iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0001s31290	POPTR_0001s31290.1	POPTR_0001s31290.1
POPTR_0001s31290	POPTR_0001s31290.2	POPTR_0001s31290.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.90e-16	59.0	26	54

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 6    vtclaf..sdtllvsGsdDgtikvWDlrt 32
           + c+af   +tll++G+ Dg++ +WD+ t
   Q: 26   MKCIAFnrRGTLLAAGCTDGSCVIWDFET 54
           67****9766****************765 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MNAPIIDPLQ GDFPEVIEEY LQHGLMKCIA FNRRGTLLAA GCTDGSCVIW DFETRGIAKE 60
LRDKDCVAAI TSVCWSKYGH RILVSAADKS LTLWDVVSGE KITRITLQQT PLLARLHSGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGAATTGAAC AGAACTAAAC TTCTCTTTTA TGTCTCCTCC TCGACAAAAC CTCCTCCTCC 60
GCCTCCGCTT CCTCCGCCGC CACTCTCCGC CGCCATTCTC CTTCTCACTC TCTCCCTTCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

KEGG

pop:POPTR_0001s31290g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000616	Aegilops tauschii	64.63	1.00e-178	619.00
IUUC-Bra-017414	Brassica rapa	73.74	0.00e+00	736.00
IUUC-Cpo-021560	Cavia porcellus	35.61	1.00e-47	183.00
IUUC-Cin-025285	Ciona intestinalis	34.46	8.00e-60	224.00
IUUC-Csv-026366	Ciona savignyi	33.42	2.00e-57	216.00
IUUC-Cgl-026450	Colletotrichum gloeosporioides	30.83	8.00e-42	164.00
IUUC-Cne-027092	Cryptococcus neoformans	33.26	1.00e-48	186.00
IUUC-Cme-027137	Cyanidioschyzon merolae	25.95	6.00e-24	105.00
IUUC-Dme-031932	Drosophila melanogaster	37.66	8.00e-65	240.00
IUUC-Eeu-035024	Erinaceus europaeus	36.67	7.00e-57	214.00
IUUC-Gmo-039088	Gadus morhua	35.35	2.00e-57	216.00
IUUC-Mor-057173	Magnaporthe oryzae	31.44	2.00e-43	169.00
IUUC-Mla-059057	Melampsora laricipopulina	31.09	9.00e-36	144.00
IUUC-Mvi-060321	Microbotryum violaceum	33.48	3.00e-48	185.00
IUUC-Mac-065292	Musa acuminata	71.58	0.00e+00	763.00
IUUC-Pma-094450	Petromyzon marinus	38.28	8.00e-57	214.00
IUUC-Ppa-095157	Physcomitrella patens	59.09	5.00e-67	246.00
IUUC-Pca-100623	Procavia capensis	36.67	6.00e-57	214.00
IUUC-Ppe-102053	Prunus persica	85.35	0.00e+00	865.00
IUUC-Sja-107862	Schizosaccharomyces japonicus	32.93	2.00e-47	182.00
IUUC-Spo-108025	Schizosaccharomyces pombe	34.47	3.00e-48	184.00
IUUC-Ssl-108544	Sclerotinia sclerotiorum	32.79	7.00e-48	184.00
IUUC-Sar-113284	Sorex araneus	34.71	9.00e-44	171.00
IUUC-Sre-115146	Sporisorium reilianum	31.59	2.00e-40	159.00
IUUC-Tur-126395	Triticum urartu	64.95	0.00e+00	639.00
IUUC-Tbe-127745	Tupaia belangeri	34.11	1.00e-25	110.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence