iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNA	RAID2
Protein-protein Interaction
IID	iRefIndex	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.50e-06	28.6	189	213

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 6    vtclafsdtllvsGsdDgtikvWDl 30
            ++++ +++ + +G+ Dg + v++l
   Q: 189  LYSVCGTNRSVYVGGEDGYVEVFNL 213
           5667664478999*******99996 PP

Organism

Caenorhabditis elegans

Protein Sequence
(Fasta)

MLVEFDNPPL CMKSNKDGSR LVVGFVDGSI RFYDTQQHEE EFQEIWKFQT KSSIRGVDLD 60
EHKKRVYAVT KNRSLCVFDI DTGKRVRCIL KCHRSVPTAI CTLPPTALKS QQLATADESG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCTCGTCG AATTTGATAA TCCACCACTT TGTATGAAAT CTAACAAAGA TGGAAGTCGC 60
CTTGTCGTTG GATTTGTGGA TGGAAGTATT CGATTCTATG ACACCCAACA ACACGAGGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
IPR017422--WDR55

PROSITE

PS50294--WD_REPEATS_REGION

SMART

SM00320--WD40

Gene Ontology

GO:0042273--P:ribosomal large subunit biogenesis
GO:0006364--P:rRNA processing

KEGG

cel:CELE_Y44F5A.1

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001768	Ailuropoda melanoleuca	26.95	9.00e-19	87.80
IUUC-Apl-003880	Anas platyrhynchos	24.57	1.00e-17	84.30
IUUC-Aca-005060	Anolis carolinensis	25.30	1.00e-18	87.00
IUUC-Bta-013497	Bos taurus	24.32	6.00e-18	83.60
IUUC-Cja-018792	Callithrix jacchus	25.19	2.00e-18	85.10
IUUC-Cfa-020739	Canis familiaris	26.14	2.00e-18	86.30
IUUC-Cpo-022331	Cavia porcellus	26.36	2.00e-19	88.20
IUUC-Cre-022921	Chlamydomonas reinhardtii	27.64	2.00e-12	64.30
IUUC-Csa-023414	Chlorocebus sabaeus	25.58	1.00e-18	86.30
IUUC-Cho-024600	Choloepus hoffmanni	27.10	9.00e-20	89.70
IUUC-Cin-025565	Ciona intestinalis	25.79	4.00e-16	77.40
IUUC-Csv-026294	Ciona savignyi	24.68	2.00e-16	79.00
IUUC-Dre-028492	Danio rerio	25.89	4.00e-19	87.80
IUUC-Dno-030050	Dasypus novemcinctus	25.08	5.00e-16	79.00
IUUC-Dor-030386	Dipodomys ordii	25.29	6.00e-12	63.90
IUUC-Ete-032491	Echinops telfairi	25.58	8.00e-18	83.20
IUUC-Eca-033583	Equus caballus	28.29	8.00e-21	94.70
IUUC-Eeu-034976	Erinaceus europaeus	25.31	6.00e-16	76.60
IUUC-Fca-036417	Felis catus	26.17	3.00e-19	88.20
IUUC-Gmo-039505	Gadus morhua	28.25	1.00e-20	92.40
IUUC-Gga-040732	Gallus gallus	26.48	1.00e-18	85.90
IUUC-Gac-041313	Gasterosteus aculeatus	26.97	8.00e-21	93.20
IUUC-Ggo-044748	Gorilla gorilla	25.00	4.00e-18	84.00
IUUC-Hsa-046943	Homo sapiens	25.00	2.00e-17	81.60
IUUC-Hvu-047659	Hordeum vulgare	22.31	7.00e-10	57.00
IUUC-Itr-048110	Ictidomys tridecemlineatus	27.34	6.00e-20	90.50
IUUC-Lch-050331	Latimeria chalumnae	24.23	9.00e-12	63.20
IUUC-Loc-051946	Lepisosteus oculatus	25.58	2.00e-20	92.80
IUUC-Laf-054035	Loxodonta africana	26.17	3.00e-19	88.20
IUUC-Meu-056596	Macropus eugenii	28.12	2.00e-20	92.00
IUUC-Mga-059839	Meleagris gallopavo	26.70	8.00e-13	67.80
IUUC-Mdo-062868	Monodelphis domestica	27.73	2.00e-19	90.50
IUUC-Mmu-064305	Mus musculus	24.70	3.00e-19	88.20
IUUC-Mpu-066779	Mustela putorius furo	26.17	5.00e-19	87.40
IUUC-Mlu-067223	Myotis lucifugus	25.53	4.00e-19	89.00
IUUC-Nle-069852	Nomascus leucogenys	25.97	2.00e-20	91.70
IUUC-Ont-072452	Oreochromis niloticus	24.62	5.00e-19	87.40
IUUC-Ocu-074628	Oryctolagus cuniculus	24.61	4.00e-17	80.90
IUUC-Ola-086463	Oryzias latipes	25.31	2.00e-16	79.00
IUUC-Olu-087897	Ostreococcus lucimarinus	25.36	3.00e-11	61.20
IUUC-Oga-089114	Otolemur garnettii	25.39	6.00e-18	84.00
IUUC-Ptr-090556	Pan troglodytes	25.00	5.00e-18	84.00
IUUC-Pan-092828	Papio anubis	25.58	1.00e-18	86.30
IUUC-Psi-093609	Pelodiscus sinensis	25.49	3.00e-16	79.30
IUUC-Pma-094413	Petromyzon marinus	26.95	6.00e-18	84.00
IUUC-Ppa-095422	Physcomitrella patens	20.45	1.00e-14	73.20
IUUC-Pfo-096389	Poecilia formosa	25.53	2.00e-19	88.60
IUUC-Pab-098095	Pongo abelii	25.97	1.00e-18	86.30
IUUC-Pca-100408	Procavia capensis	25.78	1.00e-18	86.30
IUUC-Pva-102549	Pteropus vampyrus	26.36	2.00e-19	88.60
IUUC-Rno-105079	Rattus norvegicus	26.56	5.00e-18	85.50
IUUC-Sha-107299	Sarcophilus harrisii	27.31	3.00e-16	79.70
IUUC-Smo-109613	Selaginella moellendorffii	22.29	1.00e-11	62.40
IUUC-Sit-110263	Setaria italica	23.77	2.00e-12	65.10
IUUC-Sbi-114617	Sorghum bicolor	24.62	1.00e-11	62.80
IUUC-Sre-115136	Sporisorium reilianum	23.53	4.00e-07	48.10
IUUC-Ssc-116268	Sus scrofa	26.36	6.00e-17	81.60
IUUC-Tgu-116720	Taeniopygia guttata	29.60	2.00e-09	56.60
IUUC-Tru-117977	Takifugu rubripes	25.08	2.00e-18	85.50
IUUC-Tni-119904	Tetraodon nigroviridis	26.56	6.00e-18	83.60
IUUC-Tae-124364	Triticum aestivum	23.46	4.00e-11	61.20
IUUC-Tbe-127276	Tupaia belangeri	26.14	2.00e-16	78.20
IUUC-Uma-129505	Ustilago maydis	24.51	3.00e-03	35.00
IUUC-Vpa-130276	Vicugna pacos	26.44	1.00e-16	78.20
IUUC-Xtr-132529	Xenopus tropicalis	24.09	6.00e-18	85.10

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence