iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bta-012868

Ensembl Protein ID

ENSBTAP00000019119.5

UniProt Accession

F1N544; F1N544_BOVIN

Genbank Protein ID

ENSBTAP00000019119

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

DAAA02048806

Gene Name

CHD3

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSBTAG00000014377.5	ENSBTAT00000019119.5	ENSBTAP00000019119.5

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	6.40e-16	58.4	376	421

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           ++C vC++gge    ++ C+ C +++H  Cl ++  +  p+ + w Cp C++
   Q: 376  DYCEVCQQGGE----IILCDTCPRAYHLVCLDPE-LDRAPEGK-WSCPHCEK 421
           79*********....9******************.*******7.******86 PP

Organism

Bos taurus

Protein Sequence
(Fasta)

TKEPDTKILW ARRLRVSFPP RLYWGDRSLD KDDIRLLPSA LGVKKRKRGP KKQKENKPGK 60
PRKRKKLDSE EEFGSERDEY REKSESGGSE YGTGPGRKRR RKHREKKEKK TKRRKKGEGE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACAAAGGAGC CAGACACCAA GATCCTGTGG GCCAGAAGTG AACATGGCTG ACTGAGGGTT 60
TCTTTTCCTC CAAGGCTATA CTGGGGTGAC AGGAGTCTGG GTGATTATCT GAGGAAGTGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR028722--CHD3
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR009071--HMG_box_dom
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0005813--C:centrosome
GO:0005737--C:cytoplasm
GO:0005730--C:nucleolus
GO:0016581--C:NuRD complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0003723--F:RNA binding
GO:0008270--F:zinc ion binding
GO:0051297--P:centrosome organization
GO:0006333--P:chromatin assembly or disassembly
GO:0006355--P:regulation of transcription, DNA-templated
GO:0007051--P:spindle organization

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aca-004560	Anolis carolinensis	82.49	0.00e+00	2728.00
IUUC-Aly-005645	Arabidopsis lyrata	39.73	3.00e-151	530.00
IUUC-Ath-007406	Arabidopsis thaliana	40.70	2.00e-156	547.00
IUUC-Ame-011352	Astyanax mexicanus	79.63	0.00e+00	2071.00
IUUC-Bol-016073	Brassica oleracea	41.29	5.00e-156	546.00
IUUC-Bra-016724	Brassica rapa	41.52	2.00e-157	550.00
IUUC-Cja-019018	Callithrix jacchus	89.80	0.00e+00	3098.00
IUUC-Cfa-021055	Canis familiaris	97.40	0.00e+00	3228.00
IUUC-Cpo-021523	Cavia porcellus	97.66	0.00e+00	3281.00
IUUC-Csa-024136	Chlorocebus sabaeus	98.32	0.00e+00	3179.00
IUUC-Csv-025847	Ciona savignyi	54.49	0.00e+00	1415.00
IUUC-Dre-028226	Danio rerio	70.77	0.00e+00	2194.00
IUUC-Dor-030167	Dipodomys ordii	96.57	0.00e+00	2624.00
IUUC-Ete-032757	Echinops telfairi	91.91	0.00e+00	2902.00
IUUC-Eeu-034777	Erinaceus europaeus	88.51	0.00e+00	2645.00
IUUC-Fca-036043	Felis catus	97.77	0.00e+00	3242.00
IUUC-Gmo-038957	Gadus morhua	80.00	0.00e+00	1458.00
IUUC-Gac-041375	Gasterosteus aculeatus	70.67	0.00e+00	2550.00
IUUC-Gma-043999	Glycine max	43.17	0.00e+00	737.00
IUUC-Ggo-045538	Gorilla gorilla	98.48	0.00e+00	3168.00
IUUC-Hsa-045916	Homo sapiens	98.63	0.00e+00	3169.00
IUUC-Itr-048463	Ictidomys tridecemlineatus	98.19	0.00e+00	3135.00
IUUC-Lch-050343	Latimeria chalumnae	79.64	0.00e+00	2092.00
IUUC-Loc-052383	Lepisosteus oculatus	81.35	0.00e+00	2065.00
IUUC-Laf-053870	Loxodonta africana	98.14	0.00e+00	2866.00
IUUC-Mcc-055499	Macaca mulatta	92.11	0.00e+00	3057.00
IUUC-Meu-056292	Macropus eugenii	90.03	0.00e+00	1257.00
IUUC-Mmr-061223	Microcebus murinus	96.80	0.00e+00	3185.00
IUUC-Mdo-062971	Monodelphis domestica	92.21	0.00e+00	2848.00
IUUC-Mmu-063920	Mus musculus	96.10	0.00e+00	3141.00
IUUC-Mpu-065809	Mustela putorius furo	97.99	0.00e+00	2972.00
IUUC-Mlu-067355	Myotis lucifugus	96.70	0.00e+00	3265.00
IUUC-Nle-069842	Nomascus leucogenys	97.56	0.00e+00	3047.00
IUUC-Opr-070960	Ochotona princeps	96.21	0.00e+00	3093.00
IUUC-Ont-072647	Oreochromis niloticus	67.82	0.00e+00	2345.00
IUUC-Oan-072885	Ornithorhynchus anatinus	59.94	0.00e+00	1933.00
IUUC-Ocu-074438	Oryctolagus cuniculus	92.89	0.00e+00	3055.00
IUUC-Ola-086961	Oryzias latipes	69.72	0.00e+00	2169.00
IUUC-Oga-088374	Otolemur garnettii	97.87	0.00e+00	3197.00
IUUC-Oar-089784	Ovis aries	96.40	0.00e+00	3277.00
IUUC-Ptr-090799	Pan troglodytes	98.68	0.00e+00	3177.00
IUUC-Pfo-096265	Poecilia formosa	75.69	0.00e+00	2078.00
IUUC-Pab-098174	Pongo abelii	93.30	0.00e+00	3043.00
IUUC-Pca-100829	Procavia capensis	96.77	0.00e+00	2378.00
IUUC-Rno-104884	Rattus norvegicus	95.92	0.00e+00	2995.00
IUUC-Sha-107233	Sarcophilus harrisii	92.50	0.00e+00	3031.00
IUUC-Sly-110976	Solanum lycopersicum	43.57	0.00e+00	738.00
IUUC-Ssc-115751	Sus scrofa	98.00	0.00e+00	3258.00
IUUC-Tru-118648	Takifugu rubripes	75.81	0.00e+00	2128.00
IUUC-Tni-120039	Tetraodon nigroviridis	75.03	0.00e+00	2094.00
IUUC-Tbe-128117	Tupaia belangeri	92.29	0.00e+00	1327.00
IUUC-Vpa-130209	Vicugna pacos	88.06	0.00e+00	648.00
IUUC-Vvi-130849	Vitis vinifera	43.77	0.00e+00	737.00
IUUC-Xtr-132833	Xenopus tropicalis	72.89	0.00e+00	2432.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence