iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Xtr-132084

Ensembl Protein ID

ENSXETP00000046771.3

UniProt Accession

F6S410; F6S410_XENTR

Genbank Protein ID

ENSXETP00000046771

Protein Name

Mediator of RNA polymerase II transcription subunit 16

Genbank Nucleotide ID

AAMC01070083

Gene Name

med16

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSXETG00000021641.3	ENSXETT00000046771.3	ENSXETP00000046771.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.60e-06	27.3	69	103

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtg 33
           gH++ +t+l++  s+ +l+s+  Dg ik+W ++++
   Q: 69   GHQEVITSLEWdqSGSRLLSADADGRIKCWGMTDH 103
           8**********965599*************99875 PP

Organism

Xenopus tropicalis

Protein Sequence
(Fasta)

SMDVGYVCEW DKRPRTSHCP SIPLVCAWSC RNLIAFTTDQ RNEEEKDITN LIHILDTEHP 60
WDVYSINSGH QEVITSLEWD QSGSRLLSAD ADGRIKCWGM TDHLANSWQS LVGSEVDGDP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCCATCGGAA AGCGACATTG AGACGCTTAT TCCGTGAGAC GCACTAATGT AGCCGGGAAC 60
TTTCATTACT GGTTTTACGT AGAACCTTGT TATCCTACGG GATTCTGGAA CCAGCAGTAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR021665--Mediator_Med16
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF11635--Med16

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ame-011407	Astyanax mexicanus	73.65	0.00e+00	1223.00
IUUC-Bta-012729	Bos taurus	79.42	0.00e+00	1340.00
IUUC-Cja-019000	Callithrix jacchus	79.27	7.00e-81	292.00
IUUC-Cfa-020876	Canis familiaris	81.33	0.00e+00	1389.00
IUUC-Cpo-021655	Cavia porcellus	80.63	0.00e+00	1353.00
IUUC-Dre-027473	Danio rerio	76.53	0.00e+00	1298.00
IUUC-Dno-029564	Dasypus novemcinctus	82.53	0.00e+00	966.00
IUUC-Eca-033914	Equus caballus	82.24	0.00e+00	810.00
IUUC-Fca-036338	Felis catus	81.43	0.00e+00	738.00
IUUC-Fal-037249	Ficedula albicollis	84.12	0.00e+00	1469.00
IUUC-Gmo-039447	Gadus morhua	71.03	5.00e-166	578.00
IUUC-Gga-041100	Gallus gallus	83.21	0.00e+00	1369.00
IUUC-Gac-042603	Gasterosteus aculeatus	70.79	3.00e-158	552.00
IUUC-Ggo-044794	Gorilla gorilla	83.01	0.00e+00	1045.00
IUUC-Hsa-045722	Homo sapiens	80.72	0.00e+00	724.00
IUUC-Itr-048948	Ictidomys tridecemlineatus	80.56	0.00e+00	1367.00
IUUC-Loc-052871	Lepisosteus oculatus	78.92	0.00e+00	1313.00
IUUC-Mcc-055201	Macaca mulatta	83.17	0.00e+00	1043.00
IUUC-Mga-059807	Meleagris gallopavo	79.76	0.00e+00	1344.00
IUUC-Mmr-060781	Microcebus murinus	79.86	0.00e+00	1374.00
IUUC-Mpu-066388	Mustela putorius furo	80.89	0.00e+00	1373.00
IUUC-Ont-072316	Oreochromis niloticus	75.63	0.00e+00	1261.00
IUUC-Ola-086721	Oryzias latipes	74.34	0.00e+00	1227.00
IUUC-Oga-088875	Otolemur garnettii	82.03	0.00e+00	1370.00
IUUC-Oar-090444	Ovis aries	80.87	0.00e+00	1370.00
IUUC-Ptr-091117	Pan troglodytes	79.52	0.00e+00	714.00
IUUC-Pan-091807	Papio anubis	81.12	0.00e+00	1292.00
IUUC-Pfo-097356	Poecilia formosa	75.72	0.00e+00	1272.00
IUUC-Pab-097953	Pongo abelii	81.36	0.00e+00	1009.00
IUUC-Pca-100896	Procavia capensis	81.27	0.00e+00	1349.00
IUUC-Rno-105038	Rattus norvegicus	80.15	0.00e+00	1367.00
IUUC-Tgu-116750	Taeniopygia guttata	83.75	0.00e+00	1462.00
IUUC-Tru-118405	Takifugu rubripes	75.24	0.00e+00	1288.00
IUUC-Tni-120217	Tetraodon nigroviridis	78.38	0.00e+00	1005.00
IUUC-Ttr-129222	Tursiops truncatus	80.81	0.00e+00	1328.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence