iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	RAID2
Protein-protein Interaction
IID	iRefIndex	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.10e-41	139.0	252	291
UBD/Beta-Prp	1.60e-67	227.8	51	326

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH+++v c+af  d ++++s+s D+++k+WD+++ ++l++
   Q: 252  GHASWVLCVAFsEDgKHFASSSSDNSVKIWDTSERKCLHT 291
           8**********9556****************999999875 PP

UBD/Beta-Prp

   S: 21   dksllatgsrdgtikvwdvttgkl...lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshd 115
            k++l+tg+ d+ +kvwd+++ ++    ++l+gh  +v +v  s+dg++++++s D t ++wd ++g+  h l+    ++++++fsp +++++sG +d
   Q: 51   PKDFLVTGGLDDLVKVWDLQEDNTlklRHKLKGHALGVVSVAVSSDGQTIASSSLDSTMCLWDARSGDKKHLLSFGPVDLWTVQFSPCNKYVISGLND 148
           5889****************9998776899******************************************************************** PP
   S: 116  rtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtge 213
             i ++ +etg+  +++++++ + + +++++pdg++++sG+ D+++ ++d++ gk+++tl+g h  +v+sl f++n++ l+++s+dg  kl+d+ +++
   Q: 149  GKISMYSVETGKAEQTLDAQNGKYTLSIAYSPDGKYIASGAIDGIITIFDVAAGKVVQTLEG-HAMPVRSLCFSPNSQLLLTASDDGHMKLYDVTHSD 245
           ***************9999999***************************************9.*********************************** PP
   S: 214  cvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwklk 295
           +v tl gh ++v++v+fs+++++++s ssD+s++iWd+  +++l+t++ h ++v+ v + s+g+ +++++sed+++ni+ + 
   Q: 246  VVGTLSGHASWVLCVAFSEDGKHFASSSSDNSVKIWDTSERKCLHTFAEHTDQVWGVRY-SPGNDKVASASEDKSLNIYYCP 326
           ***********************************************************.*******************985 PP

Organism

Drosophila melanogaster

Protein Sequence
(Fasta)

MFSVLHKEEN AHDSQLWACT WGRDTAASDP DDAVVEPEEN PFDFDKKEAR PKDFLVTGGL 60
DDLVKVWDLQ EDNTLKLRHK LKGHALGVVS VAVSSDGQTI ASSSLDSTMC LWDARSGDKK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AACCATTGTT ATCGATAACA GCTAATTTGC TGATCGCTCT CGTTCGCATA AAATAAACAC 60
TTTTCCGGCA TTTTAAAATG GTAAGTAGAT ATTTAACGAA CTGTGCCTTT TATACATCCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

KEGG

dme:Dmel_CG3909

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000774	Aegilops tauschii	32.87	3.00e-48	184.00
IUUC-Aml-002245	Ailuropoda melanoleuca	52.31	6.00e-86	309.00
IUUC-Atr-003142	Amborella trichopoda	42.86	2.00e-41	160.00
IUUC-Apl-003179	Anas platyrhynchos	51.08	4.00e-88	317.00
IUUC-Aca-004880	Anolis carolinensis	52.00	9.00e-95	338.00
IUUC-Aly-005956	Arabidopsis lyrata	34.81	1.00e-52	199.00
IUUC-Ath-007230	Arabidopsis thaliana	35.10	8.00e-48	183.00
IUUC-Ame-011511	Astyanax mexicanus	51.38	2.00e-89	321.00
IUUC-Bgr-012189	Blumeria graminis	28.78	1.00e-30	126.00
IUUC-Bta-012936	Bos taurus	52.62	2.00e-86	311.00
IUUC-Bdi-015020	Brachypodium distachyon	37.63	4.00e-51	194.00
IUUC-Bol-015927	Brassica oleracea	35.69	2.00e-54	204.00
IUUC-Bra-017323	Brassica rapa	35.99	7.00e-54	203.00
IUUC-Cja-019961	Callithrix jacchus	52.31	8.00e-86	309.00
IUUC-Cfa-020862	Canis familiaris	52.31	3.00e-85	307.00
IUUC-Cpo-021356	Cavia porcellus	52.31	2.00e-85	308.00
IUUC-Cre-022602	Chlamydomonas reinhardtii	40.59	6.00e-49	186.00
IUUC-Csa-024067	Chlorocebus sabaeus	52.62	4.00e-86	310.00
IUUC-Cho-024421	Choloepus hoffmanni	48.48	5.00e-45	172.00
IUUC-Cin-025261	Ciona intestinalis	47.08	6.00e-81	293.00
IUUC-Cne-026846	Cryptococcus neoformans	27.83	2.00e-26	112.00
IUUC-Dre-027706	Danio rerio	41.23	5.00e-63	233.00
IUUC-Dno-029084	Dasypus novemcinctus	52.29	7.00e-85	306.00
IUUC-Dor-030353	Dipodomys ordii	46.34	4.00e-65	240.00
IUUC-Ete-032261	Echinops telfairi	51.08	3.00e-84	304.00
IUUC-Eca-034231	Equus caballus	48.00	6.00e-75	273.00
IUUC-Eeu-034828	Erinaceus europaeus	51.43	1.00e-79	288.00
IUUC-Fca-036569	Felis catus	52.62	1.00e-85	308.00
IUUC-Fal-037469	Ficedula albicollis	51.08	1.00e-87	315.00
IUUC-Gmo-039579	Gadus morhua	53.85	9.00e-93	332.00
IUUC-Gga-040808	Gallus gallus	51.10	4.00e-85	306.00
IUUC-Gac-042100	Gasterosteus aculeatus	51.38	5.00e-89	320.00
IUUC-Gma-043509	Glycine max	38.89	1.00e-58	219.00
IUUC-Ggo-045227	Gorilla gorilla	52.31	8.00e-86	309.00
IUUC-Hsa-045839	Homo sapiens	52.31	8.00e-86	309.00
IUUC-Hvu-047591	Hordeum vulgare	33.83	6.00e-49	186.00
IUUC-Itr-048741	Ictidomys tridecemlineatus	52.62	3.00e-86	310.00
IUUC-Lch-049549	Latimeria chalumnae	49.23	1.00e-84	305.00
IUUC-Lpe-050746	Leersia perrieri	34.91	1.00e-48	186.00
IUUC-Loc-052540	Lepisosteus oculatus	52.31	2.00e-86	311.00
IUUC-Laf-053907	Loxodonta africana	52.62	3.00e-86	310.00
IUUC-Mcc-055828	Macaca mulatta	49.86	7.00e-82	296.00
IUUC-Meu-056075	Macropus eugenii	57.03	5.00e-80	289.00
IUUC-Mtr-057728	Medicago truncatula	38.51	4.00e-54	204.00
IUUC-Mga-059872	Meleagris gallopavo	51.08	1.00e-87	315.00
IUUC-Mvi-060564	Microbotryum violaceum	30.39	9.00e-30	123.00
IUUC-Mmr-060985	Microcebus murinus	52.53	2.00e-82	298.00
IUUC-Mdo-062758	Monodelphis domestica	51.84	4.00e-90	323.00
IUUC-Mmu-063580	Mus musculus	52.00	7.00e-86	309.00
IUUC-Mac-064880	Musa acuminata	37.87	5.00e-57	213.00
IUUC-Mpu-066577	Mustela putorius furo	52.62	2.00e-86	311.00
IUUC-Nle-069573	Nomascus leucogenys	52.31	8.00e-86	309.00
IUUC-Opr-070216	Ochotona princeps	52.62	7.00e-86	309.00
IUUC-Ont-071981	Oreochromis niloticus	52.92	2.00e-91	327.00
IUUC-Oan-073223	Ornithorhynchus anatinus	57.43	2.00e-64	237.00
IUUC-Ocu-074199	Oryctolagus cuniculus	48.68	2.00e-69	254.00
IUUC-Oba-075255	Oryza barthii	38.26	3.00e-41	160.00
IUUC-Obr-076168	Oryza brachyantha	40.56	1.00e-36	145.00
IUUC-Ogl-077777	Oryza glaberrima	34.62	5.00e-47	180.00
IUUC-Ogu-078780	Oryza glumaepatula	34.62	5.00e-47	180.00
IUUC-Oin-079228	Oryza indica	34.62	6.00e-50	190.00
IUUC-Olo-080617	Oryza longistaminata	43.26	2.00e-31	127.00
IUUC-Ome-081421	Oryza meridionalis	34.02	1.00e-45	176.00
IUUC-Oni-082997	Oryza nivara	34.62	6.00e-50	190.00
IUUC-Opu-083931	Oryza punctata	34.91	4.00e-49	187.00
IUUC-Oru-084645	Oryza rufipogon	34.62	5.00e-47	180.00
IUUC-Osa-085842	Oryza sativa	34.62	6.00e-50	190.00
IUUC-Ola-086696	Oryzias latipes	52.62	4.00e-87	313.00
IUUC-Olu-087643	Ostreococcus lucimarinus	39.90	4.00e-43	166.00
IUUC-Oga-088272	Otolemur garnettii	52.62	7.00e-87	312.00
IUUC-Oar-089416	Ovis aries	52.62	2.00e-86	311.00
IUUC-Ptr-090944	Pan troglodytes	52.31	8.00e-86	309.00
IUUC-Pan-091861	Papio anubis	52.31	8.00e-86	309.00
IUUC-Psi-093750	Pelodiscus sinensis	51.08	3.00e-87	314.00
IUUC-Pma-094608	Petromyzon marinus	49.39	5.00e-80	290.00
IUUC-Ppa-095737	Physcomitrella patens	36.07	3.00e-53	201.00
IUUC-Pfo-096479	Poecilia formosa	53.23	4.00e-87	313.00
IUUC-Pab-098179	Pongo abelii	52.31	8.00e-86	309.00
IUUC-Pop-099532	Populus trichocarpa	38.85	2.00e-54	204.00
IUUC-Pca-100664	Procavia capensis	48.25	1.00e-48	186.00
IUUC-Ppe-102056	Prunus persica	37.91	6.00e-58	216.00
IUUC-Pva-102859	Pteropus vampyrus	52.31	5.00e-85	306.00
IUUC-Rno-105826	Rattus norvegicus	51.69	3.00e-85	307.00
IUUC-Sha-106660	Sarcophilus harrisii	51.08	1.00e-84	305.00
IUUC-Sja-107800	Schizosaccharomyces japonicus	31.74	2.00e-33	135.00
IUUC-Spo-108244	Schizosaccharomyces pombe	30.94	1.00e-32	132.00
IUUC-Smo-109382	Selaginella moellendorffii	42.55	3.00e-60	224.00
IUUC-Sit-110048	Setaria italica	38.57	8.00e-45	173.00
IUUC-Sly-111618	Solanum lycopersicum	36.90	2.00e-53	201.00
IUUC-Stu-112543	Solanum tuberosum	36.90	2.00e-55	208.00
IUUC-Sar-113743	Sorex araneus	41.54	8.00e-63	233.00
IUUC-Sbi-114309	Sorghum bicolor	38.91	2.00e-45	174.00
IUUC-Ssc-115560	Sus scrofa	50.46	8.00e-81	292.00
IUUC-Tgu-117300	Taeniopygia guttata	51.08	9.00e-88	315.00
IUUC-Tru-117933	Takifugu rubripes	52.31	5.00e-91	326.00
IUUC-Tsy-119574	Tarsius syrichta	44.62	7.00e-65	239.00
IUUC-Tni-120191	Tetraodon nigroviridis	56.96	1.00e-72	265.00
IUUC-Tca-120983	Theobroma cacao	37.98	8.00e-59	219.00
IUUC-Tre-122088	Trichoderma reesei	32.94	2.00e-36	144.00
IUUC-Tae-122888	Triticum aestivum	33.72	2.00e-50	191.00
IUUC-Tur-126711	Triticum urartu	34.21	6.00e-50	190.00
IUUC-Tme-127066	Tuber melanosporum	30.77	3.00e-37	148.00
IUUC-Tbe-127802	Tupaia belangeri	52.62	1.00e-85	308.00
IUUC-Ttr-128861	Tursiops truncatus	57.60	5.00e-30	124.00
IUUC-Vda-129720	Verticillium dahliae	28.62	4.00e-26	111.00
IUUC-Vpa-130618	Vicugna pacos	52.69	3.00e-70	257.00
IUUC-Vvi-130981	Vitis vinifera	37.76	8.00e-55	206.00
IUUC-Xtr-132460	Xenopus tropicalis	51.38	9.00e-87	312.00
IUUC-Xma-134154	Xiphophorus maculatus	53.54	1.00e-87	315.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence