iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099434

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000349

Gene Name

POPTRDRAFT_571428; POPTR_0013s07710g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0013s07710	POPTR_0013s07710.1	POPTR_0013s07710.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.70e-54	179.0	143	182
UBD/Beta-Prp	9.10e-103	344.6	455	710

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvll 36
           gH+d vt++ f   ++ tll sGs D t++vWDl   +++
   Q: 143  GHKDVVTSIMFhpdTNkTLLFSGSADATVRVWDLLAKKCI 182
           8***********7655899**************9777765 PP

UBD/Beta-Prp

   S: 19   spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgk.ilvtgseDrtikvwdls..........tgkcvhtlkghedsvl 98
           s +++llatgs+d+++++w+ ++ +++    gh ++v av fs++ k ++v+gs+Drtikvw+l+          + k   ++ +h++++ 
   Q: 455  SSGRPLLATGSKDNSVRLWNSESRNCIGVGTGHMGGVGAVAFSKKWKnFFVSGSSDRTIKVWSLDgisddadqpiNLKAKAVVAAHDKDIN 545
           47899**************************************99877**************8888889888888999999999******* PP
   S: 99   slsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfd 189
           sl++ p+++ + sGs+drt+ vw l+    +  +l+gh++ +++v+++p +++++++s D+t+++W ++ g++l+t++g ht+sv   sf 
   Q: 546  SLAIAPNDSLVCSGSQDRTACVWRLPDLVSVV-VLKGHKRGIWSVEFSPVDQCVITASGDKTIKMWAIADGSCLKTFEG-HTSSVLRASFL 634
           ********************************.*********************************************9.*********** PP
   S: 190  sngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriW.dlrsgdllktlqlhn 264
             g ++vs++ dg vklw ++t+ec  t+  h+d v+ ++  +++e +++g+ D ++++W d++ +d   ++ +++
   Q: 635  TRGSQFVSCGADGLVKLWTVKTNECTATYDQHEDKVWALAIGKKTEMFATGGGDAVVNLWyDSTASDKEEAFRKEE 710
           ******************************************************************9999999877 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MSSLQIKKNY RCVPSLQQFY SGGPFAVSSD GSFIACANGD AIKILDSSNA SIKASIEVDT 60
DSGLTALALD PNDRFLFSAG HSRLIRVWDL STFKCIRSWK GHDGPVMSMA CHASGGLLAT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACAAGCACAA ACAAAACCTT CCTTCCTCCT CCTCTATCCC TTCCACCAAA AATTTCTTCT 60
CCGTTCTTTA AACACCCATA TAAAGCTAAC TCTGCTCCTC ATGTCGTCAT TACAAATAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR011044--Quino_amine_DH_bsu
IPR011047--Quinoprotein_ADH-like_supfam
IPR013934--SSU_processome_Utp13
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08625--Utp13
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

pop:POPTR_0013s07710g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000765	Aegilops tauschii	57.47	0.00e+00	984.00
IUUC-Aml-002376	Ailuropoda melanoleuca	35.02	3.00e-145	508.00
IUUC-Atr-002486	Amborella trichopoda	63.24	0.00e+00	1116.00
IUUC-Aca-004363	Anolis carolinensis	31.15	2.00e-71	262.00
IUUC-Aly-006152	Arabidopsis lyrata	69.38	0.00e+00	1179.00
IUUC-Ath-006966	Arabidopsis thaliana	68.71	0.00e+00	1177.00
IUUC-Acl-008009	Aspergillus clavatus	26.78	1.00e-93	337.00
IUUC-Afl-008681	Aspergillus flavus	27.73	5.00e-92	332.00
IUUC-Afu-008798	Aspergillus fumigatus	26.77	4.00e-89	322.00
IUUC-Ani-009278	Aspergillus nidulans	27.55	8.00e-103	367.00
IUUC-Ang-009640	Aspergillus niger	28.83	5.00e-103	368.00
IUUC-Aor-010160	Aspergillus oryzae	27.73	7.00e-92	331.00
IUUC-Ate-010320	Aspergillus terreus	28.49	2.00e-101	363.00
IUUC-Ame-010930	Astyanax mexicanus	40.91	3.00e-41	160.00
IUUC-Bgr-012054	Blumeria graminis	30.26	1.00e-100	360.00
IUUC-Bta-012611	Bos taurus	36.16	3.00e-145	508.00
IUUC-Bci-013797	Botrytis cinerea	28.33	9.00e-101	361.00
IUUC-Bdi-014384	Brachypodium distachyon	62.39	0.00e+00	1093.00
IUUC-Bol-016483	Brassica oleracea	67.28	0.00e+00	1183.00
IUUC-Bra-017798	Brassica rapa	67.47	0.00e+00	1175.00
IUUC-Cel-018664	Caenorhabditis elegans	26.97	9.00e-85	307.00
IUUC-Cja-019092	Callithrix jacchus	35.90	2.00e-150	525.00
IUUC-Cfa-021040	Canis familiaris	35.70	5.00e-150	524.00
IUUC-Cpo-022529	Cavia porcellus	36.25	1.00e-144	506.00
IUUC-Csa-024205	Chlorocebus sabaeus	36.29	5.00e-152	531.00
IUUC-Cin-025560	Ciona intestinalis	32.31	2.00e-139	489.00
IUUC-Cgl-026481	Colletotrichum gloeosporioides	28.60	3.00e-106	379.00
IUUC-Cne-027082	Cryptococcus neoformans	28.94	8.00e-107	381.00
IUUC-Cme-027159	Cyanidioschyzon merolae	25.40	3.00e-40	160.00
IUUC-Dre-028138	Danio rerio	35.37	1.00e-151	530.00
IUUC-Dse-031429	Dothistroma septosporum	27.78	3.00e-101	362.00
IUUC-Ete-033086	Echinops telfairi	43.03	3.00e-96	345.00
IUUC-Eca-034354	Equus caballus	36.06	3.00e-145	508.00
IUUC-Eeu-034832	Erinaceus europaeus	42.15	4.00e-97	348.00
IUUC-Fca-036136	Felis catus	34.73	1.00e-140	493.00
IUUC-Fal-036859	Ficedula albicollis	35.23	6.00e-151	527.00
IUUC-Fso-038389	Fusarium solani	27.42	2.00e-99	357.00
IUUC-Gmo-038711	Gadus morhua	32.95	8.00e-134	470.00
IUUC-Gga-040263	Gallus gallus	35.08	1.00e-152	533.00
IUUC-Gac-041291	Gasterosteus aculeatus	35.41	9.00e-159	553.00
IUUC-Gma-044026	Glycine max	69.43	0.00e+00	1222.00
IUUC-Ggo-044693	Gorilla gorilla	36.30	1.00e-149	523.00
IUUC-Hsa-046048	Homo sapiens	36.30	6.00e-150	524.00
IUUC-Hvu-047608	Hordeum vulgare	62.50	0.00e+00	1090.00
IUUC-Itr-048391	Ictidomys tridecemlineatus	36.48	2.00e-157	548.00
IUUC-Lpe-050945	Leersia perrieri	59.80	0.00e+00	1048.00
IUUC-Loc-052679	Lepisosteus oculatus	35.76	3.00e-172	598.00
IUUC-Laf-053685	Loxodonta africana	34.85	4.00e-138	484.00
IUUC-Mcc-055861	Macaca mulatta	36.41	9.00e-150	523.00
IUUC-Mtr-058122	Medicago truncatula	68.25	0.00e+00	1206.00
IUUC-Mla-058980	Melampsora laricipopulina	28.50	6.00e-79	288.00
IUUC-Mga-060080	Meleagris gallopavo	33.99	1.00e-149	523.00
IUUC-Mvi-060338	Microbotryum violaceum	32.16	3.00e-141	495.00
IUUC-Mmr-060762	Microcebus murinus	35.59	2.00e-146	512.00
IUUC-Mdo-061975	Monodelphis domestica	36.12	4.00e-148	518.00
IUUC-Mmu-064038	Mus musculus	36.25	2.00e-147	516.00
IUUC-Mac-065189	Musa acuminata	67.44	0.00e+00	1199.00
IUUC-Mpu-066526	Mustela putorius furo	36.21	5.00e-144	504.00
IUUC-Mlu-067716	Myotis lucifugus	35.66	9.00e-160	556.00
IUUC-Nfi-068474	Neosartorya fischeri	27.00	2.00e-92	333.00
IUUC-Ncr-068826	Neurospora crassa	27.53	3.00e-90	325.00
IUUC-Nle-069832	Nomascus leucogenys	36.29	1.00e-152	533.00
IUUC-Ont-072371	Oreochromis niloticus	35.96	1.00e-162	566.00
IUUC-Oba-075963	Oryza barthii	61.32	0.00e+00	1071.00
IUUC-Obr-076173	Oryza brachyantha	62.08	0.00e+00	1069.00
IUUC-Ogl-077692	Oryza glaberrima	61.21	0.00e+00	1068.00
IUUC-Ogu-078965	Oryza glumaepatula	61.32	0.00e+00	1071.00
IUUC-Oin-079708	Oryza indica	60.86	0.00e+00	1065.00
IUUC-Olo-080679	Oryza longistaminata	60.04	0.00e+00	1068.00
IUUC-Oni-082960	Oryza nivara	60.75	0.00e+00	1065.00
IUUC-Opu-083282	Oryza punctata	60.82	0.00e+00	1036.00
IUUC-Oru-085224	Oryza rufipogon	61.09	0.00e+00	1068.00
IUUC-Osa-085320	Oryza sativa	61.09	0.00e+00	1068.00
IUUC-Ola-086370	Oryzias latipes	29.70	5.00e-71	261.00
IUUC-Olu-087814	Ostreococcus lucimarinus	33.02	7.00e-124	437.00
IUUC-Oga-088458	Otolemur garnettii	35.55	2.00e-156	545.00
IUUC-Ptr-090749	Pan troglodytes	35.95	2.00e-148	519.00
IUUC-Pan-091691	Papio anubis	35.01	1.00e-139	490.00
IUUC-Psi-093200	Pelodiscus sinensis	34.76	1.00e-152	533.00
IUUC-Pno-095048	Phaeosphaeria nodorum	29.27	2.00e-84	306.00
IUUC-Ppa-095336	Physcomitrella patens	51.61	0.00e+00	880.00
IUUC-Pfo-096132	Poecilia formosa	36.60	6.00e-159	554.00
IUUC-Pab-097855	Pongo abelii	36.41	2.00e-152	532.00
IUUC-Pca-100232	Procavia capensis	46.72	1.00e-51	197.00
IUUC-Ppe-101665	Prunus persica	69.56	0.00e+00	1225.00
IUUC-Pva-102178	Pteropus vampyrus	35.81	3.00e-150	525.00
IUUC-Ptt-103808	Puccinia triticina	28.34	2.00e-75	276.00
IUUC-Pte-104205	Pyrenophora teres	29.35	1.00e-102	367.00
IUUC-Pyt-104658	Pyrenophora triticirepentis	28.98	7.00e-94	338.00
IUUC-Rno-105617	Rattus norvegicus	36.52	1.00e-148	520.00
IUUC-Sce-106281	Saccharomyces cerevisiae	29.10	2.00e-100	359.00
IUUC-Sha-107378	Sarcophilus harrisii	36.32	2.00e-149	522.00
IUUC-Sja-107718	Schizosaccharomyces japonicus	31.05	9.00e-117	414.00
IUUC-Spo-108361	Schizosaccharomyces pombe	31.37	4.00e-111	395.00
IUUC-Ssl-108592	Sclerotinia sclerotiorum	28.20	1.00e-104	374.00
IUUC-Smo-109257	Selaginella moellendorffii	50.47	0.00e+00	870.00
IUUC-Sit-110258	Setaria italica	61.63	0.00e+00	1099.00
IUUC-Sly-111521	Solanum lycopersicum	65.02	0.00e+00	1143.00
IUUC-Stu-112718	Solanum tuberosum	78.83	4.00e-59	219.00
IUUC-Sbi-114768	Sorghum bicolor	60.40	0.00e+00	1087.00
IUUC-Sre-115159	Sporisorium reilianum	30.74	6.00e-83	301.00
IUUC-Tgu-117320	Taeniopygia guttata	34.07	7.00e-139	487.00
IUUC-Tru-118024	Takifugu rubripes	35.65	2.00e-156	545.00
IUUC-Tni-119971	Tetraodon nigroviridis	35.64	1.00e-157	549.00
IUUC-Tca-121248	Theobroma cacao	74.53	0.00e+00	1253.00
IUUC-Tre-122079	Trichoderma reesei	28.05	2.00e-100	359.00
IUUC-Tvi-122554	Trichoderma virens	28.78	6.00e-102	365.00
IUUC-Tae-123690	Triticum aestivum	62.49	0.00e+00	1100.00
IUUC-Tur-126436	Triticum urartu	57.61	0.00e+00	885.00
IUUC-Tme-126942	Tuber melanosporum	31.48	3.00e-109	389.00
IUUC-Ttr-128964	Tursiops truncatus	35.09	2.00e-146	512.00
IUUC-Vda-129749	Verticillium dahliae	28.62	9.00e-98	350.00
IUUC-Vvi-131511	Vitis vinifera	73.53	0.00e+00	1293.00
IUUC-Xtr-132816	Xenopus tropicalis	31.57	5.00e-128	451.00
IUUC-Xma-133672	Xiphophorus maculatus	36.03	8.00e-162	563.00
IUUC-Yli-134602	Yarrowia lipolytica	31.74	3.00e-125	442.00
IUUC-Zma-135559	Zea mays	58.14	0.00e+00	1053.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence