iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Vvi-131397

UUCD1 version

UUC-ViV-00213

Ensembl Protein ID

VIT_06s0080g00130.t01

UniProt Accession

D7TCX9; D7TCX9_VITVI

Genbank Protein ID

CBI28352.3

Protein Name

Protein HIRA

Genbank Nucleotide ID

FN595757

Gene Name

HIRA; VIT_06s0080g00130

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_06s0080g00130	VIT_06s0080g00130.t01	VIT_06s0080g00130.t01

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.60e-22	76.7	123	160
UBD/Beta-Prp	6.50e-40	137.7	13	213

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gHt++v +l++ +d  +l+sGs D+t++vW+++ g ++
   Q: 123  GHTADVVDLNWsPDdSILASGSLDNTVHVWNMSNGICT 160
           8***********77799**************9998886 PP

UBD/Beta-Prp

   S: 10   ksvitcvkfspdksllatgsrdgtikvwdvttgkl...........lrslsgheaevtavkfspdgkilvtgseDrtikvw....... 79
             +i ++++ p++  +atg+ d+++++w++++              l++l +h + v++v++ ++g + ++gs+D++i +        
   Q: 13   GMQIFSIDIQPGGLRFATGGGDHKVRIWNMKSVGRdlendesvhrlLATLRDHFGSVNCVRWAKHGRYVASGSDDQVILIHewkpgsg 100
           5567789999*********************977799**************************************8777764488888 PP
   S: 80   ..........dlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGsl 157
                     d+++ k  +tl+gh+++v++l++sp+++ l+sGs d+t++vw++++g c   +l+gh+++v +v+++p g+ ++s s+
   Q: 101  ttefgsgeppDVENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTVHVWNMSNGICTA-VLRGHSSLVKGVTWDPIGSFIASQSD 187
           8888888888888************************************************.************************** PP
   S: 158  DrtvrlWdlktgkllrtltgghtdsv 183
           D+tv +W+ +  +l ++  g  t+s 
   Q: 188  DKTVIIWRTSDWSLAHRTDGHWTKSL 213
           ********988888888877545555 PP

Organism

Vitis vinifera

Functional Description
(View)

Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle.

Protein Sequence
(Fasta)

MIAEKPSWIR HEGMQIFSID IQPGGLRFAT GGGDHKVRIW NMKSVGRDLE NDESVHRLLA 60
TLRDHFGSVN CVRWAKHGRY VASGSDDQVI LIHEWKPGSG TTEFGSGEPP DVENWKVAMT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCAGGGATGA TTGCAGAGAA ACCCAGTTGG ATTAGGCATG AGGGCATGCA GATTTTCTCC 60
ATTGATATTC AGCCAGGAGG GCTTAGGTTT GCAACTGGTG GAGGTGACCA CAAGGTACAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0853--WD repeat

Interpro

IPR031120--HIR1
IPR011494--Hira
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF07569--Hira
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0000790--C:nuclear chromatin
GO:0031491--F:nucleosome binding
GO:0003714--F:transcription corepressor activity
GO:0016569--P:covalent chromatin modification
GO:0006336--P:DNA replication-independent nucleosome assembly
GO:0031935--P:regulation of chromatin silencing
GO:0006351--P:transcription, DNA-templated

KEGG

vvi:100264905

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001039	Aegilops tauschii	68.63	0.00e+00	1424.00
IUUC-Aml-001723	Ailuropoda melanoleuca	37.02	4.00e-82	298.00
IUUC-Atr-003132	Amborella trichopoda	71.62	0.00e+00	1430.00
IUUC-Apl-003197	Anas platyrhynchos	36.15	8.00e-82	298.00
IUUC-Aca-004733	Anolis carolinensis	37.00	1.00e-86	313.00
IUUC-Aly-005446	Arabidopsis lyrata	71.24	0.00e+00	1388.00
IUUC-Ath-007627	Arabidopsis thaliana	68.76	0.00e+00	1374.00
IUUC-Ago-007766	Ashbya gossypii	33.80	2.00e-61	229.00
IUUC-Acl-008104	Aspergillus clavatus	32.20	7.00e-68	251.00
IUUC-Afl-008591	Aspergillus flavus	34.03	2.00e-66	246.00
IUUC-Afu-008781	Aspergillus fumigatus	33.40	2.00e-62	233.00
IUUC-Ani-009272	Aspergillus nidulans	29.48	5.00e-54	205.00
IUUC-Ang-009655	Aspergillus niger	32.77	6.00e-68	251.00
IUUC-Aor-010119	Aspergillus oryzae	34.03	3.00e-66	246.00
IUUC-Ate-010530	Aspergillus terreus	29.93	3.00e-53	203.00
IUUC-Bgr-012237	Blumeria graminis	33.68	3.00e-64	239.00
IUUC-Bta-013320	Bos taurus	37.78	4.00e-83	302.00
IUUC-Bci-013795	Botrytis cinerea	31.62	1.00e-72	267.00
IUUC-Bdi-014075	Brachypodium distachyon	71.02	0.00e+00	1461.00
IUUC-Bol-016440	Brassica oleracea	71.30	0.00e+00	1390.00
IUUC-Bra-016651	Brassica rapa	71.00	0.00e+00	1356.00
IUUC-Cel-018692	Caenorhabditis elegans	28.75	8.00e-46	178.00
IUUC-Cja-018987	Callithrix jacchus	35.98	3.00e-74	272.00
IUUC-Cfa-020132	Canis familiaris	36.93	3.00e-82	299.00
IUUC-Cpo-021484	Cavia porcellus	37.23	2.00e-86	313.00
IUUC-Cre-022846	Chlamydomonas reinhardtii	37.34	1.00e-73	270.00
IUUC-Csa-023081	Chlorocebus sabaeus	37.40	2.00e-87	316.00
IUUC-Cin-025182	Ciona intestinalis	37.52	9.00e-86	311.00
IUUC-Csv-026154	Ciona savignyi	37.84	2.00e-85	310.00
IUUC-Cgl-026655	Colletotrichum gloeosporioides	26.05	2.00e-84	306.00
IUUC-Cne-026891	Cryptococcus neoformans	40.05	1.00e-79	290.00
IUUC-Cme-027349	Cyanidioschyzon merolae	28.78	9.00e-52	198.00
IUUC-Dre-027655	Danio rerio	34.85	3.00e-84	305.00
IUUC-Dno-029557	Dasypus novemcinctus	36.16	3.00e-69	256.00
IUUC-Dor-030687	Dipodomys ordii	37.78	2.00e-65	243.00
IUUC-Dse-031334	Dothistroma septosporum	32.62	8.00e-70	258.00
IUUC-Dme-031746	Drosophila melanogaster	37.96	2.00e-86	313.00
IUUC-Ete-032384	Echinops telfairi	33.67	2.00e-64	239.00
IUUC-Eca-033430	Equus caballus	37.22	7.00e-83	301.00
IUUC-Fca-036121	Felis catus	37.18	1.00e-83	303.00
IUUC-Fal-036817	Ficedula albicollis	36.07	2.00e-81	296.00
IUUC-Fox-037906	Fusarium oxysporum	35.14	2.00e-70	259.00
IUUC-Fso-038409	Fusarium solani	25.90	3.00e-86	312.00
IUUC-Gmo-039151	Gadus morhua	40.36	4.00e-82	298.00
IUUC-Ggr-040016	Gaeumannomyces graminis	35.11	3.00e-69	256.00
IUUC-Gga-040936	Gallus gallus	36.96	7.00e-86	311.00
IUUC-Gac-041405	Gasterosteus aculeatus	40.47	2.00e-79	289.00
IUUC-Gma-044252	Glycine max	77.33	0.00e+00	1635.00
IUUC-Ggo-045430	Gorilla gorilla	37.40	2.00e-87	317.00
IUUC-Hsa-046442	Homo sapiens	37.40	1.00e-87	317.00
IUUC-Hvu-047587	Hordeum vulgare	70.08	0.00e+00	1377.00
IUUC-Itr-048910	Ictidomys tridecemlineatus	42.45	4.00e-63	233.00
IUUC-Kpa-049145	Komagataella pastoris	31.06	1.00e-58	220.00
IUUC-Lch-050474	Latimeria chalumnae	36.09	4.00e-80	292.00
IUUC-Lpe-051209	Leersia perrieri	69.53	0.00e+00	1400.00
IUUC-Loc-052119	Lepisosteus oculatus	33.50	8.00e-81	294.00
IUUC-Lma-053237	Leptosphaeria maculans	32.93	1.00e-63	237.00
IUUC-Laf-053718	Loxodonta africana	37.85	2.00e-88	319.00
IUUC-Mcc-055621	Macaca mulatta	36.42	2.00e-74	273.00
IUUC-Meu-055914	Macropus eugenii	40.07	2.00e-54	206.00
IUUC-Mor-057090	Magnaporthe oryzae	35.21	3.00e-68	253.00
IUUC-Mpo-057364	Magnaporthe poae	31.72	1.00e-71	264.00
IUUC-Mtr-057744	Medicago truncatula	74.43	0.00e+00	1580.00
IUUC-Mla-058914	Melampsora laricipopulina	27.29	5.00e-82	298.00
IUUC-Mga-060181	Meleagris gallopavo	36.77	1.00e-81	297.00
IUUC-Mvi-060432	Microbotryum violaceum	32.99	2.00e-58	220.00
IUUC-Mmr-060871	Microcebus murinus	37.33	1.00e-87	317.00
IUUC-Mdo-062301	Monodelphis domestica	36.60	5.00e-86	311.00
IUUC-Mmu-063888	Mus musculus	37.20	2.00e-87	316.00
IUUC-Mac-064768	Musa acuminata	72.64	0.00e+00	1422.00
IUUC-Mpu-066732	Mustela putorius furo	37.02	2.00e-82	299.00
IUUC-Mlu-067542	Myotis lucifugus	37.10	2.00e-83	303.00
IUUC-Nfi-068396	Neosartorya fischeri	33.20	7.00e-62	231.00
IUUC-Ncr-068842	Neurospora crassa	28.06	1.00e-90	327.00
IUUC-Nle-070156	Nomascus leucogenys	37.43	2.00e-87	316.00
IUUC-Opr-070808	Ochotona princeps	40.68	6.00e-53	201.00
IUUC-Ont-072105	Oreochromis niloticus	36.80	2.00e-82	300.00
IUUC-Ocu-074962	Oryctolagus cuniculus	37.42	1.00e-82	300.00
IUUC-Oba-075178	Oryza barthii	72.54	0.00e+00	1392.00
IUUC-Obr-076399	Oryza brachyantha	69.80	0.00e+00	1410.00
IUUC-Ogu-078797	Oryza glumaepatula	72.54	0.00e+00	1392.00
IUUC-Oin-080085	Oryza indica	71.86	0.00e+00	1312.00
IUUC-Olo-081048	Oryza longistaminata	71.08	8.00e-172	597.00
IUUC-Ome-081324	Oryza meridionalis	73.26	0.00e+00	1393.00
IUUC-Oni-082548	Oryza nivara	72.44	0.00e+00	1390.00
IUUC-Opu-084008	Oryza punctata	79.25	0.00e+00	772.00
IUUC-Oru-084339	Oryza rufipogon	72.54	0.00e+00	1392.00
IUUC-Osa-085782	Oryza sativa	72.54	0.00e+00	1392.00
IUUC-Ola-087302	Oryzias latipes	35.12	6.00e-79	288.00
IUUC-Olu-087611	Ostreococcus lucimarinus	35.58	4.00e-157	547.00
IUUC-Oga-087935	Otolemur garnettii	37.35	1.00e-82	300.00
IUUC-Oar-089229	Ovis aries	33.67	1.00e-65	244.00
IUUC-Ptr-090715	Pan troglodytes	37.40	2.00e-87	317.00
IUUC-Pan-092318	Papio anubis	36.97	1.00e-83	303.00
IUUC-Psi-094053	Pelodiscus sinensis	36.38	4.00e-81	295.00
IUUC-Pno-094985	Phaeosphaeria nodorum	32.09	5.00e-59	222.00
IUUC-Ppa-095819	Physcomitrella patens	49.75	0.00e+00	920.00
IUUC-Pfo-096857	Poecilia formosa	35.73	8.00e-80	291.00
IUUC-Pab-098047	Pongo abelii	37.40	2.00e-87	316.00
IUUC-Pop-099865	Populus trichocarpa	80.17	0.00e+00	1648.00
IUUC-Pca-100558	Procavia capensis	49.23	7.00e-49	188.00
IUUC-Ppe-101261	Prunus persica	81.21	0.00e+00	1619.00
IUUC-Pva-102683	Pteropus vampyrus	37.43	4.00e-84	305.00
IUUC-Pgr-103660	Puccinia graminis	35.95	1.00e-60	227.00
IUUC-Ptt-103900	Puccinia triticina	36.22	5.00e-61	228.00
IUUC-Pte-104209	Pyrenophora teres	34.12	3.00e-69	256.00
IUUC-Pyt-104802	Pyrenophora triticirepentis	34.12	2.00e-68	253.00
IUUC-Rno-105566	Rattus norvegicus	37.20	1.00e-87	317.00
IUUC-Sce-106291	Saccharomyces cerevisiae	31.66	3.00e-65	242.00
IUUC-Sha-107514	Sarcophilus harrisii	34.20	4.00e-71	262.00
IUUC-Sja-107833	Schizosaccharomyces japonicus	29.01	6.00e-91	328.00
IUUC-Spo-108162	Schizosaccharomyces pombe	37.62	2.00e-72	266.00
IUUC-Smo-109186	Selaginella moellendorffii	50.97	0.00e+00	920.00
IUUC-Sit-110730	Setaria italica	71.33	0.00e+00	1427.00
IUUC-Sly-111547	Solanum lycopersicum	73.92	0.00e+00	1514.00
IUUC-Stu-112705	Solanum tuberosum	74.31	0.00e+00	1508.00
IUUC-Sar-113222	Sorex araneus	36.81	3.00e-76	279.00
IUUC-Sbi-114272	Sorghum bicolor	72.61	0.00e+00	1416.00
IUUC-Sre-115061	Sporisorium reilianum	34.90	1.00e-72	267.00
IUUC-Ssc-116364	Sus scrofa	37.42	3.00e-83	302.00
IUUC-Tgu-116645	Taeniopygia guttata	35.87	4.00e-81	295.00
IUUC-Tru-117590	Takifugu rubripes	36.65	1.00e-86	313.00
IUUC-Tsy-119212	Tarsius syrichta	42.31	6.00e-70	258.00
IUUC-Tni-119915	Tetraodon nigroviridis	36.06	2.00e-85	310.00
IUUC-Tca-121765	Theobroma cacao	80.62	0.00e+00	1680.00
IUUC-Tre-121887	Trichoderma reesei	35.14	4.00e-61	229.00
IUUC-Tvi-122262	Trichoderma virens	34.43	5.00e-60	225.00
IUUC-Tae-123009	Triticum aestivum	64.53	0.00e+00	910.00
IUUC-Tur-126483	Triticum urartu	70.56	0.00e+00	1454.00
IUUC-Tme-127202	Tuber melanosporum	31.84	2.00e-46	180.00
IUUC-Tbe-127350	Tupaia belangeri	34.40	6.00e-49	188.00
IUUC-Ttr-129077	Tursiops truncatus	34.01	3.00e-72	266.00
IUUC-Uma-129465	Ustilago maydis	37.44	5.00e-74	271.00
IUUC-Vda-129844	Verticillium dahliae	33.65	1.00e-67	250.00
IUUC-Xtr-132057	Xenopus tropicalis	36.09	4.00e-85	308.00
IUUC-Xma-134139	Xiphophorus maculatus	38.26	3.00e-66	245.00
IUUC-Yli-134424	Yarrowia lipolytica	34.66	7.00e-63	235.00
IUUC-Zma-135839	Zea mays	71.47	0.00e+00	1423.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence