iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Mtr-058053

Ensembl Protein ID

KEH24722

UniProt Accession

A0A072U4U0; A0A072U4U0_MEDTR

Genbank Protein ID

KEH24722.1

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

CM001222

Gene Name

MTR_6g004040

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
MTR_6g004040	KEH24722	KEH24722

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-38	131.0	141	179
UBD/Beta-Prp	1.70e-60	206.2	14	272

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v++++f +d + +vsG+ D+t+k+WDl+ g+ll+
   Q: 141  GHTRGVNAIRFtPDgRWVVSGGEDNTVKLWDLTAGKLLH 179
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgd 107
           +h s ++c+k+  +++++l+tg++d+++ +w + +++++ slsgh++++ +v+f++++ + + g+  +tik+wdl+  k+v+tl+gh ++ +s++f+p g+
   Q: 14   AHASAVNCLKIgRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHSSGIDSVNFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCTSVDFHPFGE 114
           68889999***99*********************************************999999999********************************** PP
   S: 108  klvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwd 208
           +++sGs d  +++wd++++ c++ t +gh++ vn +++ pdg+ +vsG+ D+tv+lWdl  gkll+++++ h++++++++f+++ + l++gs d+tvk+wd
   Q: 115  FFASGSLDTNLKIWDIRKKGCIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKS-HEGQIQCIDFHPSEFLLATGSADRTVKFWD 213
           ***********************.*********************************************9.****************************** PP
   S: 209  lqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvi 268
           l+t e + +    t+ v+s+ fsp++  l++g  ++s++++  +   +  +++   s+++
   Q: 214  LETFELIGSAGPETTGVRSLTFSPDGRTLLCG-LHESLKVFSWEPIRCHDMVEVGWSRLS 272
           ***********************999999999.588888876666666666665555555 PP

Organism

Medicago truncatula

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MTTKRAYKLQ EFVAHASAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLSGHSS 60
GIDSVNFDSS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH RSNCTSVDFH PFGEFFASGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTTGATTTG TGAATTTTGA CTGACATTTT GAACCTTCCT TCCCACCACG AGAGATTAAT 60
TTGAACATAA GCAATGAAGC ATTATCATTA CTGATGACCA GTCACAGATC GTGAAAGCGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

mtr:MTR_6g004040

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000954	Aegilops tauschii	64.84	4.00e-163	568.00
IUUC-Aml-002187	Ailuropoda melanoleuca	51.83	2.00e-101	363.00
IUUC-Atr-002899	Amborella trichopoda	60.88	0.00e+00	910.00
IUUC-Apl-003305	Anas platyrhynchos	51.86	1.00e-101	363.00
IUUC-Aca-004635	Anolis carolinensis	50.90	1.00e-91	330.00
IUUC-Aly-005711	Arabidopsis lyrata	69.84	0.00e+00	704.00
IUUC-Ath-007606	Arabidopsis thaliana	59.50	0.00e+00	886.00
IUUC-Acl-008307	Aspergillus clavatus	30.63	3.00e-29	122.00
IUUC-Bgr-011972	Blumeria graminis	28.57	6.00e-30	124.00
IUUC-Bta-012527	Bos taurus	52.49	1.00e-104	373.00
IUUC-Bdi-014652	Brachypodium distachyon	73.46	0.00e+00	681.00
IUUC-Bol-016374	Brassica oleracea	57.78	0.00e+00	863.00
IUUC-Bra-017390	Brassica rapa	56.51	0.00e+00	848.00
IUUC-Cja-019706	Callithrix jacchus	52.49	5.00e-104	371.00
IUUC-Cfa-020139	Canis familiaris	44.82	3.00e-97	348.00
IUUC-Cpo-021710	Cavia porcellus	52.82	3.00e-105	375.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	43.04	6.00e-83	301.00
IUUC-Csa-023546	Chlorocebus sabaeus	52.92	5.00e-101	361.00
IUUC-Cin-025156	Ciona intestinalis	46.31	2.00e-87	315.00
IUUC-Csv-025962	Ciona savignyi	49.48	4.00e-88	317.00
IUUC-Dre-028215	Danio rerio	52.49	2.00e-103	369.00
IUUC-Dno-029314	Dasypus novemcinctus	52.82	3.00e-104	372.00
IUUC-Dor-030482	Dipodomys ordii	52.49	5.00e-105	374.00
IUUC-Dme-032188	Drosophila melanogaster	36.47	7.00e-58	218.00
IUUC-Eca-034143	Equus caballus	52.16	1.00e-101	363.00
IUUC-Fca-035924	Felis catus	52.82	1.00e-104	373.00
IUUC-Fal-037387	Ficedula albicollis	53.49	8.00e-106	377.00
IUUC-Gmo-038692	Gadus morhua	51.67	5.00e-103	367.00
IUUC-Gga-040597	Gallus gallus	49.54	5.00e-104	371.00
IUUC-Gac-042004	Gasterosteus aculeatus	53.49	6.00e-102	364.00
IUUC-Gma-044134	Glycine max	87.76	0.00e+00	1291.00
IUUC-Ggo-044761	Gorilla gorilla	52.49	3.00e-104	371.00
IUUC-Hsa-045698	Homo sapiens	52.49	2.00e-104	372.00
IUUC-Hvu-047649	Hordeum vulgare	73.84	0.00e+00	678.00
IUUC-Itr-048697	Ictidomys tridecemlineatus	52.49	8.00e-105	374.00
IUUC-Lch-049674	Latimeria chalumnae	53.00	3.00e-107	382.00
IUUC-Lpe-051554	Leersia perrieri	73.86	0.00e+00	697.00
IUUC-Loc-052623	Lepisosteus oculatus	52.82	2.00e-100	359.00
IUUC-Laf-054587	Loxodonta africana	52.16	8.00e-104	370.00
IUUC-Mcc-055851	Macaca mulatta	52.49	3.00e-104	371.00
IUUC-Meu-056704	Macropus eugenii	53.16	3.00e-105	375.00
IUUC-Mga-059608	Meleagris gallopavo	51.35	3.00e-101	362.00
IUUC-Mmr-061154	Microcebus murinus	52.49	2.00e-104	372.00
IUUC-Mdo-062365	Monodelphis domestica	52.82	4.00e-104	371.00
IUUC-Mmu-063754	Mus musculus	52.49	9.00e-105	374.00
IUUC-Mac-065100	Musa acuminata	58.77	0.00e+00	870.00
IUUC-Mpu-066245	Mustela putorius furo	53.16	4.00e-105	374.00
IUUC-Mlu-067692	Myotis lucifugus	52.68	2.00e-103	369.00
IUUC-Nle-070051	Nomascus leucogenys	52.16	3.00e-103	368.00
IUUC-Opr-070855	Ochotona princeps	52.16	1.00e-103	370.00
IUUC-Ont-071883	Oreochromis niloticus	52.82	4.00e-102	364.00
IUUC-Oan-073293	Ornithorhynchus anatinus	54.06	5.00e-102	364.00
IUUC-Ocu-074644	Oryctolagus cuniculus	52.49	8.00e-105	374.00
IUUC-Oba-075448	Oryza barthii	52.81	0.00e+00	815.00
IUUC-Obr-076385	Oryza brachyantha	75.38	0.00e+00	696.00
IUUC-Ogl-077427	Oryza glaberrima	75.38	0.00e+00	696.00
IUUC-Ogu-078428	Oryza glumaepatula	48.05	2.00e-180	625.00
IUUC-Oin-079811	Oryza indica	73.25	0.00e+00	685.00
IUUC-Olo-080245	Oryza longistaminata	73.25	0.00e+00	685.00
IUUC-Ome-081239	Oryza meridionalis	71.43	0.00e+00	643.00
IUUC-Oni-082640	Oryza nivara	52.81	0.00e+00	815.00
IUUC-Opu-083748	Oryza punctata	70.48	0.00e+00	649.00
IUUC-Oru-084609	Oryza rufipogon	52.81	0.00e+00	815.00
IUUC-Osa-085988	Oryza sativa	66.23	9.00e-165	573.00
IUUC-Ola-087483	Oryzias latipes	50.00	1.00e-96	346.00
IUUC-Oga-087964	Otolemur garnettii	52.49	1.00e-104	373.00
IUUC-Oar-089483	Ovis aries	52.16	1.00e-102	367.00
IUUC-Ptr-091387	Pan troglodytes	52.49	2.00e-104	372.00
IUUC-Pan-092623	Papio anubis	52.49	3.00e-104	371.00
IUUC-Psi-093830	Pelodiscus sinensis	52.30	2.00e-98	352.00
IUUC-Ppa-095379	Physcomitrella patens	79.29	5.00e-153	534.00
IUUC-Pfo-096755	Poecilia formosa	52.49	3.00e-101	362.00
IUUC-Pab-097564	Pongo abelii	52.49	6.00e-104	370.00
IUUC-Pop-099149	Populus trichocarpa	69.03	0.00e+00	1063.00
IUUC-Pca-100357	Procavia capensis	56.80	1.00e-76	280.00
IUUC-Ppe-101237	Prunus persica	71.23	0.00e+00	1086.00
IUUC-Pva-102397	Pteropus vampyrus	48.17	5.00e-92	331.00
IUUC-Rno-105349	Rattus norvegicus	52.49	8.00e-105	374.00
IUUC-Smo-109409	Selaginella moellendorffii	47.30	0.00e+00	683.00
IUUC-Sit-110360	Setaria italica	74.20	0.00e+00	705.00
IUUC-Sly-111307	Solanum lycopersicum	63.72	0.00e+00	957.00
IUUC-Stu-112053	Solanum tuberosum	58.82	0.00e+00	890.00
IUUC-Sar-112953	Sorex araneus	45.18	3.00e-58	218.00
IUUC-Sbi-114389	Sorghum bicolor	71.02	6.00e-144	504.00
IUUC-Ssc-115949	Sus scrofa	46.91	2.00e-49	189.00
IUUC-Tgu-117461	Taeniopygia guttata	52.82	2.00e-105	375.00
IUUC-Tru-117865	Takifugu rubripes	50.17	4.00e-95	341.00
IUUC-Tsy-119036	Tarsius syrichta	58.54	2.00e-40	159.00
IUUC-Tni-120903	Tetraodon nigroviridis	49.67	1.00e-93	336.00
IUUC-Tca-121185	Theobroma cacao	64.80	0.00e+00	1045.00
IUUC-Tae-125263	Triticum aestivum	75.34	0.00e+00	681.00
IUUC-Tur-126411	Triticum urartu	60.32	2.00e-160	558.00
IUUC-Ttr-128172	Tursiops truncatus	52.49	9.00e-105	373.00
IUUC-Vvi-131489	Vitis vinifera	69.04	0.00e+00	1055.00
IUUC-Xtr-132915	Xenopus tropicalis	51.66	4.00e-100	358.00
IUUC-Xma-134133	Xiphophorus maculatus	51.83	1.00e-98	353.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence