iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Cgl-026649

Ensembl Protein ID

ELA37699

UniProt Accession

L2GGA5; L2GGA5_COLGN

Genbank Protein ID

ELA37699.1

Protein Name

Coatomer subunit beta'

Genbank Nucleotide ID

KB020362

Gene Name

CGGC5_3021

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
CGGC5_3021	ELA37699	ELA37699

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.70e-26	90.2	146	179
UBD/Beta-Prp	5.20e-51	173.2	13	144

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 5    svtclaf...sd.tllvsGsdDgtikvWDlrtgv 34
           +v+ +++   sd ++l++ sdD t+kvWD++t  
   Q: 146  GVNHVDYyphSDkPYLLTTSDDRTVKVWDYTTKS 179
           4899998899999****************99876 PP

UBD/Beta-Prp

   S: 10   ksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklv 110
           +++++ ++f+p++++++t+ ++g + +w+++t++ +++++  + +v+a +f  +++++v gs+D  i+v++++t++ + ++++h d++++++++p++ +++
   Q: 13   SERVKGIDFHPQEPWILTTLYSGHVYIWSYETQQIVKTFELTDVPVRAGRFVARKNWIVCGSDDFQIRVYNYNTSEKITSFEAHPDYIRAIAVHPTQPFVL 113
           678999*********************************************************************************************** PP
   S: 111  sGshdrtirvwdletgqclee...tlsghdg 138
           ++s+d ti++wd+e+g+++ +   tl+ h++
   Q: 114  TASDDMTIKLWDWEKGWKSATpnfTLEAHEA 144
           *******************988885555543 PP

Organism

Colletotrichum gloeosporioides

Functional Description
(View)

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Protein Sequence
(Fasta)

MKVDVKRQLF ARSERVKGID FHPQEPWILT TLYSGHVYIW SYETQQIVKT FELTDVPVRA 60
GRFVARKNWI VCGSDDFQIR VYNYNTSEKI TSFEAHPDYI RAIAVHPTQP FVLTASDDMT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAAGGTCG ACGTCAAGGT ACGTCTCATC TCAATCTAAT CCCCAGAGCT TTCTCTGTCG 60
CATGGGAATG GCAGCTCCTT GGCAGCGTTC GCGATAGCTC CACAGCTGTC GCCAGTCTGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011048--Haem_d1
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04053--Coatomer_WDAD
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0030126--C:COPI vesicle coat
GO:0005829--C:cytosol
GO:0000139--C:Golgi membrane
GO:0005634--C:nucleus
GO:0005198--F:structural molecule activity
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0006886--P:intracellular protein transport
GO:0032511--P:late endosome to vacuole transport via multivesicular body sorting pathway
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000654	Aegilops tauschii	41.61	0.00e+00	664.00
IUUC-Aml-002154	Ailuropoda melanoleuca	46.57	0.00e+00	757.00
IUUC-Atr-003090	Amborella trichopoda	46.49	0.00e+00	687.00
IUUC-Apl-003976	Anas platyrhynchos	47.09	0.00e+00	757.00
IUUC-Aca-004301	Anolis carolinensis	47.09	0.00e+00	761.00
IUUC-Aly-006508	Arabidopsis lyrata	44.80	0.00e+00	708.00
IUUC-Ath-007635	Arabidopsis thaliana	44.76	0.00e+00	710.00
IUUC-Ago-007914	Ashbya gossypii	41.75	6.00e-180	622.00
IUUC-Acl-008237	Aspergillus clavatus	65.82	0.00e+00	1105.00
IUUC-Afl-008535	Aspergillus flavus	66.06	0.00e+00	1053.00
IUUC-Afu-008845	Aspergillus fumigatus	66.02	0.00e+00	1068.00
IUUC-Ani-009135	Aspergillus nidulans	65.74	0.00e+00	1042.00
IUUC-Ang-009654	Aspergillus niger	67.88	0.00e+00	930.00
IUUC-Aor-009939	Aspergillus oryzae	65.61	0.00e+00	1113.00
IUUC-Ate-010355	Aspergillus terreus	66.26	0.00e+00	1062.00
IUUC-Ame-010922	Astyanax mexicanus	42.68	0.00e+00	629.00
IUUC-Bgr-012249	Blumeria graminis	68.32	0.00e+00	1112.00
IUUC-Bta-013579	Bos taurus	49.13	0.00e+00	696.00
IUUC-Bci-013866	Botrytis cinerea	72.58	0.00e+00	1127.00
IUUC-Bdi-015046	Brachypodium distachyon	44.01	0.00e+00	699.00
IUUC-Bol-015466	Brassica oleracea	43.90	0.00e+00	689.00
IUUC-Bra-016617	Brassica rapa	43.78	0.00e+00	686.00
IUUC-Cel-018387	Caenorhabditis elegans	43.43	0.00e+00	685.00
IUUC-Cja-019145	Callithrix jacchus	46.69	0.00e+00	758.00
IUUC-Cfa-020564	Canis familiaris	46.63	0.00e+00	758.00
IUUC-Cpo-022201	Cavia porcellus	46.76	0.00e+00	759.00
IUUC-Cre-022938	Chlamydomonas reinhardtii	43.77	0.00e+00	629.00
IUUC-Csa-023383	Chlorocebus sabaeus	46.07	1.00e-154	538.00
IUUC-Cho-024454	Choloepus hoffmanni	46.90	0.00e+00	700.00
IUUC-Cin-025681	Ciona intestinalis	44.43	0.00e+00	668.00
IUUC-Csv-026012	Ciona savignyi	44.55	0.00e+00	661.00
IUUC-Cne-026986	Cryptococcus neoformans	50.12	0.00e+00	810.00
IUUC-Cme-027219	Cyanidioschyzon merolae	36.76	5.00e-164	570.00
IUUC-Dre-027846	Danio rerio	46.96	0.00e+00	759.00
IUUC-Dor-030462	Dipodomys ordii	51.27	0.00e+00	722.00
IUUC-Dse-031268	Dothistroma septosporum	63.94	0.00e+00	1038.00
IUUC-Dme-031791	Drosophila melanogaster	43.61	0.00e+00	686.00
IUUC-Ete-033166	Echinops telfairi	52.14	6.00e-179	619.00
IUUC-Eca-034180	Equus caballus	47.56	0.00e+00	777.00
IUUC-Eeu-035086	Erinaceus europaeus	43.75	6.00e-101	360.00
IUUC-Fca-036265	Felis catus	46.57	0.00e+00	757.00
IUUC-Fal-037202	Ficedula albicollis	49.07	0.00e+00	747.00
IUUC-Fox-037711	Fusarium oxysporum	75.33	0.00e+00	1127.00
IUUC-Fso-038268	Fusarium solani	74.85	0.00e+00	1123.00
IUUC-Gmo-039046	Gadus morhua	46.59	0.00e+00	750.00
IUUC-Ggr-039863	Gaeumannomyces graminis	76.89	0.00e+00	1171.00
IUUC-Gga-041112	Gallus gallus	46.88	0.00e+00	761.00
IUUC-Gac-041733	Gasterosteus aculeatus	46.59	0.00e+00	720.00
IUUC-Gma-044333	Glycine max	45.43	0.00e+00	724.00
IUUC-Ggo-044984	Gorilla gorilla	46.57	0.00e+00	757.00
IUUC-Hsa-046698	Homo sapiens	46.57	0.00e+00	757.00
IUUC-Hvu-047669	Hordeum vulgare	42.34	8.00e-81	291.00
IUUC-Itr-048212	Ictidomys tridecemlineatus	46.63	0.00e+00	756.00
IUUC-Kpa-049265	Komagataella pastoris	47.34	0.00e+00	755.00
IUUC-Lch-050473	Latimeria chalumnae	46.47	0.00e+00	751.00
IUUC-Lpe-051579	Leersia perrieri	44.07	0.00e+00	698.00
IUUC-Loc-052675	Lepisosteus oculatus	46.59	0.00e+00	756.00
IUUC-Lma-053218	Leptosphaeria maculans	61.99	0.00e+00	987.00
IUUC-Laf-053757	Loxodonta africana	48.78	0.00e+00	806.00
IUUC-Mcc-054859	Macaca mulatta	46.57	0.00e+00	757.00
IUUC-Meu-056174	Macropus eugenii	47.52	6.00e-90	323.00
IUUC-Mor-057264	Magnaporthe oryzae	74.64	0.00e+00	1134.00
IUUC-Mpo-057538	Magnaporthe poae	76.41	0.00e+00	1189.00
IUUC-Mtr-058310	Medicago truncatula	44.70	0.00e+00	724.00
IUUC-Mla-058937	Melampsora laricipopulina	47.72	0.00e+00	756.00
IUUC-Mga-059875	Meleagris gallopavo	46.64	0.00e+00	759.00
IUUC-Mvi-060240	Microbotryum violaceum	47.99	0.00e+00	754.00
IUUC-Mmr-061261	Microcebus murinus	46.57	0.00e+00	757.00
IUUC-Mdo-062076	Monodelphis domestica	46.76	0.00e+00	762.00
IUUC-Mmu-063324	Mus musculus	46.45	0.00e+00	757.00
IUUC-Mac-064636	Musa acuminata	43.03	0.00e+00	699.00
IUUC-Mpu-065961	Mustela putorius furo	46.57	0.00e+00	757.00
IUUC-Mlu-067059	Myotis lucifugus	45.90	0.00e+00	741.00
IUUC-Nfi-068277	Neosartorya fischeri	65.94	0.00e+00	1059.00
IUUC-Ncr-068659	Neurospora crassa	69.81	0.00e+00	1129.00
IUUC-Nle-069034	Nomascus leucogenys	46.57	0.00e+00	757.00
IUUC-Opr-070334	Ochotona princeps	49.39	0.00e+00	739.00
IUUC-Ont-071563	Oreochromis niloticus	46.15	0.00e+00	743.00
IUUC-Oan-073416	Ornithorhynchus anatinus	49.07	0.00e+00	747.00
IUUC-Ocu-074522	Oryctolagus cuniculus	46.57	0.00e+00	754.00
IUUC-Oba-075760	Oryza barthii	43.33	0.00e+00	698.00
IUUC-Obr-076163	Oryza brachyantha	43.69	0.00e+00	691.00
IUUC-Ogl-077450	Oryza glaberrima	43.82	0.00e+00	715.00
IUUC-Ogu-078994	Oryza glumaepatula	43.33	0.00e+00	697.00
IUUC-Oin-079856	Oryza indica	44.09	0.00e+00	689.00
IUUC-Olo-080731	Oryza longistaminata	45.20	0.00e+00	693.00
IUUC-Ome-081554	Oryza meridionalis	49.81	0.00e+00	796.00
IUUC-Oni-082324	Oryza nivara	43.57	0.00e+00	705.00
IUUC-Opu-083400	Oryza punctata	43.47	0.00e+00	690.00
IUUC-Oru-084829	Oryza rufipogon	43.57	0.00e+00	705.00
IUUC-Osa-086026	Oryza sativa	44.13	0.00e+00	718.00
IUUC-Ola-087245	Oryzias latipes	46.65	0.00e+00	751.00
IUUC-Olu-087655	Ostreococcus lucimarinus	45.28	0.00e+00	699.00
IUUC-Oga-088163	Otolemur garnettii	44.44	0.00e+00	707.00
IUUC-Oar-089842	Ovis aries	46.57	0.00e+00	758.00
IUUC-Ptr-090501	Pan troglodytes	46.57	0.00e+00	758.00
IUUC-Pan-092011	Papio anubis	46.57	0.00e+00	757.00
IUUC-Psi-093308	Pelodiscus sinensis	46.87	0.00e+00	759.00
IUUC-Pma-094695	Petromyzon marinus	47.38	0.00e+00	714.00
IUUC-Pno-094785	Phaeosphaeria nodorum	70.79	2.00e-125	441.00
IUUC-Ppa-095638	Physcomitrella patens	45.25	0.00e+00	714.00
IUUC-Pfo-096587	Poecilia formosa	46.65	0.00e+00	752.00
IUUC-Pab-097926	Pongo abelii	46.71	0.00e+00	729.00
IUUC-Pop-099634	Populus trichocarpa	45.50	0.00e+00	728.00
IUUC-Pca-100965	Procavia capensis	45.58	0.00e+00	732.00
IUUC-Ppe-101470	Prunus persica	45.50	0.00e+00	725.00
IUUC-Pva-102451	Pteropus vampyrus	53.36	0.00e+00	766.00
IUUC-Pgr-103453	Puccinia graminis	49.34	0.00e+00	780.00
IUUC-Ptt-103868	Puccinia triticina	49.22	0.00e+00	779.00
IUUC-Pte-104274	Pyrenophora teres	64.11	0.00e+00	1025.00
IUUC-Pyt-104794	Pyrenophora triticirepentis	70.00	0.00e+00	1103.00
IUUC-Rno-105979	Rattus norvegicus	46.25	0.00e+00	688.00
IUUC-Sce-106269	Saccharomyces cerevisiae	43.10	0.00e+00	663.00
IUUC-Sha-106905	Sarcophilus harrisii	46.63	0.00e+00	759.00
IUUC-Sja-107838	Schizosaccharomyces japonicus	42.44	0.00e+00	653.00
IUUC-Spo-108299	Schizosaccharomyces pombe	44.67	0.00e+00	698.00
IUUC-Smo-108828	Selaginella moellendorffii	44.01	0.00e+00	700.00
IUUC-Sit-110239	Setaria italica	39.35	2.00e-179	620.00
IUUC-Sly-111775	Solanum lycopersicum	45.01	0.00e+00	703.00
IUUC-Stu-112906	Solanum tuberosum	46.22	0.00e+00	675.00
IUUC-Sar-113472	Sorex araneus	53.29	0.00e+00	701.00
IUUC-Sbi-114052	Sorghum bicolor	44.62	0.00e+00	717.00
IUUC-Sre-115040	Sporisorium reilianum	47.71	0.00e+00	763.00
IUUC-Ssc-115593	Sus scrofa	46.45	0.00e+00	756.00
IUUC-Tgu-117239	Taeniopygia guttata	47.21	0.00e+00	761.00
IUUC-Tru-118025	Takifugu rubripes	46.59	0.00e+00	744.00
IUUC-Tsy-118824	Tarsius syrichta	47.55	3.00e-179	620.00
IUUC-Tni-120142	Tetraodon nigroviridis	46.65	0.00e+00	750.00
IUUC-Tca-121613	Theobroma cacao	45.49	0.00e+00	724.00
IUUC-Tre-122072	Trichoderma reesei	71.81	0.00e+00	1138.00
IUUC-Tvi-122546	Trichoderma virens	72.26	0.00e+00	1143.00
IUUC-Tae-125488	Triticum aestivum	44.27	0.00e+00	714.00
IUUC-Tur-126283	Triticum urartu	40.39	2.00e-168	584.00
IUUC-Tme-127041	Tuber melanosporum	63.45	0.00e+00	1050.00
IUUC-Tbe-127770	Tupaia belangeri	44.56	3.00e-171	593.00
IUUC-Ttr-129294	Tursiops truncatus	46.69	0.00e+00	764.00
IUUC-Uma-129351	Ustilago maydis	47.96	0.00e+00	799.00
IUUC-Vda-129716	Verticillium dahliae	76.05	0.00e+00	1222.00
IUUC-Vpa-130037	Vicugna pacos	45.68	9.00e-111	392.00
IUUC-Vvi-131689	Vitis vinifera	46.46	0.00e+00	729.00
IUUC-Xtr-132633	Xenopus tropicalis	45.77	0.00e+00	751.00
IUUC-Xma-133347	Xiphophorus maculatus	46.53	0.00e+00	750.00
IUUC-Yli-134455	Yarrowia lipolytica	51.66	0.00e+00	808.00
IUUC-Zma-135867	Zea mays	44.55	0.00e+00	716.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence