iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000042878.3	ENSRNOT00000088282.1	ENSRNOP00000070315.1
ENSRNOG00000042878.3	ENSRNOT00000066823.2	ENSRNOP00000060344.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
Protein-protein Interaction
IID
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.40e-11	44.5	43	71

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 4    dsvtclaf..sd.tllvsGsdDgtikvWD 29
           + v++l++   + t +++G+ D t++ ++
   Q: 43   EAVNALCWgtGGeTQILVGCADRTVRHFN 71
           579******73369***********9665 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MAATSARWNH VWVGTETGIL KGVNLQRKLA ANFTPSGQPR REEAVNALCW GTGGETQILV 60
GCADRTVRHF NAEEGTFQSQ RYCPGGEGTF RGLAQADDGT LITCVDSGIL RVWCENDKEA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAGTCCTGGC TCCACACAGC ACTGCAGTTC AGAAATTATG CTTTTCACAG ACAGTGAGAG 60
ATGATCCTTT TCAGTTCTCC ATAAACACGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0030687--C:preribosome, large subunit precursor
GO:0042273--P:ribosomal large subunit biogenesis

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000787	Aegilops tauschii	36.56	1.00e-24	107.00
IUUC-Aml-001460	Ailuropoda melanoleuca	87.37	0.00e+00	691.00
IUUC-Atr-002657	Amborella trichopoda	36.42	4.00e-25	108.00
IUUC-Aly-006380	Arabidopsis lyrata	39.31	5.00e-27	115.00
IUUC-Ath-007686	Arabidopsis thaliana	38.15	9.00e-26	111.00
IUUC-Ame-011942	Astyanax mexicanus	53.63	1.00e-106	379.00
IUUC-Bta-013382	Bos taurus	89.87	0.00e+00	708.00
IUUC-Bdi-014280	Brachypodium distachyon	32.74	5.00e-28	119.00
IUUC-Bra-017855	Brassica rapa	39.31	1.00e-27	117.00
IUUC-Cja-018933	Callithrix jacchus	89.12	0.00e+00	684.00
IUUC-Cfa-020634	Canis familiaris	88.28	0.00e+00	688.00
IUUC-Cpo-022089	Cavia porcellus	80.99	5.00e-172	597.00
IUUC-Csa-023835	Chlorocebus sabaeus	89.90	0.00e+00	710.00
IUUC-Cho-024385	Choloepus hoffmanni	70.18	2.00e-87	315.00
IUUC-Cin-025691	Ciona intestinalis	44.94	2.00e-72	265.00
IUUC-Dre-028473	Danio rerio	53.61	3.00e-99	355.00
IUUC-Dno-029687	Dasypus novemcinctus	87.40	0.00e+00	678.00
IUUC-Dor-030529	Dipodomys ordii	84.58	1.00e-119	423.00
IUUC-Dme-031982	Drosophila melanogaster	31.83	3.00e-35	142.00
IUUC-Ete-032407	Echinops telfairi	61.16	2.00e-107	382.00
IUUC-Eca-033792	Equus caballus	82.73	2.00e-169	588.00
IUUC-Fca-036584	Felis catus	88.57	0.00e+00	698.00
IUUC-Gmo-039064	Gadus morhua	55.52	4.00e-99	354.00
IUUC-Gac-042170	Gasterosteus aculeatus	52.00	3.00e-98	351.00
IUUC-Gma-044150	Glycine max	32.33	1.00e-24	107.00
IUUC-Ggo-044955	Gorilla gorilla	90.41	0.00e+00	715.00
IUUC-Hsa-046615	Homo sapiens	89.90	0.00e+00	709.00
IUUC-Hvu-047119	Hordeum vulgare	32.67	1.00e-26	114.00
IUUC-Itr-048987	Ictidomys tridecemlineatus	90.03	0.00e+00	689.00
IUUC-Kpa-049188	Komagataella pastoris	28.30	2.00e-17	83.60
IUUC-Lch-050396	Latimeria chalumnae	58.56	6.00e-119	420.00
IUUC-Laf-054015	Loxodonta africana	87.79	0.00e+00	677.00
IUUC-Mcc-055589	Macaca mulatta	90.16	0.00e+00	711.00
IUUC-Meu-056160	Macropus eugenii	59.89	1.00e-113	402.00
IUUC-Mtr-057719	Medicago truncatula	31.69	2.00e-27	117.00
IUUC-Mmr-060801	Microcebus murinus	89.64	0.00e+00	714.00
IUUC-Mdo-062069	Monodelphis domestica	71.68	3.00e-149	521.00
IUUC-Mmu-063586	Mus musculus	96.88	0.00e+00	731.00
IUUC-Mpu-066542	Mustela putorius furo	89.12	0.00e+00	686.00
IUUC-Mlu-067520	Myotis lucifugus	74.48	2.00e-148	518.00
IUUC-Nle-069422	Nomascus leucogenys	88.60	0.00e+00	704.00
IUUC-Opr-070402	Ochotona princeps	75.44	4.00e-93	334.00
IUUC-Ont-072078	Oreochromis niloticus	58.75	1.00e-106	379.00
IUUC-Ocu-073886	Oryctolagus cuniculus	86.89	0.00e+00	655.00
IUUC-Obr-076206	Oryza brachyantha	34.13	1.00e-30	127.00
IUUC-Ogl-077112	Oryza glaberrima	33.85	3.00e-30	125.00
IUUC-Ogu-078172	Oryza glumaepatula	35.92	3.00e-26	112.00
IUUC-Oin-080070	Oryza indica	33.85	4.00e-30	125.00
IUUC-Olo-080534	Oryza longistaminata	32.58	2.00e-27	117.00
IUUC-Ome-081869	Oryza meridionalis	32.58	4.00e-27	115.00
IUUC-Opu-083828	Oryza punctata	33.21	2.00e-28	119.00
IUUC-Oru-084690	Oryza rufipogon	32.58	8.00e-28	118.00
IUUC-Ola-087342	Oryzias latipes	54.14	2.00e-94	338.00
IUUC-Oga-088865	Otolemur garnettii	87.40	0.00e+00	681.00
IUUC-Oar-090030	Ovis aries	89.35	0.00e+00	702.00
IUUC-Pan-092461	Papio anubis	90.16	0.00e+00	709.00
IUUC-Psi-093061	Pelodiscus sinensis	57.62	2.00e-124	439.00
IUUC-Pma-094281	Petromyzon marinus	53.78	6.00e-100	357.00
IUUC-Ppa-095623	Physcomitrella patens	38.83	2.00e-30	127.00
IUUC-Pfo-097074	Poecilia formosa	55.94	1.00e-93	336.00
IUUC-Pab-098290	Pongo abelii	90.67	0.00e+00	716.00
IUUC-Pop-099602	Populus trichocarpa	38.15	1.00e-25	110.00
IUUC-Pca-100383	Procavia capensis	86.23	0.00e+00	651.00
IUUC-Ppe-101867	Prunus persica	36.22	3.00e-25	109.00
IUUC-Pva-103218	Pteropus vampyrus	74.81	7.00e-165	573.00
IUUC-Sha-107127	Sarcophilus harrisii	68.69	2.00e-151	528.00
IUUC-Sit-110466	Setaria italica	37.44	9.00e-27	115.00
IUUC-Sbi-113854	Sorghum bicolor	38.22	3.00e-27	116.00
IUUC-Ssc-116144	Sus scrofa	88.83	0.00e+00	670.00
IUUC-Tru-118516	Takifugu rubripes	49.61	4.00e-104	371.00
IUUC-Tni-120527	Tetraodon nigroviridis	55.84	8.00e-103	367.00
IUUC-Tae-125457	Triticum aestivum	37.10	3.00e-26	113.00
IUUC-Tur-126054	Triticum urartu	37.10	3.00e-26	113.00
IUUC-Tbe-127232	Tupaia belangeri	71.17	3.00e-142	498.00
IUUC-Ttr-128529	Tursiops truncatus	88.83	0.00e+00	699.00
IUUC-Vpa-130703	Vicugna pacos	91.01	8.00e-92	330.00
IUUC-Vvi-131680	Vitis vinifera	37.02	3.00e-27	116.00
IUUC-Xtr-132802	Xenopus tropicalis	48.58	1.00e-90	326.00
IUUC-Xma-133396	Xiphophorus maculatus	48.59	6.00e-77	280.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence