iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006717

UUCD1 version

UUC-ArT-00139

Ensembl Protein ID

AT5G19080.1

UniProt Accession

Q84ME1; Q8L7V9; LUL3_ARATH

Genbank Protein ID

AED92649.1; AAM78102.1; AAP21165.1

Protein Name

Probable E3 ubiquitin-protein ligase LUL3; Probable RING-type E3 ubiquitin transferase LUL3; Protein LOG2-LIKE UBIQUITIN LIGASE 3; RING finger protein 398

Genbank Nucleotide ID

AC068809; AY125510; BT006357

Gene Name

LUL3; RF398; At5g19080; T16G12.120

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT5G19080	AT5G19080.1	AT5G19080.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	23824688

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	0.00018	22.8	321	360

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgH.vfhadClqkwpglknssskefrCPlCr 46
           C iCl+++kd + v+pC H + + dC + +        ++ +CP+Cr
   Q: 321  CVICLTEPKD-TAVMPCRHlCLCSDCAEEL------RFQTNKCPICR 360
           **********.999*****888*****999......99999*****8 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Acts as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates (in vitro).

Protein Sequence
(Fasta)

MGISLSKRRR DNNNNHHHPH HNPPYYYSDP PPQQPPPQNG YSYSHNYPVS TPQLSLPPPP 60
AQPPSSSQPP PSQISYRPYG QNYHQNQYYP QQAPPYFTGY HHNGFNPMMR PVYFGPTPVA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTCATGTATG TGTGTTTTCT AGATTTGAAC AAGAAGAAAC GGTCTTGTCT CTTTCGTTAG 60
ACGGTCATGT CTTCGGGAAC ATCCGATTAA AAAAAAAGTT ACACGCGTTG ACTTTTATTA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0449--Lipoprotein
KW-0479--Metal-binding
KW-0519--Myristate
KW-1185--Reference proteome
KW-0808--Transferase
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001370--BIR_rpt
IPR001841--Znf_RING

PROSITE

PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding

KEGG

ath:AT5G19080

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000571	Aegilops tauschii	55.81	9.00e-77	278.00
IUUC-Aml-001585	Ailuropoda melanoleuca	35.38	1.00e-34	140.00
IUUC-Atr-002988	Amborella trichopoda	47.93	7.00e-75	273.00
IUUC-Aca-005323	Anolis carolinensis	34.30	3.00e-35	142.00
IUUC-Aly-006094	Arabidopsis lyrata	89.56	3.00e-132	463.00
IUUC-Afu-008875	Aspergillus fumigatus	36.76	1.00e-06	48.50
IUUC-Ani-009486	Aspergillus nidulans	39.71	3.00e-08	53.90
IUUC-Ang-009625	Aspergillus niger	40.38	4.00e-07	49.70
IUUC-Ame-011921	Astyanax mexicanus	32.27	2.00e-31	129.00
IUUC-Bta-012862	Bos taurus	33.58	1.00e-34	140.00
IUUC-Bci-013653	Botrytis cinerea	38.57	3.00e-07	50.40
IUUC-Bdi-014389	Brachypodium distachyon	54.09	3.00e-74	271.00
IUUC-Bol-015239	Brassica oleracea	72.43	8.00e-127	446.00
IUUC-Bra-017202	Brassica rapa	72.57	1.00e-127	448.00
IUUC-Cel-018246	Caenorhabditis elegans	31.48	1.00e-28	120.00
IUUC-Cja-019631	Callithrix jacchus	35.74	7.00e-35	141.00
IUUC-Cfa-020349	Canis familiaris	34.67	1.00e-34	140.00
IUUC-Cpo-021811	Cavia porcellus	34.31	9.00e-35	141.00
IUUC-Csa-023395	Chlorocebus sabaeus	35.02	8.00e-35	141.00
IUUC-Cho-025077	Choloepus hoffmanni	35.20	2.00e-30	126.00
IUUC-Csv-026316	Ciona savignyi	44.44	3.00e-08	52.80
IUUC-Cne-026964	Cryptococcus neoformans	31.08	7.00e-08	52.00
IUUC-Dre-028259	Danio rerio	35.02	2.00e-35	143.00
IUUC-Dno-029086	Dasypus novemcinctus	32.81	1.00e-32	134.00
IUUC-Dme-032190	Drosophila melanogaster	34.70	2.00e-30	127.00
IUUC-Ete-032357	Echinops telfairi	32.53	2.00e-24	106.00
IUUC-Eca-034366	Equus caballus	35.48	9.00e-36	144.00
IUUC-Eeu-035065	Erinaceus europaeus	34.31	1.00e-34	140.00
IUUC-Fca-036010	Felis catus	34.31	3.00e-35	142.00
IUUC-Fal-036941	Ficedula albicollis	35.38	5.00e-35	142.00
IUUC-Fox-037917	Fusarium oxysporum	35.09	2.00e-06	46.20
IUUC-Gmo-039258	Gadus morhua	33.12	3.00e-35	142.00
IUUC-Ggr-039953	Gaeumannomyces graminis	36.36	2.00e-05	44.70
IUUC-Gga-041217	Gallus gallus	33.57	2.00e-34	139.00
IUUC-Gac-041283	Gasterosteus aculeatus	35.87	8.00e-37	147.00
IUUC-Gma-044389	Glycine max	62.02	6.00e-90	323.00
IUUC-Ggo-045064	Gorilla gorilla	32.91	8.00e-35	140.00
IUUC-Hsa-047019	Homo sapiens	35.38	4.00e-35	142.00
IUUC-Hvu-047318	Hordeum vulgare	56.13	2.00e-76	278.00
IUUC-Itr-048203	Ictidomys tridecemlineatus	35.32	1.00e-34	140.00
IUUC-Lch-049545	Latimeria chalumnae	34.55	7.00e-35	140.00
IUUC-Loc-052066	Lepisosteus oculatus	34.89	4.00e-35	142.00
IUUC-Lma-053195	Leptosphaeria maculans	28.40	1.00e-05	43.90
IUUC-Laf-054217	Loxodonta africana	32.98	4.00e-33	135.00
IUUC-Mcc-055553	Macaca mulatta	35.04	4.00e-35	142.00
IUUC-Meu-056334	Macropus eugenii	47.52	1.00e-23	104.00
IUUC-Mor-057032	Magnaporthe oryzae	31.25	3.00e-06	47.00
IUUC-Mtr-057716	Medicago truncatula	59.02	5.00e-79	286.00
IUUC-Mmr-060592	Microcebus murinus	35.94	5.00e-32	132.00
IUUC-Mdo-062367	Monodelphis domestica	34.67	2.00e-35	143.00
IUUC-Mmu-063998	Mus musculus	33.57	3.00e-34	139.00
IUUC-Mac-064637	Musa acuminata	54.09	2.00e-77	281.00
IUUC-Mpu-066546	Mustela putorius furo	34.66	2.00e-34	139.00
IUUC-Mlu-067226	Myotis lucifugus	33.33	1.00e-33	137.00
IUUC-Nle-069248	Nomascus leucogenys	33.94	4.00e-35	142.00
IUUC-Opr-070507	Ochotona princeps	34.48	1.00e-34	140.00
IUUC-Ont-072511	Oreochromis niloticus	35.87	5.00e-36	145.00
IUUC-Oan-073619	Ornithorhynchus anatinus	34.51	2.00e-34	139.00
IUUC-Ocu-074064	Oryctolagus cuniculus	32.70	2.00e-34	139.00
IUUC-Oba-075139	Oryza barthii	56.30	1.00e-78	285.00
IUUC-Ogl-077947	Oryza glaberrima	56.30	1.00e-78	285.00
IUUC-Oin-079339	Oryza indica	56.35	2.00e-78	285.00
IUUC-Opu-083704	Oryza punctata	55.51	5.00e-77	280.00
IUUC-Osa-086018	Oryza sativa	55.91	3.00e-78	284.00
IUUC-Ola-087136	Oryzias latipes	34.78	7.00e-35	141.00
IUUC-Oga-088990	Otolemur garnettii	32.38	4.00e-34	138.00
IUUC-Oar-089864	Ovis aries	32.85	2.00e-34	140.00
IUUC-Ptr-091277	Pan troglodytes	35.02	4.00e-35	142.00
IUUC-Pan-092197	Papio anubis	35.74	7.00e-35	141.00
IUUC-Pma-094119	Petromyzon marinus	34.26	5.00e-33	135.00
IUUC-Pfo-096791	Poecilia formosa	34.78	3.00e-35	142.00
IUUC-Pab-097992	Pongo abelii	32.59	5.00e-35	141.00
IUUC-Pop-099780	Populus trichocarpa	56.34	6.00e-84	303.00
IUUC-Pva-102362	Pteropus vampyrus	32.38	2.00e-34	139.00
IUUC-Rno-105572	Rattus norvegicus	31.75	8.00e-32	130.00
IUUC-Sha-106853	Sarcophilus harrisii	34.66	4.00e-35	142.00
IUUC-Sit-110514	Setaria italica	57.26	2.00e-74	271.00
IUUC-Sbi-113960	Sorghum bicolor	57.94	5.00e-79	286.00
IUUC-Sre-115067	Sporisorium reilianum	30.23	1.00e-07	51.60
IUUC-Ssc-116233	Sus scrofa	33.94	5.00e-35	142.00
IUUC-Tru-117626	Takifugu rubripes	35.14	1.00e-36	147.00
IUUC-Tsy-119129	Tarsius syrichta	38.15	3.00e-28	119.00
IUUC-Tni-119712	Tetraodon nigroviridis	35.64	8.00e-37	147.00
IUUC-Tca-121006	Theobroma cacao	62.20	2.00e-91	328.00
IUUC-Tae-124965	Triticum aestivum	56.30	3.00e-76	277.00
IUUC-Tur-126424	Triticum urartu	55.81	9.00e-77	278.00
IUUC-Tme-127014	Tuber melanosporum	35.59	9.00e-07	43.90
IUUC-Tbe-127764	Tupaia belangeri	33.95	1.00e-27	117.00
IUUC-Ttr-129060	Tursiops truncatus	33.58	1.00e-34	140.00
IUUC-Uma-129528	Ustilago maydis	28.79	8.00e-05	42.00
IUUC-Vda-129694	Verticillium dahliae	35.21	1.00e-06	48.50
IUUC-Vpa-130238	Vicugna pacos	45.54	1.00e-23	103.00
IUUC-Xtr-132414	Xenopus tropicalis	33.57	8.00e-31	127.00
IUUC-Xma-133708	Xiphophorus maculatus	35.48	2.00e-35	142.00
IUUC-Zma-134753	Zea mays	56.37	6.00e-76	276.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence