iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

   S: 6    vtclaf.sd..tllvsGsdDgtikvWDlrtgvll 36
            +c a+ s+  +++ +G  Dgt+++WDlrt+  +
   Q: 386  LSCQALaSTkeNMVFAGFTDGTVRIWDLRTQEIV 419
           566677734468999999************9876 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MCKTLGVKSR TRIKRKKYDL VWFVXDLKTL HSQSNDTFGG ILLKGTEASN SSGRFLSIME 60
QLPEELKIIL SEMTAKLNNI SSLVENFQAT GVLSRTPHIS KMVKTTQNSA KKEDKPVPEP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAGAAAACAC CACCCCCTTC AGGATCCAGC CCCAAGCAGC CCTCTAGGAA TGAAGATCTA 60
CTGGTCCCTT CAATGACAGT CCTGGCTGAA ATGGATAGTG AAGGCTTGAG CACTGGCCCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR009146--Groucho_enhance
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR01850--GROUCHOFAMLY

SMART

SM00320--WD40

Gene Ontology

GO:0005938--C:cell cortex
GO:0005634--C:nucleus
GO:0043234--C:protein complex
GO:0045666--P:positive regulation of neuron differentiation
GO:0006355--P:regulation of transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002169	Ailuropoda melanoleuca	47.47	2.00e-100	358.00
IUUC-Bta-012704	Bos taurus	44.54	6.00e-98	351.00
IUUC-Cfa-020822	Canis familiaris	56.90	6.00e-88	317.00
IUUC-Cpo-021589	Cavia porcellus	48.55	4.00e-85	308.00
IUUC-Csa-023760	Chlorocebus sabaeus	42.91	1.00e-111	397.00
IUUC-Dno-029434	Dasypus novemcinctus	37.84	4.00e-39	155.00
IUUC-Dor-030782	Dipodomys ordii	53.55	2.00e-96	345.00
IUUC-Eca-033556	Equus caballus	57.91	4.00e-104	370.00
IUUC-Fca-035421	Felis catus	48.99	1.00e-107	383.00
IUUC-Ggo-044650	Gorilla gorilla	44.44	6.00e-110	391.00
IUUC-Hsa-046311	Homo sapiens	41.94	2.00e-108	385.00
IUUC-Itr-048864	Ictidomys tridecemlineatus	55.40	7.00e-61	226.00
IUUC-Laf-053971	Loxodonta africana	53.72	1.00e-86	312.00
IUUC-Mcc-055698	Macaca mulatta	42.73	4.00e-110	392.00
IUUC-Mmr-061647	Microcebus murinus	42.45	4.00e-116	411.00
IUUC-Mmu-064062	Mus musculus	70.31	0.00e+00	803.00
IUUC-Mpu-066131	Mustela putorius furo	46.44	8.00e-106	377.00
IUUC-Mlu-068020	Myotis lucifugus	46.88	1.00e-104	373.00
IUUC-Oga-088838	Otolemur garnettii	58.16	5.00e-80	290.00
IUUC-Oar-090417	Ovis aries	44.91	2.00e-101	362.00
IUUC-Ptr-090523	Pan troglodytes	42.21	4.00e-100	358.00
IUUC-Pan-092275	Papio anubis	42.68	7.00e-111	394.00
IUUC-Pab-097952	Pongo abelii	53.11	2.00e-96	345.00
IUUC-Pva-102968	Pteropus vampyrus	48.16	4.00e-109	388.00
IUUC-Ssc-116390	Sus scrofa	45.41	3.00e-102	365.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence