iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Dre-028585

Ensembl Protein ID

ENSDARP00000072618.4

UniProt Accession

F1R3G8; F1R3G8_DANRE

Genbank Protein ID

ENSDARP00000072618

Protein Name

Spermidine synthase

Genbank Nucleotide ID

CR354431

Gene Name

srm

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000055760.4	ENSDART00000078156.4	ENSDARP00000072618.4

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 adaptor/Cullin RING/SCF/F-box	28.85	1.00e-03	30.80	IUUC-Ots-000041

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Danio rerio

Protein Sequence
(Fasta)

MDNIKDGWFT ETCTLWPGQA MSLQVEEVLY HKKSKFQDVM VFKSKTYGNV LILDGVIQCT 60
ERDEFSYQEM IANLPLCCHP CPKKVLIIGG GDGGVLREVV KHPLVESVVQ CEIDEDVINV 120

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Nucleotide Sequence
(Fasta)

CGGTTGCCCC GCAAAGAACG CCCAACGTGT CAGTCGGCGC TCAAGATCTC CAGTAACTCT 60
CCTTGCAGTG AAGTAGTTTG ACCAGACAAT TTAAACCCAC CGCCGCACTG ATTTAAACCC 120

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Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0620--Polyamine biosynthesis
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0808--Transferase

Interpro

IPR030374--PABS
IPR030373--PABS_CS
IPR029063--SAM-dependent_MTases
IPR001045--Spermi_synthase
IPR030668--Spermi_synthase_euk

PROSITE

PS01330--PABS_1
PS51006--PABS_2

Gene Ontology

GO:0004766--F:spermidine synthase activity
GO:0008295--P:spermidine biosynthetic process

KEGG

dre:394009

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Cin-025303	Ciona intestinalis	66.32	1.00e-112	399.00
IUUC-Csv-025917	Ciona savignyi	65.03	2.00e-110	391.00
IUUC-Gmo-039381	Gadus morhua	90.14	1.00e-147	515.00
IUUC-Gac-041821	Gasterosteus aculeatus	85.92	5.00e-131	460.00
IUUC-Hsa-046850	Homo sapiens	80.20	1.00e-39	154.00
IUUC-Nle-069521	Nomascus leucogenys	80.31	3.00e-119	421.00
IUUC-Ola-086442	Oryzias latipes	87.89	7.00e-145	506.00
IUUC-Xtr-132478	Xenopus tropicalis	81.91	7.00e-140	489.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence