGGGGCAG 60
GGGTGGGGGA GGCGAGGGAA TGGCTGGGGG TGGGTGGGCT GCGGCTGCTG CTTCGCTTGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0046540--C:U4/U6 x U5 tri-snRNP complex
GO:0030621--F:U4 snRNA binding
GO:0017070--F:U6 snRNA binding
GO:0000398--P:mRNA splicing, via spliceosome

KEGG

cre:CHLREDRAFT_120649

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000771	Aegilops tauschii	48.71	2.00e-86	311.00
IUUC-Aml-001737	Ailuropoda melanoleuca	47.75	4.00e-88	317.00
IUUC-Atr-002828	Amborella trichopoda	50.43	3.00e-88	317.00
IUUC-Apl-003723	Anas platyrhynchos	46.37	2.00e-87	314.00
IUUC-Aca-004972	Anolis carolinensis	46.96	1.00e-86	312.00
IUUC-Aly-006531	Arabidopsis lyrata	50.00	3.00e-91	327.00
IUUC-Ath-007367	Arabidopsis thaliana	49.57	1.00e-97	348.00
IUUC-Ago-007893	Ashbya gossypii	36.93	2.00e-42	164.00
IUUC-Acl-008236	Aspergillus clavatus	35.64	1.00e-57	215.00
IUUC-Afl-008522	Aspergillus flavus	35.98	2.00e-63	234.00
IUUC-Afu-008904	Aspergillus fumigatus	36.19	5.00e-62	230.00
IUUC-Ani-009198	Aspergillus nidulans	36.68	1.00e-65	241.00
IUUC-Ang-009662	Aspergillus niger	39.89	2.00e-66	244.00
IUUC-Aor-009881	Aspergillus oryzae	35.98	1.00e-63	235.00
IUUC-Ate-010333	Aspergillus terreus	35.93	9.00e-61	226.00
IUUC-Ame-011697	Astyanax mexicanus	45.45	2.00e-89	320.00
IUUC-Bgr-012254	Blumeria graminis	36.60	2.00e-59	221.00
IUUC-Bta-012615	Bos taurus	47.75	3.00e-88	317.00
IUUC-Bci-013720	Botrytis cinerea	36.68	5.00e-62	230.00
IUUC-Bdi-014302	Brachypodium distachyon	51.86	7.00e-94	335.00
IUUC-Bol-015594	Brassica oleracea	50.14	6.00e-93	333.00
IUUC-Bra-017465	Brassica rapa	49.86	8.00e-93	332.00
IUUC-Cel-018632	Caenorhabditis elegans	39.33	8.00e-73	265.00
IUUC-Cja-019747	Callithrix jacchus	47.75	2.00e-88	317.00
IUUC-Cfa-020288	Canis familiaris	47.75	3.00e-88	317.00
IUUC-Cpo-021440	Cavia porcellus	46.91	2.00e-86	311.00
IUUC-Csa-023139	Chlorocebus sabaeus	47.13	2.00e-80	290.00
IUUC-Cho-024481	Choloepus hoffmanni	47.04	2.00e-87	314.00
IUUC-Cin-025106	Ciona intestinalis	44.26	2.00e-81	294.00
IUUC-Csv-026087	Ciona savignyi	46.07	5.00e-85	306.00
IUUC-Cgl-026538	Colletotrichum gloeosporioides	35.34	7.00e-58	217.00
IUUC-Cne-026793	Cryptococcus neoformans	38.10	9.00e-70	255.00
IUUC-Dre-028723	Danio rerio	44.82	4.00e-88	316.00
IUUC-Dno-029299	Dasypus novemcinctus	47.47	7.00e-88	316.00
IUUC-Dse-031562	Dothistroma septosporum	36.06	7.00e-58	216.00
IUUC-Dme-031783	Drosophila melanogaster	42.13	2.00e-75	275.00
IUUC-Ete-032669	Echinops telfairi	47.47	3.00e-87	314.00
IUUC-Eca-033566	Equus caballus	47.75	3.00e-88	317.00
IUUC-Eeu-034524	Erinaceus europaeus	48.72	1.00e-60	225.00
IUUC-Fca-036215	Felis catus	47.75	3.00e-88	317.00
IUUC-Fal-037018	Ficedula albicollis	44.63	9.00e-70	255.00
IUUC-Fox-037936	Fusarium oxysporum	35.49	1.00e-57	215.00
IUUC-Fso-038366	Fusarium solani	35.23	7.00e-58	216.00
IUUC-Gmo-038966	Gadus morhua	43.84	3.00e-78	283.00
IUUC-Ggr-039942	Gaeumannomyces graminis	34.44	3.00e-56	210.00
IUUC-Gga-040797	Gallus gallus	46.37	3.00e-87	313.00
IUUC-Gac-042598	Gasterosteus aculeatus	44.44	4.00e-83	300.00
IUUC-Gma-044220	Glycine max	51.29	1.00e-90	325.00
IUUC-Ggo-044682	Gorilla gorilla	48.03	4.00e-89	320.00
IUUC-Hsa-045804	Homo sapiens	48.03	2.00e-89	320.00
IUUC-Hvu-047567	Hordeum vulgare	50.00	1.00e-86	311.00
IUUC-Itr-047882	Ictidomys tridecemlineatus	48.03	8.00e-89	319.00
IUUC-Kpa-049369	Komagataella pastoris	34.17	1.00e-53	202.00
IUUC-Lch-050074	Latimeria chalumnae	45.15	1.00e-76	278.00
IUUC-Lpe-051333	Leersia perrieri	49.86	2.00e-89	321.00
IUUC-Loc-052164	Lepisosteus oculatus	47.06	8.00e-91	325.00
IUUC-Lma-053088	Leptosphaeria maculans	34.82	2.00e-57	215.00
IUUC-Laf-053460	Loxodonta africana	47.75	2.00e-88	317.00
IUUC-Mcc-055859	Macaca mulatta	47.75	3.00e-88	317.00
IUUC-Meu-056134	Macropus eugenii	47.62	3.00e-87	313.00
IUUC-Mor-057251	Magnaporthe oryzae	34.54	1.00e-53	202.00
IUUC-Mpo-057375	Magnaporthe poae	37.85	4.00e-44	169.00
IUUC-Mtr-057656	Medicago truncatula	49.69	8.00e-81	292.00
IUUC-Mla-059145	Melampsora laricipopulina	43.01	2.00e-72	264.00
IUUC-Mga-059855	Meleagris gallopavo	46.37	6.00e-87	313.00
IUUC-Mvi-060372	Microbotryum violaceum	37.53	4.00e-69	253.00
IUUC-Mmr-060826	Microcebus murinus	47.47	1.00e-87	315.00
IUUC-Mdo-062119	Monodelphis domestica	47.62	2.00e-87	314.00
IUUC-Mmu-063351	Mus musculus	47.75	6.00e-88	316.00
IUUC-Mac-064846	Musa acuminata	51.86	1.00e-84	305.00
IUUC-Mpu-066006	Mustela putorius furo	47.75	3.00e-88	317.00
IUUC-Mlu-067398	Myotis lucifugus	47.47	6.00e-88	316.00
IUUC-Nfi-068399	Neosartorya fischeri	36.19	8.00e-65	239.00
IUUC-Ncr-068711	Neurospora crassa	36.01	4.00e-59	220.00
IUUC-Nle-069982	Nomascus leucogenys	47.75	2.00e-88	317.00
IUUC-Opr-070596	Ochotona princeps	47.75	3.00e-88	317.00
IUUC-Ont-072374	Oreochromis niloticus	46.93	3.00e-88	317.00
IUUC-Oan-073166	Ornithorhynchus anatinus	47.21	3.00e-88	317.00
IUUC-Ocu-074371	Oryctolagus cuniculus	47.75	3.00e-88	317.00
IUUC-Oba-075083	Oryza barthii	51.29	6.00e-89	319.00
IUUC-Obr-076405	Oryza brachyantha	47.85	3.00e-86	310.00
IUUC-Ogl-077683	Oryza glaberrima	49.28	6.00e-89	319.00
IUUC-Ogu-078486	Oryza glumaepatula	49.28	8.00e-89	319.00
IUUC-Oin-079679	Oryza indica	51.00	1.00e-93	335.00
IUUC-Olo-080243	Oryza longistaminata	49.57	2.00e-89	320.00
IUUC-Ome-081230	Oryza meridionalis	51.00	8.00e-94	335.00
IUUC-Oni-082961	Oryza nivara	51.00	8.00e-94	335.00
IUUC-Opu-083189	Oryza punctata	49.28	6.00e-89	319.00
IUUC-Oru-084353	Oryza rufipogon	51.00	1.00e-93	335.00
IUUC-Osa-085458	Oryza sativa	51.00	8.00e-94	335.00
IUUC-Ola-086940	Oryzias latipes	46.37	8.00e-89	319.00
IUUC-Olu-087580	Ostreococcus lucimarinus	40.60	2.00e-62	231.00
IUUC-Oga-088703	Otolemur garnettii	44.79	1.00e-82	298.00
IUUC-Oar-089829	Ovis aries	47.75	6.00e-88	316.00
IUUC-Ptr-090838	Pan troglodytes	48.03	2.00e-89	320.00
IUUC-Pan-092261	Papio anubis	47.75	6.00e-88	316.00
IUUC-Psi-093020	Pelodiscus sinensis	47.06	1.00e-88	318.00
IUUC-Pno-094858	Phaeosphaeria nodorum	35.01	6.00e-56	209.00
IUUC-Ppa-095531	Physcomitrella patens	50.14	2.00e-97	347.00
IUUC-Pfo-096812	Poecilia formosa	43.45	2.00e-74	271.00
IUUC-Pab-097805	Pongo abelii	46.48	2.00e-82	298.00
IUUC-Pop-100051	Populus trichocarpa	51.30	2.00e-91	327.00
IUUC-Pca-100152	Procavia capensis	47.75	2.00e-88	317.00
IUUC-Ppe-101244	Prunus persica	49.00	5.00e-94	336.00
IUUC-Pva-102529	Pteropus vampyrus	44.94	2.00e-79	287.00
IUUC-Pgr-103550	Puccinia graminis	37.35	2.00e-69	254.00
IUUC-Ptt-103951	Puccinia triticina	46.22	3.00e-56	211.00
IUUC-Pte-104151	Pyrenophora teres	33.42	1.00e-54	205.00
IUUC-Pyt-104571	Pyrenophora triticirepentis	33.94	5.00e-56	210.00
IUUC-Rno-105747	Rattus norvegicus	47.75	1.00e-87	315.00
IUUC-Sce-106418	Saccharomyces cerevisiae	33.33	2.00e-52	198.00
IUUC-Sha-107334	Sarcophilus harrisii	47.62	4.00e-87	313.00
IUUC-Sja-107794	Schizosaccharomyces japonicus	35.89	8.00e-51	192.00
IUUC-Spo-108189	Schizosaccharomyces pombe	42.11	2.00e-67	248.00
IUUC-Ssl-108550	Sclerotinia sclerotiorum	35.62	3.00e-59	220.00
IUUC-Smo-108924	Selaginella moellendorffii	51.29	6.00e-95	339.00
IUUC-Sit-110102	Setaria italica	51.86	1.00e-89	321.00
IUUC-Sly-111668	Solanum lycopersicum	49.57	1.00e-94	338.00
IUUC-Stu-111928	Solanum tuberosum	49.57	8.00e-95	339.00
IUUC-Sar-113266	Sorex araneus	43.98	3.00e-80	290.00
IUUC-Sbi-114134	Sorghum bicolor	51.00	1.00e-88	318.00
IUUC-Sre-115114	Sporisorium reilianum	42.40	5.00e-71	259.00
IUUC-Ssc-115443	Sus scrofa	47.75	3.00e-88	317.00
IUUC-Tgu-117157	Taeniopygia guttata	46.65	1.00e-87	315.00
IUUC-Tru-118587	Takifugu rubripes	47.21	4.00e-89	320.00
IUUC-Tsy-119157	Tarsius syrichta	47.75	8.00e-88	315.00
IUUC-Tni-120427	Tetraodon nigroviridis	46.78	2.00e-88	317.00
IUUC-Tca-121368	Theobroma cacao	51.58	8.00e-97	345.00
IUUC-Tre-122074	Trichoderma reesei	35.23	3.00e-55	207.00
IUUC-Tvi-122349	Trichoderma virens	35.23	5.00e-56	210.00
IUUC-Tae-125651	Triticum aestivum	48.71	1.00e-86	311.00
IUUC-Tur-125983	Triticum urartu	49.50	2.00e-80	290.00
IUUC-Tme-126951	Tuber melanosporum	35.99	4.00e-59	220.00
IUUC-Tbe-128136	Tupaia belangeri	42.70	2.00e-72	264.00
IUUC-Uma-129399	Ustilago maydis	42.13	1.00e-75	275.00
IUUC-Vda-129842	Verticillium dahliae	35.60	4.00e-58	217.00
IUUC-Vpa-130440	Vicugna pacos	47.47	2.00e-88	317.00
IUUC-Vvi-131075	Vitis vinifera	52.45	4.00e-99	353.00
IUUC-Xma-133002	Xiphophorus maculatus	47.06	1.00e-83	301.00
IUUC-Yli-134569	Yarrowia lipolytica	37.39	6.00e-59	219.00
IUUC-Zma-135799	Zea mays	48.27	2.00e-85	308.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence