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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Sce-106202
Ensembl Protein ID YLR409C
UniProt Accession Q06078; D6VZ43; UTP21_YEAST
Genbank Protein ID AAB82361.1; DAA09709.1
Protein Name U3 small nucleolar RNA-associated protein 21; U three protein 21
Genbank Nucleotide ID U19729; BK006945
Gene Name UTP21; YLR409C; L8084.22
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
YLR409C YLR409C YLR409C
Annotation
mRNA Expression
GEOFFGED
Protein-protein Interaction
IIDiRefIndexHINTMentha
Protein 3D Structure
PDBMMDB
Post-translational Modifications (PTMs)
dbPAFdbPTMUniProtBioGRID
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 5.10e-16 56.7 583 620
UBD/Beta-Prp 3.30e-44 149.7 543 644
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gH++++t+++f ++ + +vs+s D ti+ WDl tg ++
   Q: 583  GHSNRITAFDFsPEgRWIVSASLDSTIRTWDLPTGGCI 620
           8***********99999******************996 PP
   

   UBD/Beta-Prp
   S: 10   ksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklv 110
           +++it++ ++++++l+a + +d +i v d+ t+ ++r+l gh++ +ta +fsp+g ++v++s D ti+ wdl tg c+  +   ++ ++ ++fsp+gd l+
   Q: 543  DAPITAMVYHRSSDLFALALDDLSIVVIDAVTQRVVRQLWGHSNRITAFDFSPEGRWIVSASLDSTIRTWDLPTGGCIDGII-VDNVATNVKFSPNGDLLA 642
           6799*****************************************************************************9.9999999******99998 PP
   S: 111  sG 112
           ++
   Q: 643  TT 644
           75 PP
   
Organism Saccharomyces cerevisiae
Functional Description
(View)

Functional Description


     Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
 Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
Protein Sequence
(Fasta)
MSIDLKKRKV EEDVRSRGKN SKIFSPFRII GNVSNGVPFA TGTLGSTFYI VTCVGKTFQI 60
YDANTLHLLF VSEKETPSSI VALSAHFHYV YAAYENKVGI YKRGIEEHLL ELETDANVEH 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Sce-106202|E3,WD_repeat;UBD,Beta-Prp|Saccharomyces cerevisiae
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGTCTATCG ACTTGAAAAA AAGAAAAGTC GAAGAAGACG TAAGAAGTAG AGGGAAAAAT 60
TCTAAGATAT TTTCCCCTTT CCGGATTATT GGTAATGTTA GCAATGGTGT TCCTTTTGCT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Sce-106202|E3,WD_repeat;UBD,Beta-Prp|Saccharomyces cerevisiae
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0007--Acetylation
KW-0181--Complete proteome
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0687--Ribonucleoprotein
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat
Interpro

IPR024977--Apc4_WD40_dom
IPR011047--Quinoprotein_ADH-like_supfam
IPR007319--SSU_processome_Utp21
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF12894--ANAPC4_WD40
PF04192--Utp21
PF00400--WD40
SMART

SM00320--WD40
Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0034388--C:Pwp2p-containing subcomplex of 90S preribosome
GO:0032040--C:small-subunit processome
GO:0042274--P:ribosomal small subunit biogenesis
GO:0031167--P:rRNA methylation
GO:0006364--P:rRNA processing
KEGG sce:YLR409C
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-001096 Aegilops tauschii 29.99 1.00e-110 392.00
IUUC-Aml-002289 Ailuropoda melanoleuca 31.66 1.00e-120 425.00
IUUC-Atr-002859 Amborella trichopoda 28.98 3.00e-88 317.00
IUUC-Apl-003505 Anas platyrhynchos 29.64 8.00e-98 349.00
IUUC-Aca-004339 Anolis carolinensis 29.39 2.00e-109 388.00
IUUC-Aly-005913 Arabidopsis lyrata 30.13 3.00e-111 394.00
IUUC-Ath-006767 Arabidopsis thaliana 30.85 2.00e-113 401.00
IUUC-Ago-007763 Ashbya gossypii 64.29 0.00e+00 1258.00
IUUC-Acl-008275 Aspergillus clavatus 36.42 5.00e-115 406.00
IUUC-Afl-008457 Aspergillus flavus 37.26 5.00e-121 426.00
IUUC-Afu-008914 Aspergillus fumigatus 36.76 1.00e-122 431.00
IUUC-Ani-009225 Aspergillus nidulans 34.82 1.00e-133 468.00
IUUC-Aor-010046 Aspergillus oryzae 34.43 5.00e-151 526.00
IUUC-Ate-010337 Aspergillus terreus 34.50 3.00e-145 507.00
IUUC-Ame-010963 Astyanax mexicanus 30.10 3.00e-106 377.00
IUUC-Bgr-011973 Blumeria graminis 35.12 2.00e-151 527.00
IUUC-Bta-012462 Bos taurus 31.95 2.00e-118 418.00
IUUC-Bci-013940 Botrytis cinerea 34.40 6.00e-158 549.00
IUUC-Bdi-014725 Brachypodium distachyon 29.78 1.00e-109 388.00
IUUC-Bol-016534 Brassica oleracea 30.16 6.00e-108 383.00
IUUC-Bra-016781 Brassica rapa 29.88 1.00e-103 369.00
IUUC-Cel-018581 Caenorhabditis elegans 26.44 3.00e-59 221.00
IUUC-Cja-019675 Callithrix jacchus 31.72 1.00e-128 451.00
IUUC-Cfa-020118 Canis familiaris 31.21 3.00e-117 414.00
IUUC-Cpo-021798 Cavia porcellus 31.90 4.00e-122 430.00
IUUC-Cre-022566 Chlamydomonas reinhardtii 29.82 1.00e-28 119.00
IUUC-Csa-023547 Chlorocebus sabaeus 31.76 2.00e-118 417.00
IUUC-Cho-024518 Choloepus hoffmanni 32.48 4.00e-55 207.00
IUUC-Cin-025339 Ciona intestinalis 29.44 1.00e-111 395.00
IUUC-Cgl-026476 Colletotrichum gloeosporioides 34.41 2.00e-144 504.00
IUUC-Cne-026859 Cryptococcus neoformans 34.18 2.00e-137 481.00
IUUC-Cme-027173 Cyanidioschyzon merolae 26.17 2.00e-60 225.00
IUUC-Dre-027733 Danio rerio 30.84 9.00e-109 385.00
IUUC-Dno-029439 Dasypus novemcinctus 32.27 1.00e-120 425.00
IUUC-Dor-030329 Dipodomys ordii 33.87 2.00e-62 231.00
IUUC-Dse-031511 Dothistroma septosporum 33.04 6.00e-127 446.00
IUUC-Dme-031694 Drosophila melanogaster 29.23 3.00e-99 354.00
IUUC-Ete-032930 Echinops telfairi 32.27 1.00e-107 382.00
IUUC-Eca-033302 Equus caballus 32.44 5.00e-120 423.00
IUUC-Eeu-034516 Erinaceus europaeus 31.54 2.00e-126 444.00
IUUC-Fca-036064 Felis catus 31.78 2.00e-120 424.00
IUUC-Fal-037024 Ficedula albicollis 29.30 5.00e-110 390.00
IUUC-Fox-037787 Fusarium oxysporum 34.19 8.00e-135 472.00
IUUC-Fso-038378 Fusarium solani 34.00 7.00e-139 486.00
IUUC-Gmo-039637 Gadus morhua 30.97 6.00e-69 253.00
IUUC-Ggr-040108 Gaeumannomyces graminis 33.24 3.00e-140 491.00
IUUC-Gga-040982 Gallus gallus 29.74 6.00e-118 416.00
IUUC-Gac-041565 Gasterosteus aculeatus 30.47 6.00e-103 366.00
IUUC-Gma-043414 Glycine max 30.99 3.00e-115 407.00
IUUC-Ggo-045463 Gorilla gorilla 31.87 4.00e-121 427.00
IUUC-Hsa-045675 Homo sapiens 31.83 3.00e-122 430.00
IUUC-Hvu-047352 Hordeum vulgare 29.36 2.00e-101 361.00
IUUC-Itr-048088 Ictidomys tridecemlineatus 31.78 1.00e-128 451.00
IUUC-Kpa-049164 Komagataella pastoris 56.32 0.00e+00 1021.00
IUUC-Lch-050476 Latimeria chalumnae 30.27 6.00e-117 413.00
IUUC-Lpe-051556 Leersia perrieri 27.98 9.00e-73 266.00
IUUC-Loc-052820 Lepisosteus oculatus 29.58 6.00e-112 396.00
IUUC-Lma-052961 Leptosphaeria maculans 33.87 7.00e-130 456.00
IUUC-Laf-054006 Loxodonta africana 32.55 2.00e-115 407.00
IUUC-Mcc-055037 Macaca mulatta 31.72 4.00e-121 427.00
IUUC-Mor-057280 Magnaporthe oryzae 34.52 5.00e-148 516.00
IUUC-Mpo-057408 Magnaporthe poae 33.02 4.00e-132 464.00
IUUC-Mtr-058473 Medicago truncatula 32.13 3.00e-120 424.00
IUUC-Mla-058892 Melampsora laricipopulina 31.11 2.00e-97 348.00
IUUC-Mga-059598 Meleagris gallopavo 27.04 5.00e-84 303.00
IUUC-Mvi-060334 Microbotryum violaceum 32.50 2.00e-110 392.00
IUUC-Mmr-061239 Microcebus murinus 31.61 1.00e-117 415.00
IUUC-Mdo-062471 Monodelphis domestica 30.89 4.00e-111 393.00
IUUC-Mmu-063872 Mus musculus 31.67 4.00e-124 436.00
IUUC-Mac-064631 Musa acuminata 29.10 3.00e-87 314.00
IUUC-Mpu-066039 Mustela putorius furo 31.63 5.00e-128 449.00
IUUC-Mlu-067485 Myotis lucifugus 32.25 3.00e-119 420.00
IUUC-Nfi-068319 Neosartorya fischeri 33.68 2.00e-134 471.00
IUUC-Ncr-068725 Neurospora crassa 33.65 1.00e-134 472.00
IUUC-Nle-069050 Nomascus leucogenys 32.06 3.00e-123 434.00
IUUC-Opr-070437 Ochotona princeps 30.04 8.00e-27 113.00
IUUC-Ont-071574 Oreochromis niloticus 31.63 6.00e-111 393.00
IUUC-Oan-072826 Ornithorhynchus anatinus 30.15 6.00e-114 403.00
IUUC-Ocu-073995 Oryctolagus cuniculus 32.23 8.00e-117 412.00
IUUC-Oba-075407 Oryza barthii 28.20 1.00e-89 322.00
IUUC-Obr-076451 Oryza brachyantha 30.17 2.00e-113 401.00
IUUC-Ogl-077535 Oryza glaberrima 29.70 1.00e-110 392.00
IUUC-Ogu-077995 Oryza glumaepatula 27.65 1.00e-86 312.00
IUUC-Oin-079431 Oryza indica 29.73 1.00e-111 395.00
IUUC-Olo-080495 Oryza longistaminata 28.42 4.00e-93 333.00
IUUC-Oni-082336 Oryza nivara 28.71 2.00e-103 368.00
IUUC-Opu-084028 Oryza punctata 28.51 2.00e-92 331.00
IUUC-Oru-084500 Oryza rufipogon 27.78 7.00e-87 313.00
IUUC-Osa-086242 Oryza sativa 29.73 5.00e-112 397.00
IUUC-Ola-086612 Oryzias latipes 29.89 5.00e-84 303.00
IUUC-Olu-087703 Ostreococcus lucimarinus 28.68 7.00e-76 276.00
IUUC-Oga-088572 Otolemur garnettii 31.86 6.00e-120 423.00
IUUC-Oar-090363 Ovis aries 31.58 7.00e-123 432.00
IUUC-Ptr-090477 Pan troglodytes 31.72 5.00e-120 423.00
IUUC-Pan-092914 Papio anubis 31.83 7.00e-122 429.00
IUUC-Psi-093019 Pelodiscus sinensis 29.72 2.00e-109 387.00
IUUC-Pma-094303 Petromyzon marinus 29.34 2.00e-88 318.00
IUUC-Pno-094938 Phaeosphaeria nodorum 34.57 2.00e-114 404.00
IUUC-Ppa-095720 Physcomitrella patens 27.43 2.00e-95 342.00
IUUC-Pfo-097034 Poecilia formosa 30.31 5.00e-104 370.00
IUUC-Pab-097669 Pongo abelii 31.72 2.00e-122 431.00
IUUC-Pop-098835 Populus trichocarpa 31.91 4.00e-121 427.00
IUUC-Pca-101097 Procavia capensis 42.51 2.00e-51 195.00
IUUC-Ppe-101430 Prunus persica 29.49 7.00e-115 406.00
IUUC-Pva-103152 Pteropus vampyrus 31.65 1.00e-121 428.00
IUUC-Pgr-103517 Puccinia graminis 28.70 4.00e-106 377.00
IUUC-Ptt-103697 Puccinia triticina 28.50 1.00e-89 322.00
IUUC-Pte-104121 Pyrenophora teres 33.91 4.00e-133 467.00
IUUC-Pyt-104672 Pyrenophora triticirepentis 34.20 3.00e-134 470.00
IUUC-Rno-105435 Rattus norvegicus 31.37 1.00e-123 435.00
IUUC-Sha-107272 Sarcophilus harrisii 30.48 3.00e-107 380.00
IUUC-Sja-107744 Schizosaccharomyces japonicus 38.52 5.00e-171 592.00
IUUC-Spo-108256 Schizosaccharomyces pombe 40.06 0.00e+00 626.00
IUUC-Ssl-108618 Sclerotinia sclerotiorum 34.65 2.00e-156 544.00
IUUC-Smo-108762 Selaginella moellendorffii 29.60 4.00e-106 377.00
IUUC-Sit-110051 Setaria italica 29.54 4.00e-106 377.00
IUUC-Sly-111181 Solanum lycopersicum 30.66 1.00e-112 398.00
IUUC-Stu-112018 Solanum tuberosum 30.90 2.00e-112 398.00
IUUC-Sar-113348 Sorex araneus 32.28 4.00e-89 320.00
IUUC-Sbi-114282 Sorghum bicolor 29.67 1.00e-109 388.00
IUUC-Sre-114946 Sporisorium reilianum 28.77 4.00e-77 281.00
IUUC-Ssc-115287 Sus scrofa 32.01 1.00e-121 429.00
IUUC-Tgu-117138 Taeniopygia guttata 28.24 2.00e-89 321.00
IUUC-Tru-118232 Takifugu rubripes 32.02 2.00e-111 394.00
IUUC-Tsy-119502 Tarsius syrichta 26.07 2.00e-75 275.00
IUUC-Tni-120378 Tetraodon nigroviridis 30.68 4.00e-105 374.00
IUUC-Tca-121506 Theobroma cacao 31.34 4.00e-110 390.00
IUUC-Tre-122166 Trichoderma reesei 34.09 6.00e-150 523.00
IUUC-Tvi-122385 Trichoderma virens 34.70 5.00e-155 540.00
IUUC-Tae-122836 Triticum aestivum 30.31 3.00e-119 421.00
IUUC-Tur-126490 Triticum urartu 30.40 3.00e-91 328.00
IUUC-Tme-127157 Tuber melanosporum 36.50 3.00e-141 493.00
IUUC-Tbe-127981 Tupaia belangeri 32.76 3.00e-106 377.00
IUUC-Ttr-128886 Tursiops truncatus 30.99 2.00e-115 408.00
IUUC-Uma-129439 Ustilago maydis 28.00 5.00e-83 300.00
IUUC-Vda-129760 Verticillium dahliae 33.80 2.00e-144 504.00
IUUC-Vpa-130456 Vicugna pacos 31.25 1.00e-118 418.00
IUUC-Vvi-131086 Vitis vinifera 31.09 8.00e-113 399.00
IUUC-Xtr-131829 Xenopus tropicalis 31.04 9.00e-123 432.00
IUUC-Xma-133588 Xiphophorus maculatus 30.03 2.00e-102 365.00
IUUC-Yli-134328 Yarrowia lipolytica 43.31 0.00e+00 743.00
IUUC-Zma-135808 Zea mays 29.86 2.00e-106 377.00
Created Date 25-Jun-2017

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