iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Yli-134531

Ensembl Protein ID

CAG83046

UniProt Accession

Q6CEW7; YTM1_YARLI

Genbank Protein ID

CAG83046.1

Protein Name

Ribosome biogenesis protein YTM1

Genbank Nucleotide ID

CR382128

Gene Name

YTM1; YALI0B12320g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
YALI0_B12320g	CAG83046	CAG83046

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.60e-35	117.4	429	469

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt+ v++l+    s+  ll+sGs+Dgt+++WD+rt ++l+
   Q: 429  GHTNFVSSLSRgpeSNpFLLASGSHDGTVRIWDVRTTKSLH 469
           78888999874588665668***************988775 PP

Organism

Yarrowia lipolytica

Functional Description
(View)

Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.

Protein Sequence
(Fasta)

MTNQESQSVK VVFVTRDETL QPEAPLPPVM VPTSLKRLGL SEIVNQLLDT ETPVPLDFLI 60
VKATAGDGGA SILDEESASS SSVLLRPGAS LESFLADNGL SSEVSLSIEY IRSVLPPSFL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGACCAACC AAGAATCGCA GTCGGTCAAG GTGGTCTTCG TGACCCGGGA CGAGACCCTG 60
CAGCCCGAGG CTCCCCTGCC TCCCGTCATG GTCCCTACTT CCCTCAAGCG TCTGGGTCTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0051276--P:chromosome organization
GO:0000460--P:maturation of 5.8S rRNA
GO:0000470--P:maturation of LSU-rRNA

KEGG

yli:YALI0B12320g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	27.76	8.00e-37	145.00
IUUC-Aml-001997	Ailuropoda melanoleuca	26.65	9.00e-25	105.00
IUUC-Atr-002544	Amborella trichopoda	26.17	9.00e-35	139.00
IUUC-Apl-003981	Anas platyrhynchos	27.44	1.00e-30	124.00
IUUC-Aca-004370	Anolis carolinensis	25.21	6.00e-32	129.00
IUUC-Aly-006455	Arabidopsis lyrata	28.38	5.00e-40	156.00
IUUC-Ath-006669	Arabidopsis thaliana	28.57	2.00e-35	140.00
IUUC-Ago-007864	Ashbya gossypii	43.16	5.00e-104	369.00
IUUC-Acl-008177	Aspergillus clavatus	36.01	3.00e-78	283.00
IUUC-Afl-008617	Aspergillus flavus	36.19	3.00e-77	280.00
IUUC-Afu-008752	Aspergillus fumigatus	34.70	6.00e-73	266.00
IUUC-Ani-009136	Aspergillus nidulans	39.28	9.00e-78	281.00
IUUC-Ang-009701	Aspergillus niger	36.04	6.00e-75	272.00
IUUC-Aor-009884	Aspergillus oryzae	36.19	2.00e-77	281.00
IUUC-Ate-010472	Aspergillus terreus	38.83	6.00e-52	195.00
IUUC-Ame-011432	Astyanax mexicanus	25.41	8.00e-32	129.00
IUUC-Bgr-012218	Blumeria graminis	37.64	2.00e-77	280.00
IUUC-Bta-012829	Bos taurus	25.83	4.00e-25	107.00
IUUC-Bci-013953	Botrytis cinerea	34.58	3.00e-77	280.00
IUUC-Bdi-014351	Brachypodium distachyon	28.68	6.00e-35	139.00
IUUC-Bol-016514	Brassica oleracea	28.88	4.00e-40	156.00
IUUC-Bra-016988	Brassica rapa	28.88	4.00e-40	156.00
IUUC-Cja-019468	Callithrix jacchus	27.03	2.00e-23	101.00
IUUC-Cfa-020471	Canis familiaris	25.41	3.00e-23	100.00
IUUC-Cpo-022260	Cavia porcellus	26.82	2.00e-23	101.00
IUUC-Csa-023989	Chlorocebus sabaeus	27.03	3.00e-23	100.00
IUUC-Cho-024426	Choloepus hoffmanni	26.23	3.00e-18	84.00
IUUC-Cin-025789	Ciona intestinalis	24.95	3.00e-23	100.00
IUUC-Cgl-026562	Colletotrichum gloeosporioides	36.92	3.00e-23	99.00
IUUC-Cne-027063	Cryptococcus neoformans	28.14	1.00e-17	82.00
IUUC-Dre-027907	Danio rerio	25.21	4.00e-32	130.00
IUUC-Dno-029225	Dasypus novemcinctus	25.83	3.00e-24	103.00
IUUC-Dse-031308	Dothistroma septosporum	35.42	7.00e-72	262.00
IUUC-Dme-032189	Drosophila melanogaster	25.00	2.00e-27	114.00
IUUC-Ete-032247	Echinops telfairi	24.07	5.00e-18	83.20
IUUC-Eca-034285	Equus caballus	26.03	4.00e-24	103.00
IUUC-Eeu-035322	Erinaceus europaeus	26.36	6.00e-19	86.30
IUUC-Fca-036114	Felis catus	26.65	6.00e-25	106.00
IUUC-Fal-036891	Ficedula albicollis	26.97	9.00e-29	118.00
IUUC-Fox-037965	Fusarium oxysporum	36.26	3.00e-77	280.00
IUUC-Fso-038244	Fusarium solani	36.73	8.00e-76	275.00
IUUC-Gmo-039040	Gadus morhua	27.57	2.00e-37	147.00
IUUC-Ggr-040093	Gaeumannomyces graminis	31.17	5.00e-50	189.00
IUUC-Gga-040610	Gallus gallus	25.81	4.00e-29	120.00
IUUC-Gac-042117	Gasterosteus aculeatus	26.75	4.00e-37	147.00
IUUC-Gma-043425	Glycine max	26.95	1.00e-35	142.00
IUUC-Ggo-045179	Gorilla gorilla	27.03	5.00e-24	103.00
IUUC-Hsa-046114	Homo sapiens	27.03	2.00e-23	101.00
IUUC-Hvu-047331	Hordeum vulgare	26.28	1.00e-28	118.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	25.41	1.00e-24	105.00
IUUC-Kpa-049304	Komagataella pastoris	42.80	3.00e-105	372.00
IUUC-Lpe-051675	Leersia perrieri	28.65	3.00e-37	147.00
IUUC-Loc-052868	Lepisosteus oculatus	26.03	4.00e-33	133.00
IUUC-Lma-053258	Leptosphaeria maculans	33.71	2.00e-68	252.00
IUUC-Laf-053993	Loxodonta africana	26.49	4.00e-25	106.00
IUUC-Meu-056501	Macropus eugenii	25.22	2.00e-23	100.00
IUUC-Mor-057114	Magnaporthe oryzae	32.72	5.00e-66	243.00
IUUC-Mpo-057463	Magnaporthe poae	33.03	3.00e-24	102.00
IUUC-Mtr-058367	Medicago truncatula	27.24	1.00e-30	125.00
IUUC-Mla-059107	Melampsora laricipopulina	28.79	3.00e-42	164.00
IUUC-Mga-059745	Meleagris gallopavo	25.76	4.00e-29	120.00
IUUC-Mvi-060362	Microbotryum violaceum	26.45	1.00e-31	128.00
IUUC-Mdo-062257	Monodelphis domestica	25.41	6.00e-27	113.00
IUUC-Mmu-063546	Mus musculus	25.83	2.00e-25	108.00
IUUC-Mac-065540	Musa acuminata	28.54	3.00e-37	147.00
IUUC-Mpu-066284	Mustela putorius furo	25.83	1.00e-24	105.00
IUUC-Mlu-067241	Myotis lucifugus	25.72	8.00e-24	102.00
IUUC-Nfi-068260	Neosartorya fischeri	34.70	1.00e-75	274.00
IUUC-Ncr-068719	Neurospora crassa	35.30	1.00e-73	268.00
IUUC-Nle-068981	Nomascus leucogenys	26.77	1.00e-22	98.60
IUUC-Opr-071218	Ochotona princeps	23.88	1.00e-19	89.00
IUUC-Ont-071646	Oreochromis niloticus	26.12	5.00e-29	119.00
IUUC-Oan-073453	Ornithorhynchus anatinus	25.83	2.00e-33	134.00
IUUC-Ocu-074008	Oryctolagus cuniculus	25.41	4.00e-24	103.00
IUUC-Oba-075712	Oryza barthii	26.26	7.00e-25	106.00
IUUC-Obr-076721	Oryza brachyantha	27.73	2.00e-35	140.00
IUUC-Ogl-077229	Oryza glaberrima	28.74	6.00e-37	146.00
IUUC-Ogu-078977	Oryza glumaepatula	26.07	1.00e-24	105.00
IUUC-Oin-079683	Oryza indica	28.49	1.00e-36	145.00
IUUC-Olo-080291	Oryza longistaminata	28.41	1.00e-14	71.20
IUUC-Ome-081834	Oryza meridionalis	28.40	5.00e-36	143.00
IUUC-Oni-082507	Oryza nivara	27.96	5.00e-32	129.00
IUUC-Opu-083396	Oryza punctata	28.74	7.00e-37	146.00
IUUC-Oru-085220	Oryza rufipogon	27.96	5.00e-32	129.00
IUUC-Osa-085767	Oryza sativa	28.49	1.00e-36	145.00
IUUC-Ola-087420	Oryzias latipes	26.24	7.00e-34	135.00
IUUC-Olu-087740	Ostreococcus lucimarinus	25.49	8.00e-28	115.00
IUUC-Oga-088264	Otolemur garnettii	25.62	2.00e-23	101.00
IUUC-Oar-089335	Ovis aries	25.83	4.00e-25	107.00
IUUC-Ptr-091320	Pan troglodytes	27.03	2.00e-23	101.00
IUUC-Pan-092833	Papio anubis	27.62	2.00e-22	98.20
IUUC-Psi-093504	Pelodiscus sinensis	26.18	2.00e-27	114.00
IUUC-Pma-094189	Petromyzon marinus	26.23	7.00e-32	129.00
IUUC-Pno-094929	Phaeosphaeria nodorum	35.38	7.00e-73	265.00
IUUC-Ppa-095429	Physcomitrella patens	31.26	9.00e-46	175.00
IUUC-Pfo-096337	Poecilia formosa	25.41	8.00e-34	135.00
IUUC-Pab-097571	Pongo abelii	27.03	2.00e-23	101.00
IUUC-Pop-099977	Populus trichocarpa	28.29	3.00e-39	154.00
IUUC-Pca-100394	Procavia capensis	25.05	2.00e-19	87.80
IUUC-Ppe-101848	Prunus persica	27.45	9.00e-37	145.00
IUUC-Pgr-103637	Puccinia graminis	26.44	5.00e-37	146.00
IUUC-Ptt-103781	Puccinia triticina	27.00	7.00e-39	152.00
IUUC-Pte-104135	Pyrenophora teres	35.66	3.00e-66	245.00
IUUC-Pyt-104609	Pyrenophora triticirepentis	34.54	9.00e-68	248.00
IUUC-Rno-105114	Rattus norvegicus	25.83	2.00e-24	104.00
IUUC-Sce-106401	Saccharomyces cerevisiae	44.64	1.00e-107	380.00
IUUC-Sha-107122	Sarcophilus harrisii	25.33	6.00e-24	103.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	34.11	5.00e-72	262.00
IUUC-Spo-108134	Schizosaccharomyces pombe	35.31	7.00e-73	265.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	34.81	3.00e-81	293.00
IUUC-Smo-108761	Selaginella moellendorffii	27.52	3.00e-33	134.00
IUUC-Sit-110354	Setaria italica	27.55	1.00e-36	145.00
IUUC-Sly-111023	Solanum lycopersicum	28.00	5.00e-38	149.00
IUUC-Stu-112169	Solanum tuberosum	29.31	1.00e-41	162.00
IUUC-Sar-113596	Sorex araneus	28.52	5.00e-21	93.60
IUUC-Sbi-114193	Sorghum bicolor	27.17	3.00e-33	134.00
IUUC-Sre-115002	Sporisorium reilianum	24.69	2.00e-26	111.00
IUUC-Ssc-116066	Sus scrofa	25.62	3.00e-24	103.00
IUUC-Tgu-117048	Taeniopygia guttata	26.97	1.00e-28	118.00
IUUC-Tni-119820	Tetraodon nigroviridis	26.75	1.00e-31	128.00
IUUC-Tca-121605	Theobroma cacao	27.71	2.00e-38	151.00
IUUC-Tre-121947	Trichoderma reesei	36.60	1.00e-77	281.00
IUUC-Tvi-122481	Trichoderma virens	37.24	6.00e-80	289.00
IUUC-Tae-123504	Triticum aestivum	27.76	1.00e-36	145.00
IUUC-Tur-126586	Triticum urartu	26.90	1.00e-30	125.00
IUUC-Tme-126900	Tuber melanosporum	39.11	5.00e-89	319.00
IUUC-Ttr-129041	Tursiops truncatus	33.89	2.00e-17	81.30
IUUC-Uma-129628	Ustilago maydis	26.94	1.00e-19	89.00
IUUC-Vpa-130260	Vicugna pacos	26.13	2.00e-25	108.00
IUUC-Vvi-131009	Vitis vinifera	30.17	1.00e-45	175.00
IUUC-Xtr-132083	Xenopus tropicalis	26.84	1.00e-34	138.00
IUUC-Xma-133094	Xiphophorus maculatus	25.83	1.00e-34	138.00
IUUC-Zma-135509	Zea mays	27.86	3.00e-39	153.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence